Miyakogusa Predicted Gene

Lj0g3v0306819.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0306819.1 CUFF.20678.1
         (383 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06600.2 | Symbols: UBP12 | ubiquitin-specific protease 12 | ...   121   9e-28
AT5G06600.1 | Symbols: UBP12 | ubiquitin-specific protease 12 | ...   121   9e-28
AT5G06600.3 | Symbols: UBP12 | ubiquitin-specific protease 12 | ...   120   1e-27
AT3G11910.2 | Symbols: UBP13 | ubiquitin-specific protease 13 | ...   115   4e-26
AT3G11910.1 | Symbols: UBP13 | ubiquitin-specific protease 13 | ...   115   4e-26
AT3G58270.2 | Symbols:  | Arabidopsis phospholipase-like protein...    85   7e-17
AT3G58270.1 | Symbols:  | Arabidopsis phospholipase-like protein...    85   7e-17
AT3G58210.1 | Symbols:  | TRAF-like family protein | chr3:215626...    79   6e-15
AT3G58260.1 | Symbols:  | TRAF-like family protein | chr3:215737...    77   2e-14
AT2G25320.1 | Symbols:  | TRAF-like family protein | chr2:107819...    71   1e-12
AT3G58250.1 | Symbols:  | TRAF-like family protein | chr3:215707...    71   2e-12
AT3G44790.1 | Symbols:  | TRAF-like family protein | chr3:163287...    64   2e-10
AT3G58360.1 | Symbols:  | TRAF-like family protein | chr3:215935...    63   4e-10
AT3G58340.1 | Symbols:  | TRAF-like family protein | chr3:215890...    62   6e-10
AT3G58200.1 | Symbols:  | TRAF-like family protein | chr3:215600...    62   7e-10
AT3G58220.2 | Symbols:  | TRAF-like family protein | chr3:215646...    61   1e-09
AT3G58220.1 | Symbols:  | TRAF-like family protein | chr3:215651...    60   2e-09
AT2G05420.1 | Symbols:  | TRAF-like family protein | chr2:198390...    56   4e-08
AT3G58350.1 | Symbols: RTM3 | RESTRICTED TEV MOVEMENT 3 | chr3:2...    56   5e-08
AT5G52330.1 | Symbols:  | TRAF-like superfamily protein | chr5:2...    55   1e-07
AT5G43560.2 | Symbols:  | TRAF-like superfamily protein | chr5:1...    54   1e-07
AT5G43560.1 | Symbols:  | TRAF-like superfamily protein | chr5:1...    54   1e-07
AT1G04300.1 | Symbols:  | TRAF-like superfamily protein | chr1:1...    54   3e-07
AT3G58240.1 | Symbols:  | TRAF-like superfamily protein | chr3:2...    54   3e-07
AT2G25330.1 | Symbols:  | TRAF-like family protein | chr2:107889...    52   6e-07
AT3G58410.1 | Symbols:  | TRAF-like family protein | chr3:216048...    52   8e-07
AT3G58440.1 | Symbols:  | TRAF-like superfamily protein | chr3:2...    51   2e-06
AT1G04300.3 | Symbols:  | TRAF-like superfamily protein | chr1:1...    51   2e-06
AT3G58290.1 | Symbols:  | TRAF-like superfamily protein | chr3:2...    49   6e-06
AT4G09780.1 | Symbols:  | TRAF-like family protein | chr4:615953...    49   7e-06

>AT5G06600.2 | Symbols: UBP12 | ubiquitin-specific protease 12 |
           chr5:2019545-2027834 REVERSE LENGTH=1115
          Length = 1115

 Score =  121 bits (303), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 97/167 (58%), Gaps = 7/167 (4%)

Query: 31  NELATDVNFEKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHFSLYLMVV 90
           N+ A D    KFTW I +FS+Q+T K  S  FV+ GY WRIL+ P   +V H S+YL V 
Sbjct: 45  NQPAEDPPTLKFTWTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVS 104

Query: 91  DSLP-PFGWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQ 148
           D+   P+GWSR   F+L ++NQ+  + ++ KET+ +FN     WG + F+ L +LYD  +
Sbjct: 105 DAASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSR 164

Query: 149 GYLVSDTCIIEVNICVSAFGFTKIQDIYSLNLPNSTPTNGSKFDQAT 195
           GYLV+DT ++E  + V      K+ D +S +    T   G K   AT
Sbjct: 165 GYLVNDTVLVEAEVAVR-----KVLDYWSYDSKKETGFVGLKNQGAT 206


