Miyakogusa Predicted Gene

Lj0g3v0306559.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0306559.1 tr|G7JYE2|G7JYE2_MEDTR Choline transporter-like
protein 5-A OS=Medicago truncatula GN=MTR_5g054780
P,88.7,0,CTL2-RELATED,NULL; CTL TRANSPORTER,Choline transporter-like;
Choline_transpo,Choline transporter-lik,CUFF.20662.1
         (462 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G25500.2 | Symbols:  | Plasma-membrane choline transporter fa...   573   e-164
AT1G25500.3 | Symbols:  | Plasma-membrane choline transporter fa...   548   e-156
AT1G25500.1 | Symbols:  | Plasma-membrane choline transporter fa...   510   e-145
AT5G13760.1 | Symbols:  | Plasma-membrane choline transporter fa...   127   2e-29
AT3G04440.1 | Symbols:  | Plasma-membrane choline transporter fa...    80   4e-15
AT3G03700.1 | Symbols:  | Plasma-membrane choline transporter fa...    80   4e-15
AT5G17830.1 | Symbols:  | Plasma-membrane choline transporter fa...    59   1e-08

>AT1G25500.2 | Symbols:  | Plasma-membrane choline transporter
           family protein | chr1:8955437-8957793 REVERSE LENGTH=488
          Length = 488

 Score =  573 bits (1478), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 303/449 (67%), Positives = 349/449 (77%), Gaps = 1/449 (0%)

Query: 1   MEQRRRWHDLFWLGLFVIQXXXXXXXXXXXXXNRFKKKDRLDIDKYTYRFMENQPGLTED 60
           + + R WHD+FW  +FVI              NRF+  DRL+ID+YT  F+EN  GLTED
Sbjct: 38  VRESRHWHDVFWSAIFVIHLICLGFVLAVLGLNRFRISDRLNIDRYTQGFLENHKGLTED 97

Query: 61  YWPLYAVAGGVGTAXXXXXXXXXXXRAIQMMKVSVHILTTYLAVISVLCXXXXXXXXXXX 120
           YWPLYAVAGG+G              A +MMKVSVHILTTYLAV+SVLC           
Sbjct: 98  YWPLYAVAGGIGVFISWVWSLLLGSYANEMMKVSVHILTTYLAVVSVLCFWCRLFFWGGA 157

Query: 121 XXXXXXLQFLYVISVIDRLPFTMLVLQKAAKIVWNLPEVMRVAYAFLLAVLLWMALWSFG 180
                 LQFLYVISVIDRLPFTMLVL+KA K+VW LP+V+ VA+AF + +LLWM+LWSFG
Sbjct: 158 FAVGSLLQFLYVISVIDRLPFTMLVLRKALKLVWGLPKVIMVAHAFTVVMLLWMSLWSFG 217

Query: 181 AAGVVASSMGDGGRWWXXXXXXXXXFWTGAVLCNTVHVIVSGTVVLVSIH-GGSEVASMP 239
           AAGVVASSMGD GRWW         FWTGAVLCNTVHVIVSG V  V  H G  E +S+P
Sbjct: 218 AAGVVASSMGDEGRWWLLVVLSVSLFWTGAVLCNTVHVIVSGMVFHVLFHCGQEESSSLP 277

Query: 240 TNSVLKSLQYALTTSFGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLV 299
            +S++ SL+YA+TTSFGSICYGSLFTAAIRTLRWEIRG RSKI  NECLLCCVDFLFHLV
Sbjct: 278 PSSLVDSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGFRSKICGNECLLCCVDFLFHLV 337

Query: 300 ETLVRFFNKYAYVQIGVYGKSFNHSARDAWELFQSTGVEAIVAYDCSGAVLLMGTICSGL 359
           ETLVRFFNKYAYVQI VYGK FN SARDAWELFQSTGVEA+VAYDCSGAVLLMGTI  GL
Sbjct: 338 ETLVRFFNKYAYVQIAVYGKGFNKSARDAWELFQSTGVEALVAYDCSGAVLLMGTIFGGL 397

Query: 360 ITGTCSGVWAWIKWRDRALMIGSTSMLMGMILVGVAMVLVESAVTSIYICYAEDPLLIQK 419
           ITG+C G+WAWIK+ DR +M+ ST+MLMGM+LVG+ MV+VESAVTSIYIC+AEDPLLIQ+
Sbjct: 398 ITGSCIGIWAWIKYSDRVIMVASTAMLMGMVLVGLGMVVVESAVTSIYICFAEDPLLIQR 457

Query: 420 WDPDFFNQISETLHQRLKYRSSRGKKVLT 448
           WD DF+ ++SE LH+RL++RSSR ++VLT
Sbjct: 458 WDADFYTEMSEVLHRRLQHRSSRAREVLT 486


