Miyakogusa Predicted Gene

Lj0g3v0306549.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0306549.1 tr|A9TLR6|A9TLR6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_108397,35.15,7e-17,no description,YqgF/RNase H-like
domain; Likely ribonuclease with RNase H fold.,YqgF/RNase H-like
do,CUFF.20657.1
         (210 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52905.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   184   5e-47

>AT3G52905.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:19614142-19615471
           REVERSE LENGTH=170
          Length = 170

 Score =  184 bits (466), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 117/171 (68%), Gaps = 1/171 (0%)

Query: 40  MRFVQPLQLFHNLAKATQKERGRLIGLDVGDKYVGVALSDFDNKIASPFSVLIRKKSNIG 99
           M++V+PL L  N  K      GR +GLDVGDKYVG+A+SD  N +ASP SVL+RKKSNI 
Sbjct: 1   MKYVKPLSLLGNALKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNID 60

Query: 100 LMASDFETLISKYSLKGFVIGIPFNNFRVSPDAVQVKVLIDALSKTKKLEGLNYTYWNEC 159
           LMA+DF+ L+  +S+ G V+G PF       D V V + I+ L KT+KL+ + YTYW+E 
Sbjct: 61  LMATDFQNLVKAFSVSGLVVGYPFGKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDER 120

Query: 160 FTSQNVGLLLKPLNLNHPVHSKTILDKFAAVGILQGYLDYVNRKMRQQATQ 210
            +S+ V L+LKPLNL HPV  KT+LDK AAV ILQ YLDY NR +  +  +
Sbjct: 121 LSSKTVELMLKPLNL-HPVQEKTMLDKLAAVVILQEYLDYANRYVNTEPAE 170