>AT5G06600.1 | Symbols: UBP12 | ubiquitin-specific protease 12 |
           chr5:2019545-2027834 REVERSE LENGTH=1116
          Length = 1116

 Score =  121 bits (303), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 97/167 (58%), Gaps = 7/167 (4%)

Query: 31  NELATDVNFEKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHFSLYLMVV 90
           N+ A D    KFTW I +FS+Q+T K  S  FV+ GY WRIL+ P   +V H S+YL V 
Sbjct: 46  NQPAEDPPTLKFTWTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVS 105

Query: 91  DSLP-PFGWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQ 148
           D+   P+GWSR   F+L ++NQ+  + ++ KET+ +FN     WG + F+ L +LYD  +
Sbjct: 106 DAASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSR 165

Query: 149 GYLVSDTCIIEVNICVSAFGFTKIQDIYSLNLPNSTPTNGSKFDQAT 195
           GYLV+DT ++E  + V      K+ D +S +    T   G K   AT
Sbjct: 166 GYLVNDTVLVEAEVAVR-----KVLDYWSYDSKKETGFVGLKNQGAT 207


>AT5G06600.3 | Symbols: UBP12 | ubiquitin-specific protease 12 |
           chr5:2020682-2027834 REVERSE LENGTH=985
          Length = 985

 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 97/167 (58%), Gaps = 7/167 (4%)

Query: 31  NELATDVNFEKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHFSLYLMVV 90
           N+ A D    KFTW I +FS+Q+T K  S  FV+ GY WRIL+ P   +V H S+YL V 
Sbjct: 46  NQPAEDPPTLKFTWTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVS 105

Query: 91  DSLP-PFGWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQ 148
           D+   P+GWSR   F+L ++NQ+  + ++ KET+ +FN     WG + F+ L +LYD  +
Sbjct: 106 DAASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSR 165

Query: 149 GYLVSDTCIIEVNICVSAFGFTKIQDIYSLNLPNSTPTNGSKFDQAT 195
           GYLV+DT ++E  + V      K+ D +S +    T   G K   AT
Sbjct: 166 GYLVNDTVLVEAEVAVR-----KVLDYWSYDSKKETGFVGLKNQGAT 207


>AT3G11910.2 | Symbols: UBP13 | ubiquitin-specific protease 13 |
           chr3:3761758-3770290 REVERSE LENGTH=1114
          Length = 1114

 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 93/157 (59%), Gaps = 7/157 (4%)

Query: 41  KFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHFSLYLMVVDSLP-PFGWS 99
           KFTW I  F++ +T K  S  FV+ GY WRIL+ P   +V H S+YL V D+   P+GWS
Sbjct: 54  KFTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADAANLPYGWS 113

Query: 100 RNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQGYLVSDTCII 158
           R + F+L ++NQV+ + SI KET+ +FN     WG + F+ L +LY+  +GYLV+DT +I
Sbjct: 114 RYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLI 173

Query: 159 EVNICVSAFGFTKIQDIYSLNLPNSTPTNGSKFDQAT 195
           E  + V      K+ D +S +    T   G K   AT
Sbjct: 174 EAEVAVR-----KVLDYWSYDSKKETGFVGLKNQGAT 205


>AT3G11910.1 | Symbols: UBP13 | ubiquitin-specific protease 13 |
           chr3:3761758-3770290 REVERSE LENGTH=1115
          Length = 1115

 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 93/157 (59%), Gaps = 7/157 (4%)

Query: 41  KFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHFSLYLMVVDSLP-PFGWS 99
           KFTW I  F++ +T K  S  FV+ GY WRIL+ P   +V H S+YL V D+   P+GWS
Sbjct: 55  KFTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADAANLPYGWS 114

Query: 100 RNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQGYLVSDTCII 158
           R + F+L ++NQV+ + SI KET+ +FN     WG + F+ L +LY+  +GYLV+DT +I
Sbjct: 115 RYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLI 174

Query: 159 EVNICVSAFGFTKIQDIYSLNLPNSTPTNGSKFDQAT 195
           E  + V      K+ D +S +    T   G K   AT
Sbjct: 175 EAEVAVR-----KVLDYWSYDSKKETGFVGLKNQGAT 206


>AT3G58270.2 | Symbols:  | Arabidopsis phospholipase-like protein
           (PEARLI 4) with TRAF-like domain |
           chr3:21576033-21577655 REVERSE LENGTH=343
          Length = 343

 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 2/126 (1%)