>AT1G25500.3 | Symbols:  | Plasma-membrane choline transporter
           family protein | chr1:8955437-8957294 REVERSE LENGTH=430
          Length = 430

 Score =  548 bits (1411), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 290/412 (70%), Positives = 328/412 (79%), Gaps = 1/412 (0%)

Query: 38  KDRLDIDKYTYRFMENQPGLTEDYWPLYAVAGGVGTAXXXXXXXXXXXRAIQMMKVSVHI 97
            DRL+ID+YT  F+EN  GLTEDYWPLYAVAGG+G              A +MMKVSVHI
Sbjct: 17  SDRLNIDRYTQGFLENHKGLTEDYWPLYAVAGGIGVFISWVWSLLLGSYANEMMKVSVHI 76

Query: 98  LTTYLAVISVLCXXXXXXXXXXXXXXXXXLQFLYVISVIDRLPFTMLVLQKAAKIVWNLP 157
           LTTYLAV+SVLC                 LQFLYVISVIDRLPFTMLVL+KA K+VW LP
Sbjct: 77  LTTYLAVVSVLCFWCRLFFWGGAFAVGSLLQFLYVISVIDRLPFTMLVLRKALKLVWGLP 136

Query: 158 EVMRVAYAFLLAVLLWMALWSFGAAGVVASSMGDGGRWWXXXXXXXXXFWTGAVLCNTVH 217
           +V+ VA+AF + +LLWM+LWSFGAAGVVASSMGD GRWW         FWTGAVLCNTVH
Sbjct: 137 KVIMVAHAFTVVMLLWMSLWSFGAAGVVASSMGDEGRWWLLVVLSVSLFWTGAVLCNTVH 196

Query: 218 VIVSGTVVLVSIHGGSEVASMPTNSV-LKSLQYALTTSFGSICYGSLFTAAIRTLRWEIR 276
           VIVSG V  V  H G E +S    S  + SL+YA+TTSFGSICYGSLFTAAIRTLRWEIR
Sbjct: 197 VIVSGMVFHVLFHCGQEESSSLPPSSLVDSLRYAVTTSFGSICYGSLFTAAIRTLRWEIR 256

Query: 277 GIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIGVYGKSFNHSARDAWELFQSTG 336
           G RSKI  NECLLCCVDFLFHLVETLVRFFNKYAYVQI VYGK FN SARDAWELFQSTG
Sbjct: 257 GFRSKICGNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNKSARDAWELFQSTG 316

Query: 337 VEAIVAYDCSGAVLLMGTICSGLITGTCSGVWAWIKWRDRALMIGSTSMLMGMILVGVAM 396
           VEA+VAYDCSGAVLLMGTI  GLITG+C G+WAWIK+ DR +M+ ST+MLMGM+LVG+ M
Sbjct: 317 VEALVAYDCSGAVLLMGTIFGGLITGSCIGIWAWIKYSDRVIMVASTAMLMGMVLVGLGM 376

Query: 397 VLVESAVTSIYICYAEDPLLIQKWDPDFFNQISETLHQRLKYRSSRGKKVLT 448
           V+VESAVTSIYIC+AEDPLLIQ+WD DF+ ++SE LH+RL++RSSR ++VLT
Sbjct: 377 VVVESAVTSIYICFAEDPLLIQRWDADFYTEMSEVLHRRLQHRSSRAREVLT 428


>AT1G25500.1 | Symbols:  | Plasma-membrane choline transporter
           family protein | chr1:8955595-8957793 REVERSE LENGTH=432
          Length = 432

 Score =  510 bits (1314), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/392 (66%), Positives = 293/392 (74%), Gaps = 1/392 (0%)

Query: 1   MEQRRRWHDLFWLGLFVIQXXXXXXXXXXXXXNRFKKKDRLDIDKYTYRFMENQPGLTED 60
           + + R WHD+FW  +FVI              NRF+  DRL+ID+YT  F+EN  GLTED
Sbjct: 38  VRESRHWHDVFWSAIFVIHLICLGFVLAVLGLNRFRISDRLNIDRYTQGFLENHKGLTED 97

Query: 61  YWPLYAVAGGVGTAXXXXXXXXXXXRAIQMMKVSVHILTTYLAVISVLCXXXXXXXXXXX 120
           YWPLYAVAGG+G              A +MMKVSVHILTTYLAV+SVLC           
Sbjct: 98  YWPLYAVAGGIGVFISWVWSLLLGSYANEMMKVSVHILTTYLAVVSVLCFWCRLFFWGGA 157

