Miyakogusa Predicted Gene

Lj0g3v0307519.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0307519.1 Non Chatacterized Hit- tr|K4ALI6|K4ALI6_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si039767,51.76,1e-18,DUF2348,Uncharacterised protein family
UPF0405; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.20747.1
         (89 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10090.1 | Symbols: ELP6 | elongator protein 6 | chr4:6305455...   105   6e-24

>AT4G10090.1 | Symbols: ELP6 | elongator protein 6 |
           chr4:6305455-6307286 FORWARD LENGTH=262
          Length = 262

 Score =  105 bits (262), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 67/86 (77%), Gaps = 1/86 (1%)

Query: 5   STMIDDICFLEFAANGSSND-VLDFLHYCQTLTSEYGCTFIALDHKDIYLNGERPAIILE 63
           + M+DD+  LE A  GS++D VLDFLHYC TL+SE  C+ + L+H+DIY + ERPA +L+
Sbjct: 137 TVMVDDMSLLEIATTGSNSDHVLDFLHYCHTLSSESNCSLVILNHEDIYASMERPAFLLQ 196

Query: 64  IEYLADILVKAEPLATGLAKDMHWQI 89
           +  LAD+++KAEPLA+GLA D+H Q+
Sbjct: 197 MVCLADVVIKAEPLASGLANDVHGQL 222