Query: 41  KFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHFSLYLMVVDS-LPPFGWS 99
           KFTW I++FS Q + K  S +F + G  WR+L  P    V+  SLYL V  S   P GW 
Sbjct: 8   KFTWVIKNFSSQQSRKNYSDEFFVDGCKWRLLAFPKGNGVEKLSLYLAVAGSEFLPDGWR 67

Query: 100 RNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQGYLVSDTCII 158
           R+ +F+  ++NQ+  + S  +ETK  F+     WG +  L+L  L+D+  G+LV+    I
Sbjct: 68  RHAYFHFSVVNQLSDELSQARETKNWFDASTSDWGFTSMLSLKKLHDKDGGFLVNGELKI 127

Query: 159 EVNICV 164
            V++ V
Sbjct: 128 VVDVSV 133


>AT3G58270.1 | Symbols:  | Arabidopsis phospholipase-like protein
           (PEARLI 4) with TRAF-like domain |
           chr3:21576033-21577655 REVERSE LENGTH=343
          Length = 343

 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 2/126 (1%)

Query: 41  KFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHFSLYLMVVDS-LPPFGWS 99
           KFTW I++FS Q + K  S +F + G  WR+L  P    V+  SLYL V  S   P GW 
Sbjct: 8   KFTWVIKNFSSQQSRKNYSDEFFVDGCKWRLLAFPKGNGVEKLSLYLAVAGSEFLPDGWR 67

Query: 100 RNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQGYLVSDTCII 158
           R+ +F+  ++NQ+  + S  +ETK  F+     WG +  L+L  L+D+  G+LV+    I
Sbjct: 68  RHAYFHFSVVNQLSDELSQARETKNWFDASTSDWGFTSMLSLKKLHDKDGGFLVNGELKI 127

Query: 159 EVNICV 164
            V++ V
Sbjct: 128 VVDVSV 133


>AT3G58210.1 | Symbols:  | TRAF-like family protein |
           chr3:21562645-21564067 REVERSE LENGTH=330
          Length = 330

 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 71/129 (55%), Gaps = 8/129 (6%)

Query: 41  KFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCP--LRRDVKHFSLYLMVVD--SLPPF 96
           KFTW I++FS   +  + S +FVI G  WR+LV P    +   H SL+L V D  SLPP 
Sbjct: 8   KFTWVIQNFSSSQSRVVPSNQFVIGGCKWRLLVYPEGFNKSGDHLSLFLEVADPRSLPP- 66

Query: 97  GWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQGYLVSD- 154
           GWSR+  + L ++NQ   K S   E  + FN     WG S  + L  L+ +  G+LV+D 
Sbjct: 67  GWSRHARYLLTIVNQHSDKISKRNEATKWFNQKIPGWGLSAMIPLTKLHAKDGGFLVNDE 126

Query: 155 -TCIIEVNI 162
              + EVN+
Sbjct: 127 LKIVAEVNV 135


>AT3G58260.1 | Symbols:  | TRAF-like family protein |
           chr3:21573754-21575114 REVERSE LENGTH=321
          Length = 321

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 13/146 (8%)

Query: 42  FTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHF---SLYLMVVDSLP--PF 96
           FTW I++ S    L++ SK FV+ G  WR++  P   D   +   S+YL V D     P 
Sbjct: 9   FTWVIKNLSTLQGLEVRSKIFVVGGCKWRLIAYPEVNDADGYLSLSVYLGVPDCCESLPS 68

Query: 97  GWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQGYLVSDT 155
           GW R+  F+L ++NQ+    S V+ET+  F+     WG    LNL D+ D+  G+LV+D 
Sbjct: 69  GWKRHAKFSLTIVNQLSEGLSQVQETQAWFDENAPGWGFPPMLNLKDVSDKYGGFLVNDE 128

Query: 156 CIIEVNICVSAFGFTKIQDIYSLNLP 181
            ++ V + V       I+ + SL+ P
Sbjct: 129 VMVAVAVDV-------IEVVGSLDAP 147


>AT2G25320.1 | Symbols:  | TRAF-like family protein |
           chr2:10781951-10788065 REVERSE LENGTH=1673
          Length = 1673

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 12/142 (8%)

Query: 35  TDVNFEKFTWRIEDFSK-QDTLK--------LSSKKFVIRGYTWRILVCPLRRDVK--HF 83
           +D +  KFTWRIE+F++ +D LK        + SK+F I     R++V P  +     H 
Sbjct: 398 SDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSKRFQIGNRDCRLIVYPRGQSQPPCHL 457

Query: 84  SLYLMVVDSLPPFGWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDD 142
           S++L V DS     WS      L ++NQ   + S+ KE++ +++   + WG   F+ L  
Sbjct: 458 SVFLEVTDSRSSSDWSCFVSHRLSVVNQRLEEKSVTKESQNRYSKAAKDWGWREFVTLTS 517

Query: 143 LYDRKQGYLVSDTCIIEVNICV 164
           L+D+  G+LV DT +    + +
Sbjct: 518 LFDQDSGFLVQDTVVFSAEVLI 539



 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 17/133 (12%)

Query: 44  WRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVK----HFSLYLMVVDSLPPFG-- 97
           W +E F++     L SK F + GY  R+LV P R D +    + S+YL ++D   P G  
Sbjct: 75  WTVESFTRVKAKALWSKYFDVGGYDCRLLVYP-RGDSQALPGYISIYLQIMD---PRGTT 130

Query: 98  ---WSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRC--WGSFFLNLDDLYDRKQGYLV 152
              W     + L ++N VD   +I K++  +F+   +   W  F LN   + D K G+L 
Sbjct: 131 SSRWDCFASYRLSIVNLVDDSLTIHKDSWHRFSSKKKSHGWCDFTLN-SSILDPKMGFLF 189

Query: 153 -SDTCIIEVNICV 164
            +D+ +I  +I +
Sbjct: 190 NNDSLLITADILI 202


>AT3G58250.1 | Symbols:  | TRAF-like family protein |
           chr3:21570745-21572143 REVERSE LENGTH=317
          Length = 317

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 74/148 (50%), Gaps = 9/148 (6%)

Query: 40  EKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVK--HFSLYLMVVDSLP-PF 96
           +KF+W I++FS   + K+ S +FVI G  WR+L  P   D K  H SLYL V +S   P 
Sbjct: 9   KKFSWVIKNFSSLQSEKIYSDQFVIDGCRWRLLAFPKGNDTKSDHLSLYLDVAESESLPC 68

Query: 97  GWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWGSFFLNLDDLYDRK---QGYLVS 153
           GW R+  F+  ++N +  K S  KET   F      WG  F NL  L + K    G+LV 
Sbjct: 69  GWRRHAQFSFTIVNHIPEKCSQRKETIHWFCEKVSDWG--FTNLVPLIELKAEDSGFLVK 126

Query: 154 DTCIIEVNICV-SAFGFTKIQDIYSLNL 180
               I V I V    G   + +  S+++
Sbjct: 127 GELKIVVEIEVLEVIGLLNVSESESMDV 154


>AT3G44790.1 | Symbols:  | TRAF-like family protein |
           chr3:16328792-16330265 FORWARD LENGTH=324
          Length = 324

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 7/130 (5%)

Query: 37  VNFEKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHFSLYLMVVDSLP-P 95
           + +EKFTW I++FS   +  ++S KFVI G  W +      ++  + SL+LMV  S   P
Sbjct: 1   MGYEKFTWVIKNFSSLQSKYINSDKFVIGGCKWFL---KGYQNANYLSLFLMVATSKTLP 57

Query: 96  FGWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWGS-FFLNLDDLYDRKQGYLVSD 154
            GW R T F L ++NQ+  + S  +ET+  F+      G+   ++L  L  +K G+LV++
Sbjct: 58  CGWRRYTRFRLTVVNQLSDELSQQRETETWFDQNVVLSGNRHMISLTKLNAKKGGFLVNN 117

Query: 155 TC--IIEVNI 162
               ++EV++
Sbjct: 118 EVKIVVEVDV 127


>AT3G58360.1 | Symbols:  | TRAF-like family protein |
           chr3:21593505-21594866 REVERSE LENGTH=298
          Length = 298

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 41  KFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHFSLYLMVVD--SLPPFGW 98
           K TW IE+FS   + K+ S  F++ G  WR LV P   +V +  LYL V D  SL P  W
Sbjct: 8   KITWAIENFSSLHSKKIYSDPFIVGGCKWRFLVYPKGNNVDYLFLYLEVADYESLSP-EW 66

Query: 99  SRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWGSF-FLNLDDLYDRKQGYLVSDTCI 157
            R+  + L ++NQ   K S   E ++ F+     WG      L+++  +  G+LV+    
Sbjct: 67  RRHARYLLNVVNQNSVKRSKQNEEQKWFDVQSPRWGRLSMFPLNEINAKDSGFLVNGELK 126

Query: 158 IEVNICV 164
           I   I V
Sbjct: 127 IVAEIEV 133


>AT3G58340.1 | Symbols:  | TRAF-like family protein |
           chr3:21589071-21590401 REVERSE LENGTH=325
          Length = 325