Query: 121 XXXXXXLQFLYVISVIDRLPFTMLVLQKAAKIVWNLPEVMRVAYAFLLAVLLWMALWSFG 180
                 LQFLYVISVIDRLPFTMLVL+KA K+VW LP+V+ VA+AF + +LLWM+LWSFG
Sbjct: 158 FAVGSLLQFLYVISVIDRLPFTMLVLRKALKLVWGLPKVIMVAHAFTVVMLLWMSLWSFG 217

Query: 181 AAGVVASSMGDGGRWWXXXXXXXXXFWTGAVLCNTVHVIVSGTVVLVSIHGGSEVASMPT 240
           AAGVVASSMGD GRWW         FWTGAVLCNTVHVIVSG V  V  H G E +S   
Sbjct: 218 AAGVVASSMGDEGRWWLLVVLSVSLFWTGAVLCNTVHVIVSGMVFHVLFHCGQEESSSLP 277

Query: 241 NSV-LKSLQYALTTSFGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLV 299
            S  + SL+YA+TTSFGSICYGSLFTAAIRTLRWEIRG RSKI  NECLLCCVDFLFHLV
Sbjct: 278 PSSLVDSLRYAVTTSFGSICYGSLFTAAIRTLRWEIRGFRSKICGNECLLCCVDFLFHLV 337

Query: 300 ETLVRFFNKYAYVQIGVYGKSFNHSARDAWELFQSTGVEAIVAYDCSGAVLLMGTICSGL 359
           ETLVRFFNKYAYVQI VYGK FN SARDAWELFQSTGVEA+VAYDCSGAVLLMGTI  GL
Sbjct: 338 ETLVRFFNKYAYVQIAVYGKGFNKSARDAWELFQSTGVEALVAYDCSGAVLLMGTIFGGL 397

Query: 360 ITGTCSGVWAWIKWRDRALMIGSTSMLMGMIL 391
           ITG+C G+WAWIK+ DR +M+ ST+MLMGM+L
Sbjct: 398 ITGSCIGIWAWIKYSDRVIMVASTAMLMGMVL 429


>AT5G13760.1 | Symbols:  | Plasma-membrane choline transporter
           family protein | chr5:4442102-4444565 FORWARD LENGTH=569
          Length = 569

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 129/285 (45%), Gaps = 11/285 (3%)

Query: 130 LYVISVIDRLPFTMLVLQKAAKIVWNLPEVMRVAYAFLLAVLLWMALWSFGAAGVVASSM 189
           LY   V  R+ F   +L K+ + V    ++    Y  L A  LWM++W FG  G +    
Sbjct: 260 LYACWVTRRIKFCSKILVKSLEPVSKFSDLNLPTYYMLAAGFLWMSMWIFGVIGALNFYF 319

Query: 190 GDGGRWWXXXXXXXXXFWTGAVLCNTVHVIVSGTVVLVSIHGGSEVASMPTNSVLKSLQY 249
                            WT  V+ N V++ VS  + L  + G         +S   S Q 
Sbjct: 320 PP----LVIIGLVLSLAWTTEVMRNIVNLTVSRVIALYYLRGMQ-------SSTRFSFQR 368

Query: 250 ALTTSFGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKY 309
           AL+ + GS C GSLF   I  LR   RG+    G +E + CC +    L++ +    N +
Sbjct: 369 ALSRNLGSACLGSLFVPTIEALRILARGLNLLKGEDEFMFCCANCCLRLMDFIFEHGNGW 428

Query: 310 AYVQIGVYGKSFNHSARDAWELFQSTGVEAIVAYDCSGAVLLMGTICSGLITGTCSGVWA 369
           A+VQI  YGK F  +++D W+LF+   +  IV  D + ++  +  ICSG +    +  W 
Sbjct: 429 AFVQIAAYGKGFVRASQDTWKLFEDEDMVEIVDADITSSICFLTGICSGCVCLIVAAAWT 488

Query: 370 WIKWRDRALMIGSTSMLMGMILVGVAMVLVESAVTSIYICYAEDP 414
              ++     I   +  +G ++  ++M L  + V   Y CYAE+P
Sbjct: 489 HTVYKPFTATISLLAFFIGYLMTRISMALPHACVGCYYTCYAENP 533


>AT3G04440.1 | Symbols:  | Plasma-membrane choline transporter
           family protein | chr3:1178718-1180537 FORWARD LENGTH=482
          Length = 482

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 9/210 (4%)

Query: 207 WTGAVLCNTVHVIVSGTVVLVSIHGGSEVASMPTNSVLKSLQYALTTSFGSICYGSLFTA 266
           WT  V+ N   V +S    +   HG    A       +K L        GSIC GS    
Sbjct: 238 WTMQVIKNVQQVAISRARYVNFAHGEDMDAWNAFRITMKHLT-------GSICVGSTLVP 290

