Miyakogusa Predicted Gene

Lj0g3v0305119.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0305119.1 tr|B7K9T0|B7K9T0_CYAP7 Probable dual-specificity
RNA methyltransferase RlmN OS=Cyanothece sp.
(strai,44.76,7e-19,seg,NULL; 23S RRNA
METHYLTRANSFERASE,NULL,CUFF.20530.1
         (234 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60230.1 | Symbols:  | Radical SAM superfamily protein | chr1...   244   5e-65
AT3G19630.1 | Symbols:  | Radical SAM superfamily protein | chr3...    67   1e-11
AT2G39670.1 | Symbols:  | Radical SAM superfamily protein | chr2...    66   2e-11
AT2G39670.2 | Symbols:  | Radical SAM superfamily protein | chr2...    65   4e-11

>AT1G60230.1 | Symbols:  | Radical SAM superfamily protein |
           chr1:22212223-22214346 REVERSE LENGTH=458
          Length = 458

 Score =  244 bits (622), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 107/134 (79%), Positives = 126/134 (94%)

Query: 101 EVLLKGLTYPELEKWVQSHGYRPGQAMMLWKRIYGNNIWANHVDELEGINKDFKKMLSEN 160
           +V+LKG+TY  L++WVQSHG+RPGQA+MLWKR+Y +NIWAN+VDELEG+NKD K+M+SE+
Sbjct: 94  KVVLKGMTYASLQEWVQSHGFRPGQALMLWKRLYKDNIWANNVDELEGLNKDLKRMISEH 153

Query: 161 AKFKALALKEIHTASDGTRKILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFC 220
           A+F AL+ K+I +ASDGTRKILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFC
Sbjct: 154 AEFGALSFKDIRSASDGTRKILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFC 213

Query: 221 YTGRMGLKRHLTAA 234
           YTGRMGLKR+LT A
Sbjct: 214 YTGRMGLKRNLTTA 227


>AT3G19630.1 | Symbols:  | Radical SAM superfamily protein |
           chr3:6818676-6820674 REVERSE LENGTH=372
          Length = 372

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 24/142 (16%)

Query: 111 ELEKWVQSHGYRPGQAMMLWKRIYGNN--IWANHVDELEGINKDFKKMLSENAKFKALAL 168
           E++   +S G  P  A+ +WK +  N   +W    DE+  +      +L  ++KFK L  
Sbjct: 11  EIKSEFESAGINPKFAIQIWKYVIQNPDCVW----DEIPSLPSAAYSLL--HSKFKTLTS 64

Query: 169 KEIHTAS--DGT-RKILFTLDDGLVIETVVIPCDRG-------------RTTVCVSSQVG 212
                    DGT  K+L  L +G  +E VV+  D               R+T+C+SSQVG
Sbjct: 65  SLHSLFHSSDGTTSKLLIKLQNGAFVEAVVMRYDTRLGMLGGKPRPGGIRSTLCISSQVG 124

Query: 213 CAMNCQFCYTGRMGLKRHLTAA 234
           C M C FC TG MG K +LT+ 
Sbjct: 125 CKMGCTFCATGTMGFKSNLTSG 146


>AT2G39670.1 | Symbols:  | Radical SAM superfamily protein |
           chr2:16534303-16536986 FORWARD LENGTH=428
          Length = 428

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 8/135 (5%)

Query: 103 LLKGLTYPELEKWVQSHGYRPGQAMMLWKRIYGNNIWANHVDELEGINKDFKKMLSENA- 161
           +L G++ PEL++   + G    +   L   IY   +  N V++   +   F+K L +   
Sbjct: 63  VLIGMSEPELQELAINLGQEGYRGKQLHHLIYKRKV--NKVEDFSNLPLTFRKGLVDGGF 120

Query: 162 KFKALALKEIHTASDGTRKILFTLDDGLVIETVVIPC---DRG--RTTVCVSSQVGCAMN 216
           K     + +  TA+DGT K+L  L+D L+IETV IP    ++G  R T CVSSQVGC + 
Sbjct: 121 KVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQVGCPLR 180

Query: 217 CQFCYTGRMGLKRHL 231
           C FC TG+ G  R+L
Sbjct: 181 CSFCATGKGGFSRNL 195


>AT2G39670.2 | Symbols:  | Radical SAM superfamily protein |
           chr2:16534303-16536986 FORWARD LENGTH=431
          Length = 431

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 17/141 (12%)

Query: 103 LLKGLTYPELEKW------VQSHGYRPGQAMMLWKRIYGNNIWANHVDELEGINKDFKKM 156
           +L G++ PEL++       +   GYR  Q   L   IY   +  N V++   +   F+K 
Sbjct: 63  VLIGMSEPELQELAINLVLIFQEGYRGKQ---LHHLIYKRKV--NKVEDFSNLPLTFRKG 117

Query: 157 LSENA-KFKALALKEIHTASDGTRKILFTLDDGLVIETVVIPC---DRG--RTTVCVSSQ 210
           L +   K     + +  TA+DGT K+L  L+D L+IETV IP    ++G  R T CVSSQ
Sbjct: 118 LVDGGFKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQ 177

Query: 211 VGCAMNCQFCYTGRMGLKRHL 231
           VGC + C FC TG+ G  R+L
Sbjct: 178 VGCPLRCSFCATGKGGFSRNL 198