Miyakogusa Predicted Gene

Lj0g3v0307049.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0307049.1 tr|Q9SGX9|Q9SGX9_ARATH F20B24.14 OS=Arabidopsis
thaliana PE=4 SV=1,30.3,0.000000003,seg,NULL,CUFF.20701.1
         (299 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10710.2 | Symbols: PHS1 | poor homologous synapsis 1 | chr1:...   156   2e-38
AT1G10710.1 | Symbols: PHS1 | poor homologous synapsis 1 | chr1:...   153   1e-37

>AT1G10710.2 | Symbols: PHS1 | poor homologous synapsis 1 |
           chr1:3558423-3560407 FORWARD LENGTH=349
          Length = 349

 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 155/353 (43%), Gaps = 69/353 (19%)

Query: 1   MAGTLALVSMRD---------QWEISFARFIPYXXXXXXXXXXXXXXXXXXXXXXXXXXX 51
           MAG+L   + R          +W I FARF+ Y                           
Sbjct: 1   MAGSLTASNRRRNAEDSSEIYRWTIGFARFVHYPSSPSPHPVLKPLGKREQYHSPHGT-- 58

Query: 52  XXXXWIXXXXXXAAFLRLSPDLSASDTILTVSFNSKHLEEHYVSKLLFSWPQVSCVPELP 111
               W+       + L +  +L+ SD IL+V    K LEEHY+SKL F+WPQ+SCV   P
Sbjct: 59  ----WLSASSSTVS-LHIVDELNRSDVILSVKLGQKVLEEHYISKLNFTWPQMSCVSGFP 113

Query: 112 ARGIRTVLVSYRDSAGEIQKFALRFPSIYETQSFINALKEILKDEKDPEPLNTDFGXXXX 171
           +RG R + V+Y DSA +IQKFALRF +      F+ ALKE +K  K+    N        
Sbjct: 114 SRGSRAIFVTYMDSANQIQKFALRFSTCDAALEFVEALKEKIKGLKEASTQNQKNKTRCD 173

Query: 172 XXXXXXXXNKRA---HRSCEELSFMTPLDNYVPQMPLRINNGEQ---------------- 212
                      A     + +E + + PL++YVP+M  RI    Q                
Sbjct: 174 VSFQSDYNPSDAIIPRATQKEPNMVRPLNSYVPEMLPRIVYEAQYQKSETRSEVSFQSDY 233

Query: 213 -------PSGTQEKETT------------------------PAQKFDGTLPALPPSFATL 241
                  P  T+E+                           P+Q     +P+LPPSF TL
Sbjct: 234 NPSIEIFPRATEEEPNMVRFFDSSVPEVLPRPEYEAGQALYPSQSTLNQIPSLPPSFTTL 293

Query: 242 LMDC---SEVKHAQPTVSEEIDLKSQIVRYMEDSSFHDMLVKVEKVIHEIGGD 291
           L  C   S +   Q TV +  DLKSQI++YMEDSSF DML KVE++I EIGG+
Sbjct: 294 LSGCFPDSTLDAGQTTVKQNPDLKSQILKYMEDSSFQDMLQKVERIIDEIGGN 346


>AT1G10710.1 | Symbols: PHS1 | poor homologous synapsis 1 |
           chr1:3558423-3561495 FORWARD LENGTH=410
          Length = 410

 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 156/361 (43%), Gaps = 69/361 (19%)

Query: 1   MAGTLALVSMRD---------QWEISFARFIPYXXXXXXXXXXXXXXXXXXXXXXXXXXX 51
           MAG+L   + R          +W I FARF+ Y                           
Sbjct: 1   MAGSLTASNRRRNAEDSSEIYRWTIGFARFVHYPSSPSPHPVLKPLGKREQYHSPHGT-- 58

Query: 52  XXXXWIXXXXXXAAFLRLSPDLSASDTILTVSFNSKHLEEHYVSKLLFSWPQVSCVPELP 111
               W+       + L +  +L+ SD IL+V    K LEEHY+SKL F+WPQ+SCV   P
Sbjct: 59  ----WLSASSSTVS-LHIVDELNRSDVILSVKLGQKVLEEHYISKLNFTWPQMSCVSGFP 113

Query: 112 ARGIRTVLVSYRDSAGEIQKFALRFPSIYETQSFINALKEILKDEKDPEPLNTDFGXXXX 171
           +RG R + V+Y DSA +IQKFALRF +      F+ ALKE +K  K+    N        
Sbjct: 114 SRGSRAIFVTYMDSANQIQKFALRFSTCDAALEFVEALKEKIKGLKEASTQNQKNKTRCD 173

Query: 172 XXXXXXXXNKRA---HRSCEELSFMTPLDNYVPQMPLRINNGEQ---------------- 212
                      A     + +E + + PL++YVP+M  RI    Q                
Sbjct: 174 VSFQSDYNPSDAIIPRATQKEPNMVRPLNSYVPEMLPRIVYEAQYQKSETRSEVSFQSDY 233

Query: 213 -------PSGTQEKETT------------------------PAQKFDGTLPALPPSFATL 241
                  P  T+E+                           P+Q     +P+LPPSF TL
Sbjct: 234 NPSIEIFPRATEEEPNMVRFFDSSVPEVLPRPEYEAGQALYPSQSTLNQIPSLPPSFTTL 293

Query: 242 LMDC---SEVKHAQPTVSEEIDLKSQIVRYMEDSSFHDMLVKVEKVIHEIGGDMSLSSAG 298
           L  C   S +   Q TV +  DLKSQI++YMEDSSF DML KVE++I EIG     S+ G
Sbjct: 294 LSGCFPDSTLDAGQTTVKQNPDLKSQILKYMEDSSFQDMLQKVERIIDEIGDRCVGSTIG 353

Query: 299 H 299
            
Sbjct: 354 R 354