Query: 267 AIRTLRWEIRGIRSKIGN-NECLLCCVDFLFHLVETLVRFFNKYAYVQIGVYGKSFNHSA 325
            I  +R  IR +    G+ +E +    D    +   L+   N++ +V +G Y K F  ++
Sbjct: 291 IIVFIRGSIRSVNLMSGSSDEVMYSGADCFSTIANKLITLGNRWGFVHVGTYDKGFMEAS 350

Query: 326 RDAWELFQST-GVEAIVAYDCSGAVLLMGTICSGLITGTCSGVWAWIKWRDRALMIGSTS 384
            D W+ F+ST G+E ++  D + +   +  +  G ++   +G+W  +  +D AL +   +
Sbjct: 351 SDTWKKFRSTTGLEKLIDSDLTSSFCFLSAVSVGAVSSLTAGIWMLLIHKDYALEVTLYA 410

Query: 385 MLMGMILVGVAMVLVESAVTSIYICYAEDP 414
            ++G  +  V +  +++ V + Y+ Y+EDP
Sbjct: 411 FIIGYFVGRVGLAWLQACVLAYYVAYSEDP 440


>AT3G03700.1 | Symbols:  | Plasma-membrane choline transporter
           family protein | chr3:916503-918327 FORWARD LENGTH=482
          Length = 482

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 9/210 (4%)

Query: 207 WTGAVLCNTVHVIVSGTVVLVSIHGGSEVASMPTNSVLKSLQYALTTSFGSICYGSLFTA 266
           WT  V+ N   V +S    +   HG    A       +K L        GSIC GS    
Sbjct: 238 WTMQVIKNVQQVAISRARYVNFAHGEDMDAWNAFRITMKHLT-------GSICVGSTLVP 290

Query: 267 AIRTLRWEIRGIRSKIGN-NECLLCCVDFLFHLVETLVRFFNKYAYVQIGVYGKSFNHSA 325
            I  +R  IR +    G+ +E +    D    +   L+   N++ +V +G Y K F  ++
Sbjct: 291 IIVFIRGSIRSVNLMSGSSDEVMYSGADCFSTIANKLITLGNRWGFVHVGTYDKGFMEAS 350

Query: 326 RDAWELFQST-GVEAIVAYDCSGAVLLMGTICSGLITGTCSGVWAWIKWRDRALMIGSTS 384
            D W+ F+ST G+E ++  D + +   +  +  G ++   +G+W  +  +D AL +   +
Sbjct: 351 SDTWKKFRSTTGLEKLIDSDLTSSFCFLSAVSVGAVSSLTAGIWMLLIHKDYALEVTLYA 410

Query: 385 MLMGMILVGVAMVLVESAVTSIYICYAEDP 414
            ++G  +  V +  +++ V + Y+ Y+EDP
Sbjct: 411 FIIGYFVGRVGLAWLQACVLAYYVAYSEDP 440


>AT5G17830.1 | Symbols:  | Plasma-membrane choline transporter
           family protein | chr5:5893382-5895367 FORWARD LENGTH=474
          Length = 474

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 91/218 (41%), Gaps = 31/218 (14%)

Query: 245 KSLQYALTTSFGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFH------- 297
            +L   L    GS+C GS     I   R  IR             CC   ++        
Sbjct: 270 DALGVTLKKQLGSVCIGSTLVPLIVLFRGTIR-------------CCNRDIYASTPGCNW 316

Query: 298 LVETLVRFFNKYAYVQIGVYGKSFNHSARDAWELFQS-TGVEAIVAYDCSGAVLLMGTIC 356
           +   ++   N+Y +V +G + K    ++ D W  F++    E ++ +D + ++     + 
Sbjct: 317 IANHIILGGNRYGFVHVGAHNKGLRQASSDTWRRFRTIPEFEQLIDFDITSSICFFSAMG 376

Query: 357 SGLITGTCSGVWAWIKWRDRALMIGSTSMLMGMILVGVAMVLVESAVTSIYICYAEDPLL 416
            G I    +GVW  +  +D    +   + ++G  +  V+   +++ V   Y+ Y+EDP  
Sbjct: 377 IGAIAALTAGVWELLIDKDHYFELTIYAFIIGYFVGRVSSAWLQACVMGYYVAYSEDP-- 434

Query: 417 IQKWDPDFFNQISETLHQRL-KYRSSRGKKVLTHNLLE 453
                 D F+   +T+ QR+ + +  + K+ +  N ++
Sbjct: 435 ----QNDRFD---DTIPQRIERQKIEKAKREVEDNRVQ 465