Miyakogusa Predicted Gene
- Lj0g3v0307159.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0307159.1 Non Chatacterized Hit- tr|B9TC41|B9TC41_RICCO
Putative uncharacterized protein (Fragment)
OS=Ricinus,84.48,6e-19,seg,NULL; DUF1218,Protein of unknown function
DUF1218,CUFF.20714.1
(159 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G32280.1 | Symbols: | Protein of unknown function (DUF1218) ... 194 2e-50
AT4G21310.1 | Symbols: | Protein of unknown function (DUF1218) ... 188 1e-48
AT1G11500.1 | Symbols: | Protein of unknown function (DUF1218) ... 93 8e-20
AT1G05291.1 | Symbols: | Protein of unknown function (DUF1218) ... 80 5e-16
>AT2G32280.1 | Symbols: | Protein of unknown function (DUF1218) |
chr2:13713210-13713977 FORWARD LENGTH=163
Length = 163
Score = 194 bits (494), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/160 (59%), Positives = 113/160 (70%), Gaps = 1/160 (0%)
Query: 1 MRGKASIFLCFLIVIMDVTAGILGIEAEIAQNKVKHLRLWIFECREPSHNAFMXXXXXXX 60
M I +C +IV +DV A ILGI+AE+AQN+VKH+RLW+FECREPS +AF
Sbjct: 1 MTKIGGILVCLVIVGLDVAAAILGIQAEVAQNQVKHMRLWLFECREPSQDAFRLGLGAAA 60
Query: 61 XXXXXXXXXXXXGGCNCLCSQ-ELQKASPNRQLSMACLILTWIVLAVGLSMLVIGTSSNH 119
GGC C+CSQ E Q++S RQ+SMACL+LTWIV AVG +VIGT SN
Sbjct: 61 ILVMAHVLLNLVGGCLCICSQDEFQRSSSTRQISMACLVLTWIVFAVGFGSIVIGTMSNS 120
Query: 120 KSRGSCGFTHHHFLSIGGILCFVHGLFSVAYYASATASIN 159
KSR SCGFTHHHFLSIGGILCF+H LF VAYY SATA+ +
Sbjct: 121 KSRSSCGFTHHHFLSIGGILCFLHALFCVAYYVSATAAKD 160
>AT4G21310.1 | Symbols: | Protein of unknown function (DUF1218) |
chr4:11339134-11339787 REVERSE LENGTH=168
Length = 168
Score = 188 bits (478), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/158 (57%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 1 MRGKASIFLCFLIVIMDVTAGILGIEAEIAQNKVKHLRLWIFECREPSHNAFMXXXXXXX 60
M F+C LI+ MDV+AGILGIEAEIAQNKVKHL++WIFECR+PS+ AF
Sbjct: 1 MARNVGFFICILILAMDVSAGILGIEAEIAQNKVKHLKMWIFECRDPSYTAFKYGLAACI 60
Query: 61 XXXXXXXXXXXXGGCNCLCS-QELQKASPNRQLSMACLILTWIVLAVGLSMLVIGTSSNH 119
GGC C+ S Q+L+K+S N+QL++A LI TWI+LA+ SML++GT +N
Sbjct: 61 LLVLAHVTANFLGGCLCVASRQDLEKSSANKQLAVASLIFTWIILAIAFSMLIVGTMANS 120
Query: 120 KSRGSCGFTHHHFLSIGGILCFVHGLFSVAYYASATAS 157
+SR +CG +HH LSIGGILCFVHGLF+VAYY SATAS
Sbjct: 121 RSRKNCGISHHRVLSIGGILCFVHGLFAVAYYISATAS 158
>AT1G11500.1 | Symbols: | Protein of unknown function (DUF1218) |
chr1:3870833-3871570 FORWARD LENGTH=184
Length = 184
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 8/165 (4%)
Query: 1 MRGKASIFLCFLIVIMDVTAGILGIEAEIAQNKVKHLRLWIFEC-------REPSHNAFM 53
M + + +I+ D+TA +LGIEAEIAQ+K H R PS AF
Sbjct: 1 MESELGFLVSVVIICADITATVLGIEAEIAQSKAPHHHHQQHSRHSGSGCRRSPSDGAFA 60
Query: 54 XXXXXXXXXXXXXXXXXXXGGCNCLCS-QELQKASPNRQLSMACLILTWIVLAVGLSMLV 112
GGC + S Q+ ++A+ N+ L++A L+L+WI V S L+
Sbjct: 61 EGVAAMVLLFIVHVLANVLGGCTYIRSKQDFKRATANKILAVAFLVLSWIFFVVSYSTLM 120
Query: 113 IGTSSNHKSRGSCGFTHHHFLSIGGILCFVHGLFSVAYYASATAS 157
IGT +N ++ C H F IGGI C HG+ + AYY SA A+
Sbjct: 121 IGTLANSRTNRLCSLPHRWFFLIGGIFCLGHGVVTSAYYVSAIAA 165
>AT1G05291.1 | Symbols: | Protein of unknown function (DUF1218) |
chr1:1541348-1542323 REVERSE LENGTH=204
Length = 204
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 75/149 (50%), Gaps = 12/149 (8%)
Query: 12 LIVIMDVTAGILGIEAEIAQNKVKHLRLWIFECREPSHNAFMXXXXXXXXXXXXXXXXXX 71
L V +D+ AG +G++A+ AQ VKH +L EC+ PS AF+
Sbjct: 23 LTVGLDIVAGFVGLQAQAAQQYVKHDKL---ECKAPSKTAFVLGIIAVSCLATAHVSANV 79
Query: 72 XGGCNCLCSQELQK--ASPNRQLS----MACLILTWIVLAVGLSMLVIGTSSNHKSRGSC 125
G C S Q A P +++ MACL L W+V G +L G SN +SR C
Sbjct: 80 IG---CSISNLFQALGALPKNKITTYFNMACLFLIWVVGIFGALILANGIWSNTESRIRC 136
Query: 126 GFTHHHFLSIGGILCFVHGLFSVAYYASA 154
FT++H SIGG +CF+H + S YY S+
Sbjct: 137 RFTNNHVFSIGGKVCFLHAIVSGIYYISS 165