 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 41  KFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHFSLYLMVVD--SLPPFGW 98
           KF W I++FS  ++ +  S   VI    WR++  P      + SLYL V D  SLP  GW
Sbjct: 8   KFCWEIKNFSSLNSERCHSVPVVIGDCKWRLVAFPKGYKADYLSLYLEVADFKSLPS-GW 66

Query: 99  SRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQGYLVSDTCI 157
            R   F   ++NQ+ ++ S+ +ET++ F+     WG    L L +L  +  G+LV+   +
Sbjct: 67  RRYVKFRACIVNQLSQELSVQQETQRWFDQNAPGWGFENMLLLTELNAKDGGFLVNGQVM 126

Query: 158 I 158
           I
Sbjct: 127 I 127


>AT3G58200.1 | Symbols:  | TRAF-like family protein |
           chr3:21560086-21561358 REVERSE LENGTH=319
          Length = 319

 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 41  KFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLR-RDVKHFSLYLMVVD-SLPPFGW 98
           KF W I++FS   + ++ S  FV+    WR++  P   RD + FSL+L+V D    P  W
Sbjct: 8   KFRWVIKNFSSLGSERVFSDIFVVGSCKWRLMAYPKGVRDNRCFSLFLVVTDFKTLPCDW 67

Query: 99  SRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWGSF-FLNLDDLYDRKQGYL 151
            R+T   L ++NQ+  + SI+KET+  F+     WG    L L +L     G+L
Sbjct: 68  KRHTRLRLNVVNQLSEELSILKETQMWFDQKTPAWGFLAMLPLTELKAENGGFL 121


>AT3G58220.2 | Symbols:  | TRAF-like family protein |
           chr3:21564677-21566435 REVERSE LENGTH=453
          Length = 453

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 41  KFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPL-RRDVKHFSLYLMVVDSLP-PFGW 98
           +F+W I+DFS      + S +FVI G  WR++  P+  R  K+ SLY+ V DS   P GW
Sbjct: 12  EFSWVIKDFSSLGVRAIYSDEFVIGGCKWRLIAYPMGNRIKKYMSLYVEVADSKHLPSGW 71

Query: 99  SRNTFFNLVLINQVDRKNSIVKETKQK------FNGGHRCWGSFFLNLDDLYDRKQGYLV 152
           S NT   + ++N     +++ K ++QK      F+     WG   +        ++G+LV
Sbjct: 72  SINTELRMEVVN-----HNLYKPSQQKYRKNLWFDQKTPSWGYKTMIRHSKLSGEEGFLV 126

Query: 153 SDTCIIEVNICV 164
           S    I V I V
Sbjct: 127 SGEVTIVVKIDV 138


>AT3G58220.1 | Symbols:  | TRAF-like family protein |
           chr3:21565173-21566435 REVERSE LENGTH=351
          Length = 351

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 41  KFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPL-RRDVKHFSLYLMVVDSLP-PFGW 98
           +F+W I+DFS      + S +FVI G  WR++  P+  R  K+ SLY+ V DS   P GW
Sbjct: 12  EFSWVIKDFSSLGVRAIYSDEFVIGGCKWRLIAYPMGNRIKKYMSLYVEVADSKHLPSGW 71

Query: 99  SRNTFFNLVLINQVDRKNSIVKETKQK------FNGGHRCWGSFFLNLDDLYDRKQGYLV 152
           S NT   + ++N     +++ K ++QK      F+     WG   +        ++G+LV
Sbjct: 72  SINTELRMEVVN-----HNLYKPSQQKYRKNLWFDQKTPSWGYKTMIRHSKLSGEEGFLV 126

Query: 153 SDTCIIEVNICV 164
           S    I V I V
Sbjct: 127 SGEVTIVVKIDV 138


>AT2G05420.1 | Symbols:  | TRAF-like family protein |
           chr2:1983901-1985341 FORWARD LENGTH=297
          Length = 297

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 11/131 (8%)

Query: 33  LATDVNFEKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCP--------LRRDVKHFS 84
           +   V+ +  TW IE+FS   +  + S +FV+    WR+   P        L     + +
Sbjct: 1   MGKQVDSKTITWVIENFSSLQSASIHSDQFVVGDCKWRLKAYPKGNEKATYLAYRANNLA 60

