Miyakogusa Predicted Gene
- Lj0g3v0305019.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0305019.1 Non Chatacterized Hit- tr|J3MNQ6|J3MNQ6_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB07G3,30.95,2e-18,DUF4228,Protein of unknown function DUF4228;
seg,NULL,CUFF.20522.1
(224 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G12340.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 163 9e-41
AT1G28190.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 66 2e-11
>AT5G12340.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G28190.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:3992948-3993610 REVERSE LENGTH=220
Length = 220
Score = 163 bits (412), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 131/225 (58%), Gaps = 16/225 (7%)
Query: 1 MGNAACFQCXXXXXXXXXXVKLIFWEG-TARSLKG--RHIAGEIMFEFPDMMVCHADSFF 57
MG + C V L+F+E + ++L G +H+AGEIMFEFPD +VCHADSF+
Sbjct: 1 MGRSLINSCFPIIRRRQGIVTLVFFEHVSTKTLCGFKKHVAGEIMFEFPDQIVCHADSFY 60
Query: 58 IGHPIPALSIDDQLMPGQTYFVIPXXXXXXXXXXXXXXXXXXXXXXXXXXNNINKSPIKF 117
IG IPAL++DD L+PGQTYFV+P N P+ F
Sbjct: 61 IGRQIPALAMDDYLIPGQTYFVLPIERFQYKILTTSCLSIFNSNLENVRSNT---PPLNF 117
Query: 118 GS----CPFQYLKGSDGRVLIKVMPEFITSLI--NKGISNNNGTLGSGSPSSLCSTPELQ 171
+ PF+Y +G +G++LIKV PEFI SLI N+ I T G S++C++PEL+
Sbjct: 118 TAPSSPPPFEYSQGPNGKILIKVSPEFIISLICKNRNIREEEAT-SCGENSAICNSPELK 176
Query: 172 KHYEQLVKSKNQVWSPKLETISEYKIRFSVSPCRYIGTLEWKEKE 216
K Y+QLV ++ +WSP L+TISE+KIR VSP R+ G L K+ E
Sbjct: 177 KQYDQLVGTREHMWSPNLQTISEHKIR--VSPLRFFG-LNRKQDE 218
>AT1G28190.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G12340.1); Has 166 Blast hits to 162 proteins
in 36 species: Archae - 0; Bacteria - 2; Metazoa - 15;
Fungi - 5; Plants - 124; Viruses - 0; Other Eukaryotes -
20 (source: NCBI BLink). | chr1:9847015-9847815 REVERSE
LENGTH=266
Length = 266
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 14/184 (7%)
Query: 20 VKLIFWEGTARSLKGRHIAGEIMFEFPDMMVCHADSFFIGHPIPALSIDDQLMPGQTYFV 79
+KL+ +G+ + + E+ +FP +C +D +IG P LS + L G YF+
Sbjct: 39 IKLVRSDGSLQVYDRPVVVSELTKDFPKHKICRSDLLYIGQKTPVLSETETLKLGLNYFL 98
Query: 80 IPXXXXXXXXXXXXXXXXXXXXXXXXXXNNINKSPIKFGSCPFQYLKGSDG-RVLIKVMP 138
+P + P PF KG G R+ I+V
Sbjct: 99 LPSDFFKNDLSFLTIATLKTPQNGGVLVKKTQQQP-----QPFLIQKGEKGERLRIRVSE 153
Query: 139 EFITSLINKGISNN------NGTLGSGSPSSLCSTPELQKHYEQLVKSKNQVWSPKLETI 192
EF++ L+ +G N G +C+T +L+K Y QLV + W PKLETI
Sbjct: 154 EFVSELMMEGKKNRVNEEEEEEEGGGEGEGRVCTTVKLKKDYVQLVGLRR--WKPKLETI 211
Query: 193 SEYK 196
+E K
Sbjct: 212 TETK 215