Miyakogusa Predicted Gene

Lj0g3v0306279.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0306279.1 tr|F4HV88|F4HV88_ARATH Ribosomal protein L18ae
family protein OS=Arabidopsis thaliana GN=At1g54217 P,59.38,2e-19,60S
RIBOSOMAL PROTEIN L18A-RELATED,NULL; 60S RIBOSOMAL PROTEIN
L18A,Ribosomal protein L18a; seg,NULL,CUFF.20635.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26060.1 | Symbols:  | Ribosomal protein L18ae family | chr4:...   106   3e-24
AT5G57060.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   102   4e-23
AT5G57060.2 | Symbols:  | BEST Arabidopsis thaliana protein matc...   102   6e-23
AT1G54217.2 | Symbols:  | Ribosomal protein L18ae family | chr1:...    94   2e-20
AT1G54217.3 | Symbols:  | Ribosomal protein L18ae family | chr1:...    92   5e-20
AT1G54217.1 | Symbols:  | Ribosomal protein L18ae family | chr1:...    92   5e-20

>AT4G26060.1 | Symbols:  | Ribosomal protein L18ae family |
           chr4:13214972-13215955 REVERSE LENGTH=133
          Length = 133

 Score =  106 bits (264), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 53/63 (84%)

Query: 8   NGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFGNYYRKDP 67
            G Y  ++D++  + G +DKPLPCFGCGIGWFSFLLGF FP +WYYAT+LYFGNYYRKDP
Sbjct: 45  KGRYTLVKDVDEVENGVYDKPLPCFGCGIGWFSFLLGFVFPFLWYYATLLYFGNYYRKDP 104

Query: 68  RER 70
           RER
Sbjct: 105 RER 107


>AT5G57060.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: defense response to Gram-negative
           bacterium, cytolysis; LOCATED IN: integral to membrane;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Channel
           forming colicin, C-terminal cytotoxic
           (InterPro:IPR000293); BEST Arabidopsis thaliana protein
           match is: Ribosomal protein L18ae family
           (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:23090666-23091796 FORWARD LENGTH=137
          Length = 137

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 51/69 (73%)

Query: 2   DTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFGN 61
           D        Y  ++D++  + G +DKPLPCFGCGIGWFSFLLGF FP +WYYA  LYFGN
Sbjct: 40  DAMARGKKRYTLVKDVDDMETGAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFGN 99

Query: 62  YYRKDPRER 70
           YYRKDPRER
Sbjct: 100 YYRKDPRER 108


>AT5G57060.2 | Symbols:  | BEST Arabidopsis thaliana protein match
          is: Ribosomal protein L18ae family (TAIR:AT4G26060.1);
          Has 35333 Blast hits to 34131 proteins in 2444 species:
          Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
          991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
          (source: NCBI BLink). | chr5:23091072-23091796 FORWARD
          LENGTH=110
          Length = 110

 Score =  102 bits (253), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 51/69 (73%)

Query: 2  DTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFGN 61
          D        Y  ++D++  + G +DKPLPCFGCGIGWFSFLLGF FP +WYYA  LYFGN
Sbjct: 13 DAMARGKKRYTLVKDVDDMETGAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFGN 72

Query: 62 YYRKDPRER 70
          YYRKDPRER
Sbjct: 73 YYRKDPRER 81


>AT1G54217.2 | Symbols:  | Ribosomal protein L18ae family |
          chr1:20244346-20245005 REVERSE LENGTH=103
          Length = 103

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 2  DTADERNGEYAPIRD-LEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFG 60
          D  +++ G+Y  IRD  E  +LG+F KPLPCFG GIGWFSFLLGF FP  WY AT LY  
Sbjct: 5  DLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 64

Query: 61 NYYRKDPRERXXXXXXXXXXXXXXXXVMITIFVII 95
          +YY +DPRER                ++IT+ V++
Sbjct: 65 SYYHRDPRERSGLAASAIAALIFSVALVITVLVLV 99


>AT1G54217.3 | Symbols:  | Ribosomal protein L18ae family |
          chr1:20244346-20245005 REVERSE LENGTH=102
          Length = 102

 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 2  DTADERNGEYAPIRD-LEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFG 60
          +  +++ G+Y  IRD  E  +LG+F KPLPCFG GIGWFSFLLGF FP  WY AT LY  
Sbjct: 4  NLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 63

Query: 61 NYYRKDPRERXXXXXXXXXXXXXXXXVMITIFVII 95
          +YY +DPRER                ++IT+ V++
Sbjct: 64 SYYHRDPRERSGLAASAIAALIFSVALVITVLVLV 98


>AT1G54217.1 | Symbols:  | Ribosomal protein L18ae family |
          chr1:20244346-20245005 REVERSE LENGTH=102
          Length = 102

 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 2  DTADERNGEYAPIRD-LEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFG 60
          +  +++ G+Y  IRD  E  +LG+F KPLPCFG GIGWFSFLLGF FP  WY AT LY  
Sbjct: 4  NLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 63

Query: 61 NYYRKDPRERXXXXXXXXXXXXXXXXVMITIFVII 95
          +YY +DPRER                ++IT+ V++
Sbjct: 64 SYYHRDPRERSGLAASAIAALIFSVALVITVLVLV 98