Query: 85  LYLMVVDSLP-PFGWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDD 142
           LYL V +S   P GW+R+T F+L L+NQ   K S + E++  F+      G    + L +
Sbjct: 61  LYLNVANSKSFPIGWTRHTKFSLTLVNQKSEKLSKLTESQHWFDHKSTSRGFPAMIPLTN 120

Query: 143 LYDRKQGYLVS 153
           L+   +G+LV+
Sbjct: 121 LHTN-EGFLVN 130


>AT3G58350.1 | Symbols: RTM3 | RESTRICTED TEV MOVEMENT 3 |
           chr3:21591618-21592836 REVERSE LENGTH=301
          Length = 301

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 5/130 (3%)

Query: 40  EKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPL-RRDVKHFSLYLMV-VDSLPPFG 97
           +K TW I++F+   +  + S  FV+ G  W +   P    +    SL+L V V +  P G
Sbjct: 7   KKITWTIKNFASLLSDLIYSDHFVVGGCKWHLRAYPKGYNNANSLSLFLGVAVPTSLPSG 66

Query: 98  WSRNTFFNLVLINQVDRK--NSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQGYLVSD 154
           W R+T F L L+NQ+  K   S + E +Q F+     WG S    L++++ +  G+L++ 
Sbjct: 67  WRRHTKFRLTLVNQLSDKLSQSKLNELEQWFDEKTTNWGLSSMCPLNEIHAKDSGFLLNG 126

Query: 155 TCIIEVNICV 164
              I V I V
Sbjct: 127 ELKIVVEIKV 136


>AT5G52330.1 | Symbols:  | TRAF-like superfamily protein |
           chr5:21247596-21249732 REVERSE LENGTH=397
          Length = 397

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 10/131 (7%)

Query: 39  FEKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDV-KHFSLYLMVV--DSLPP 95
           + K TW+I+ FS+    + +S  F I GY+W IL+ P   DV  H SL+L V   D L P
Sbjct: 18  YGKNTWKIKKFSQISKREFASSVFEIGGYSWHILMYPEGCDVSNHLSLFLCVANHDELLP 77

Query: 96  FGWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQGYLVSD 154
            GWS+   F + ++++ D K S   +T  +F      WG   F+ L  L D   G++   
Sbjct: 78  -GWSQLAQFTISVMHK-DPKKSKFSDTLHRFWKKEHDWGWKKFMELPKLRD---GFIDDS 132

Query: 155 TCI-IEVNICV 164
            C+ IE  + V
Sbjct: 133 GCLTIETKVQV 143


>AT5G43560.2 | Symbols:  | TRAF-like superfamily protein |
           chr5:17501043-17505526 FORWARD LENGTH=1055
          Length = 1055

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 11/124 (8%)

Query: 39  FEKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDV-KHFSLYLMVVDS---LP 94
           F K TW IE FS  +  +L    F + GY W IL+ P   DV  H SL+L V      LP
Sbjct: 68  FGKNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQGCDVCNHLSLFLCVAHHEKLLP 127

Query: 95  PFGWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQGYLVS 153
             GWS    F + + N+ D K S   +T  +F      WG   F+ L  L   K+G++  
Sbjct: 128 --GWSHFAQFTIAVSNK-DPKKSKHSDTLHRFWKKEHDWGWKKFIELPKL---KEGFIDD 181

Query: 154 DTCI 157
             C+
Sbjct: 182 SGCL 185


>AT5G43560.1 | Symbols:  | TRAF-like superfamily protein |
           chr5:17501043-17505526 FORWARD LENGTH=1055
          Length = 1055

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 11/124 (8%)

Query: 39  FEKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDV-KHFSLYLMVVDS---LP 94
           F K TW IE FS  +  +L    F + GY W IL+ P   DV  H SL+L V      LP
Sbjct: 68  FGKNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQGCDVCNHLSLFLCVAHHEKLLP 127

Query: 95  PFGWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQGYLVS 153
             GWS    F + + N+ D K S   +T  +F      WG   F+ L  L   K+G++  
Sbjct: 128 --GWSHFAQFTIAVSNK-DPKKSKHSDTLHRFWKKEHDWGWKKFIELPKL---KEGFIDD 181

Query: 154 DTCI 157
             C+
Sbjct: 182 SGCL 185


>AT1G04300.1 | Symbols:  | TRAF-like superfamily protein |
           chr1:1148818-1153895 REVERSE LENGTH=1074
          Length = 1074

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 10/131 (7%)

Query: 39  FEKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDV-KHFSLYLMVV--DSLPP 95
           + ++TW+I  FS+    +  S  F   GY W IL+ P   DV  H SL+L V   D L P
Sbjct: 67  YGQYTWKIPKFSEITKREHRSNVFEAGGYKWYILIYPQGCDVCNHLSLFLCVANYDKLLP 126

