Miyakogusa Predicted Gene

Lj0g3v0305089.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0305089.1 tr|G7JK31|G7JK31_MEDTR Replication protein A 70
kDa DNA-binding subunit OS=Medicago truncatula
GN=MT,24.83,1e-18,DUF223,Domain of unknown function DUF223;
REPLICATION FACTOR A 1, RFA1,NULL; Nucleic acid-binding
pr,CUFF.20527.1
         (285 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52950.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    84   1e-16
AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    67   1e-11
AT1G14800.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    52   4e-07
AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A p...    48   7e-06

>AT1G52950.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:19725483-19728007 FORWARD LENGTH=566
          Length = 566

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 119/285 (41%), Gaps = 26/285 (9%)

Query: 5   YDKIASLNPIRDNWNILVRVIRFWTIRVGGQTTEIDMILMDDKGSRIQATVNKHIATKYD 64
           Y  I +L P + +W I V+++  W     G     +M+L D+ G++IQA + K    K  
Sbjct: 7   YTAIKNLKPFKTSWCIQVKILHAWNHYTKGSGMSYEMMLADEDGNKIQAGIKKEHLLKLQ 66

Query: 65  KLIREGAVYAIQNFTLANNTGGFKVADHEYKITIQGETIALLQYDSLVPATIW-NSVKFX 123
           + ++ G    I+ F++   +G ++   H Y+I IQ  T         +   IW + V F 
Sbjct: 67  RYVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSST--RFSNSPTISDEIWLDLVNFN 124

Query: 124 XXXXXXXXXXXXXXXXXXXSRVGEQRNFD-GGKKMKQI---VLNSFGVELTCSFWGHYVD 179
                                VGE +  D  GK  K+I   + ++    L CS WG + D
Sbjct: 125 DVLSGTLDQNKLVNVIGQLVNVGEIQLLDVQGKPTKKIDFQLRDTDDNRLPCSLWGKFAD 184

Query: 180 EIDRYLSTNDPTNVVVVIMCGKIKEFQGKRSIQNMLHCCKIMFNPTILVALEFKE----- 234
           +I +    +    V+ +I   K+  ++  RSI N     ++  NP +    EFK      
Sbjct: 185 QIHKVSKESVGGIVICLIRWAKLGHYKEIRSISNAFDASEVFINPILTEVEEFKNLLPSD 244

Query: 235 ----SMAQQNPSLQQGVGHIVDASQVSLKDDFLNLHERKTLSDLK 275
               ++ +  P  Q           + ++++     ERKT+++LK
Sbjct: 245 GLALTIMEPKPRFQ----------PLRVREERSKQFERKTIAELK 279


>AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr2:2098253-2100867 REVERSE LENGTH=532
          Length = 532

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 20  ILVRVIRFWTIRVGGQTTEI---DMILMDDKGSRIQATVNKHIATKYDKLIREGAVYAIQ 76
           + VR+ R W      +  +I   D++L+DDKG RIQA++   + +K+ + + EG  Y I 
Sbjct: 20  VKVRIARLWAYHKKDRPKDIMGIDLLLVDDKGERIQASIRSQLLSKFQEKLEEGDCYMIM 79

Query: 77  NFTLANNTGGFKVADHEYKITIQGET 102
           NF +++N G ++ + H YKI     T
Sbjct: 80  NFEISDNGGSYRASSHPYKINFMSMT 105


>AT1G14800.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:5099572-5102558 FORWARD LENGTH=384
          Length = 384

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 15  RDNWNILVRVIRFW---TIRVGGQTTEIDMILMDDKGSRIQATVNKHIATKYDKLIREGA 71
           R    ++ R++RFW    I+  GQ   I ++L+D+K S I A +   +A+ + +++REG 
Sbjct: 25  RSTQQVVGRLLRFWDARNIKKDGQFMGIVLLLLDEKCSVIHAFIPAALASHFRQVLREGI 84

Query: 72  VYAIQNFTLANNTGGFKVADHEY 94
           ++ +  F +   T  +K+ DH +
Sbjct: 85  IFNVSGFEVGRCTKLYKITDHPF 107


>AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A
           protein 1-related | chr5:24549682-24552641 REVERSE
           LENGTH=629
          Length = 629

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 8   IASLNPIRDNWNILVRVIRFWTIR----VGGQTTEIDMILMDDKGSRIQATVNKHIATKY 63
           + SLNP + NW I VRV     +R      G+    ++ L D++G++IQAT+    A K+
Sbjct: 184 LVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKF 243

Query: 64  DKLIREGAVYAIQNFTLANNTGGFKVADHEYKITI 98
               + G VY I   +L      FK   ++Y++T+
Sbjct: 244 FDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTL 278