Miyakogusa Predicted Gene

Lj0g3v0307159.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0307159.1 Non Chatacterized Hit- tr|B9TC41|B9TC41_RICCO
Putative uncharacterized protein (Fragment)
OS=Ricinus,84.48,6e-19,seg,NULL; DUF1218,Protein of unknown function
DUF1218,CUFF.20714.1
         (159 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32280.1 | Symbols:  | Protein of unknown function (DUF1218) ...   194   2e-50
AT4G21310.1 | Symbols:  | Protein of unknown function (DUF1218) ...   188   1e-48
AT1G11500.1 | Symbols:  | Protein of unknown function (DUF1218) ...    93   8e-20
AT1G05291.1 | Symbols:  | Protein of unknown function (DUF1218) ...    80   5e-16

>AT2G32280.1 | Symbols:  | Protein of unknown function (DUF1218) |
           chr2:13713210-13713977 FORWARD LENGTH=163
          Length = 163

 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/160 (59%), Positives = 113/160 (70%), Gaps = 1/160 (0%)

Query: 1   MRGKASIFLCFLIVIMDVTAGILGIEAEIAQNKVKHLRLWIFECREPSHNAFMXXXXXXX 60
           M     I +C +IV +DV A ILGI+AE+AQN+VKH+RLW+FECREPS +AF        
Sbjct: 1   MTKIGGILVCLVIVGLDVAAAILGIQAEVAQNQVKHMRLWLFECREPSQDAFRLGLGAAA 60

Query: 61  XXXXXXXXXXXXGGCNCLCSQ-ELQKASPNRQLSMACLILTWIVLAVGLSMLVIGTSSNH 119
                       GGC C+CSQ E Q++S  RQ+SMACL+LTWIV AVG   +VIGT SN 
Sbjct: 61  ILVMAHVLLNLVGGCLCICSQDEFQRSSSTRQISMACLVLTWIVFAVGFGSIVIGTMSNS 120

Query: 120 KSRGSCGFTHHHFLSIGGILCFVHGLFSVAYYASATASIN 159
           KSR SCGFTHHHFLSIGGILCF+H LF VAYY SATA+ +
Sbjct: 121 KSRSSCGFTHHHFLSIGGILCFLHALFCVAYYVSATAAKD 160


>AT4G21310.1 | Symbols:  | Protein of unknown function (DUF1218) |
           chr4:11339134-11339787 REVERSE LENGTH=168
          Length = 168

 Score =  188 bits (478), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/158 (57%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 1   MRGKASIFLCFLIVIMDVTAGILGIEAEIAQNKVKHLRLWIFECREPSHNAFMXXXXXXX 60
           M      F+C LI+ MDV+AGILGIEAEIAQNKVKHL++WIFECR+PS+ AF        
Sbjct: 1   MARNVGFFICILILAMDVSAGILGIEAEIAQNKVKHLKMWIFECRDPSYTAFKYGLAACI 60

Query: 61  XXXXXXXXXXXXGGCNCLCS-QELQKASPNRQLSMACLILTWIVLAVGLSMLVIGTSSNH 119
                       GGC C+ S Q+L+K+S N+QL++A LI TWI+LA+  SML++GT +N 
Sbjct: 61  LLVLAHVTANFLGGCLCVASRQDLEKSSANKQLAVASLIFTWIILAIAFSMLIVGTMANS 120

Query: 120 KSRGSCGFTHHHFLSIGGILCFVHGLFSVAYYASATAS 157
           +SR +CG +HH  LSIGGILCFVHGLF+VAYY SATAS
Sbjct: 121 RSRKNCGISHHRVLSIGGILCFVHGLFAVAYYISATAS 158


>AT1G11500.1 | Symbols:  | Protein of unknown function (DUF1218) |
           chr1:3870833-3871570 FORWARD LENGTH=184
          Length = 184

 Score = 92.8 bits (229), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 1   MRGKASIFLCFLIVIMDVTAGILGIEAEIAQNKVKHLRLWIFEC-------REPSHNAFM 53
           M  +    +  +I+  D+TA +LGIEAEIAQ+K  H               R PS  AF 
Sbjct: 1   MESELGFLVSVVIICADITATVLGIEAEIAQSKAPHHHHQQHSRHSGSGCRRSPSDGAFA 60

Query: 54  XXXXXXXXXXXXXXXXXXXGGCNCLCS-QELQKASPNRQLSMACLILTWIVLAVGLSMLV 112
                              GGC  + S Q+ ++A+ N+ L++A L+L+WI   V  S L+
Sbjct: 61  EGVAAMVLLFIVHVLANVLGGCTYIRSKQDFKRATANKILAVAFLVLSWIFFVVSYSTLM 120

Query: 113 IGTSSNHKSRGSCGFTHHHFLSIGGILCFVHGLFSVAYYASATAS 157
           IGT +N ++   C   H  F  IGGI C  HG+ + AYY SA A+
Sbjct: 121 IGTLANSRTNRLCSLPHRWFFLIGGIFCLGHGVVTSAYYVSAIAA 165


>AT1G05291.1 | Symbols:  | Protein of unknown function (DUF1218) |
           chr1:1541348-1542323 REVERSE LENGTH=204
          Length = 204

 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 75/149 (50%), Gaps = 12/149 (8%)

Query: 12  LIVIMDVTAGILGIEAEIAQNKVKHLRLWIFECREPSHNAFMXXXXXXXXXXXXXXXXXX 71
           L V +D+ AG +G++A+ AQ  VKH +L   EC+ PS  AF+                  
Sbjct: 23  LTVGLDIVAGFVGLQAQAAQQYVKHDKL---ECKAPSKTAFVLGIIAVSCLATAHVSANV 79

Query: 72  XGGCNCLCSQELQK--ASPNRQLS----MACLILTWIVLAVGLSMLVIGTSSNHKSRGSC 125
            G   C  S   Q   A P  +++    MACL L W+V   G  +L  G  SN +SR  C
Sbjct: 80  IG---CSISNLFQALGALPKNKITTYFNMACLFLIWVVGIFGALILANGIWSNTESRIRC 136

Query: 126 GFTHHHFLSIGGILCFVHGLFSVAYYASA 154
            FT++H  SIGG +CF+H + S  YY S+
Sbjct: 137 RFTNNHVFSIGGKVCFLHAIVSGIYYISS 165