Query: 96  FGWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQGYLVSD 154
            GWS+   F + +++Q D K S   +T  +F      WG   F+ L  L D   G++   
Sbjct: 127 -GWSQFAQFTISVLSQ-DLKKSKFSDTLHRFWKKEHDWGWKKFMELPKLKD---GFIDES 181

Query: 155 TCI-IEVNICV 164
            C+ IE  + V
Sbjct: 182 GCLTIEAKVQV 192


>AT3G58240.1 | Symbols:  | TRAF-like superfamily protein |
           chr3:21568530-21569827 REVERSE LENGTH=317
          Length = 317

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 2/126 (1%)

Query: 41  KFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHF-SLYLMVVDS-LPPFGW 98
           KFTW I++F       + S +F+I G  W IL    +RD   F  L L +VD    P  W
Sbjct: 8   KFTWVIKNFCSVSPKPIYSDQFLIGGNKWHILAYSKKRDGHQFLCLDLELVDCEFLPSEW 67

Query: 99  SRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWGSFFLNLDDLYDRKQGYLVSDTCII 158
            +    +  ++N   +K S     K  FN   R  G    +L +L D+K G+LV     I
Sbjct: 68  RKVVKVSFTVVNFFSKKLSRQIGLKHCFNKKERSKGGSLFHLSELTDKKSGFLVDGEVEI 127

Query: 159 EVNICV 164
              I V
Sbjct: 128 VAQITV 133


>AT2G25330.1 | Symbols:  | TRAF-like family protein |
           chr2:10788946-10791331 REVERSE LENGTH=693
          Length = 693

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 15/136 (11%)

Query: 41  KFTWRIEDFS---------KQDTLKLSSKKFVIRGYTWRILVCPLRRD--VKHFSLYLMV 89
           KF+WRIE+F+         K   L + SK+F I     R++V P  +     H S++L V
Sbjct: 359 KFSWRIENFTSLVDLLEKRKITGLYIKSKRFQIGNRDCRLIVYPRGQSQPPSHLSIFLEV 418

Query: 90  VDSLPPFGWSRNTFFN--LVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDR 146
            DS        + F +  L ++NQ   + S+ KE++ +F+   + WG   F+ L  L+D+
Sbjct: 419 TDSRSSSS-DWSCFVSHRLSVVNQRSEEKSVTKESQNRFSKAEKDWGWREFVTLTSLFDQ 477

Query: 147 KQGYLVSDTCIIEVNI 162
             G+LV D+ +  V +
Sbjct: 478 DSGFLVQDSVVFSVEV 493



 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 17/133 (12%)

Query: 44  WRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVK----HFSLYLMVVDSLPPFG-- 97
           W +E F++     L SK F + GY  R+LV P R D +      S+YL ++D   P G  
Sbjct: 50  WTVESFTRVKAKALWSKYFDVGGYDCRLLVYP-RGDSQALPGSISIYLQIID---PRGTS 105

Query: 98  ---WSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRC--WGSFFLNLDDLYDRKQGYLV 152
              W     + L +IN VD   +I K +  +F+   R   W  F LN   + D K G+L 
Sbjct: 106 SSLWDCFASYQLSIINHVDDSLTIRKNSWHRFSNKKRSHGWCDFTLN-SSVLDPKMGFLF 164

Query: 153 -SDTCIIEVNICV 164
            +D+ +I  +I +
Sbjct: 165 NNDSLLITADIMI 177


>AT3G58410.1 | Symbols:  | TRAF-like family protein |
           chr3:21604871-21606229 REVERSE LENGTH=328
          Length = 328

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 23/132 (17%)

Query: 41  KFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDVKHFSLYLMVVD--SLPPFGW 98
           KF W I++FS     K  S  F I    WR+ + P   +  + SL+L V D  SLP  GW
Sbjct: 29  KFAWVIKNFSSLQCKKFYSVPFQIGDCKWRLSIYPKGNNCDYLSLFLEVADFKSLPS-GW 87

Query: 99  SRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWGSFF-LNLDDLYDRKQGYLVSDTCI 157
            R     L ++             KQ+  G    WG  + L L  L+D K+G+LV+   +
Sbjct: 88  RRYVKLRLYIV-------------KQEMWG----WGFLYMLPLTKLHDEKEGFLVNGELM 130

Query: 158 IEVNICVSAFGF 169
           I     V A GF
Sbjct: 131 IVAE--VDALGF 140


>AT3G58440.1 | Symbols:  | TRAF-like superfamily protein |
           chr3:21618446-21621249 REVERSE LENGTH=601
          Length = 601

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 8/128 (6%)

Query: 40  EKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRIL-VCPLRRDVKHFSLYL-MVVDSLPPFG 97
           +KFTW +E FS     +  S  F + G  WR+L      ++ ++FS+YL +   SLPP G
Sbjct: 9   DKFTWVLEKFSSLKD-QCYSPVFTVAGCNWRLLSFLKGAKNDRYFSVYLDLEPGSLPP-G 66

Query: 98  WSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRKQGYLVSD-- 154
           W R   F++ L N     + ++      F+     WG   FL L+ L +  +G+LV+D  
Sbjct: 67  WRREVKFSITLDNVCPNTDRVLG-GPCFFDAKSNIWGFQDFLLLEKLVNIAEGFLVNDRL 125

Query: 155 TCIIEVNI 162
           T + EV++
Sbjct: 126 TIVAEVDV 133


>AT1G04300.3 | Symbols:  | TRAF-like superfamily protein |
           chr1:1148818-1153895 REVERSE LENGTH=1082
          Length = 1082

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 16/138 (11%)

Query: 39  FEKFTWRIEDFSKQDTLKLSSKKFVIRGYTWRILVCPLRRDV-KHFSLYLMVV--DSLPP 95
           + ++TW+I  FS+    +  S  F   GY W IL+ P   DV  H SL+L V   D L P
Sbjct: 67  YGQYTWKIPKFSEITKREHRSNVFEAGGYKWYILIYPQGCDVCNHLSLFLCVANYDKLLP 126

Query: 96  -------FGWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLYDRK 147
                   GWS+   F + +++Q D K S   +T  +F      WG   F+ L  L D  
Sbjct: 127 GSFAILEAGWSQFAQFTISVLSQ-DLKKSKFSDTLHRFWKKEHDWGWKKFMELPKLKD-- 183

Query: 148 QGYLVSDTCI-IEVNICV 164
            G++    C+ IE  + V
Sbjct: 184 -GFIDESGCLTIEAKVQV 200


>AT3G58290.1 | Symbols:  | TRAF-like superfamily protein |
           chr3:21580572-21581861 REVERSE LENGTH=282
          Length = 282

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 18/134 (13%)

Query: 40  EKFTWRIEDFSKQDTLKLS----SKKFVIRGYTWRILVCP----------LRRDVKHFSL 85
           +KF W I++FS   +L+L     S   +I    WR+   P           + +  H SL
Sbjct: 10  KKFVWVIKNFS---SLQLQDCYVSDPVLIHDVNWRLFAYPEGSNGDHLLFKKNNGDHLSL 66

Query: 86  YLMVVDSLPPFGWSRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWG-SFFLNLDDLY 144
           YL V     P GW + T F   ++NQ+   +S+ +E ++ F+     WG    ++L  L 
Sbjct: 67  YLEVDFESLPCGWRQYTQFRFTVVNQISEHSSVKREGRKWFDKKAPEWGWEEMISLTKLN 126

Query: 145 DRKQGYLVSDTCII 158
           D   G++V+   +I
Sbjct: 127 DINSGFVVNGELMI 140


>AT4G09780.1 | Symbols:  | TRAF-like family protein |
           chr4:6159538-6161378 REVERSE LENGTH=427
          Length = 427

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 20/143 (13%)

Query: 41  KFTWRIEDFSKQDTLKLS-SKKFVIRGYTWRILVCPL-RRDVKHFSLYLMVVDSLPPFGW 98
           KFTW+I DFSK    K   S +FV+    WRI + P   + V+  S+Y+  ++ LP    
Sbjct: 214 KFTWKISDFSKLGDKKYHYSDEFVVGERKWRIKISPKGDKKVRALSVYVQAMEYLPN-AV 272

Query: 99  SRNTFFNLVLINQVDRKNSIVKETKQKFNGGHRCWGSF---------------FLNLDDL 143
           +  T+  L L   +++KN+   E +  +      +  F                ++++DL
Sbjct: 273 ASTTYAKLKL-QLMNQKNTNHIEKRGTYQTSFFLYLVFHFFSREKEDGYGTSELISVEDL 331

Query: 144 YDRKQGYLVSDTCIIEVN-ICVS 165
            D  +GYLV DT ++E   +CV+
Sbjct: 332 NDESKGYLVEDTIVLETTLLCVT 354