Miyakogusa Predicted Gene

Lj0g3v0305019.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0305019.1 Non Chatacterized Hit- tr|J3MNQ6|J3MNQ6_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB07G3,30.95,2e-18,DUF4228,Protein of unknown function DUF4228;
seg,NULL,CUFF.20522.1
         (224 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12340.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   163   9e-41
AT1G28190.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    66   2e-11

>AT5G12340.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:3992948-3993610 REVERSE LENGTH=220
          Length = 220

 Score =  163 bits (412), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 96/225 (42%), Positives = 131/225 (58%), Gaps = 16/225 (7%)

Query: 1   MGNAACFQCXXXXXXXXXXVKLIFWEG-TARSLKG--RHIAGEIMFEFPDMMVCHADSFF 57
           MG +    C          V L+F+E  + ++L G  +H+AGEIMFEFPD +VCHADSF+
Sbjct: 1   MGRSLINSCFPIIRRRQGIVTLVFFEHVSTKTLCGFKKHVAGEIMFEFPDQIVCHADSFY 60

Query: 58  IGHPIPALSIDDQLMPGQTYFVIPXXXXXXXXXXXXXXXXXXXXXXXXXXNNINKSPIKF 117
           IG  IPAL++DD L+PGQTYFV+P                          N     P+ F
Sbjct: 61  IGRQIPALAMDDYLIPGQTYFVLPIERFQYKILTTSCLSIFNSNLENVRSNT---PPLNF 117

Query: 118 GS----CPFQYLKGSDGRVLIKVMPEFITSLI--NKGISNNNGTLGSGSPSSLCSTPELQ 171
            +     PF+Y +G +G++LIKV PEFI SLI  N+ I     T   G  S++C++PEL+
Sbjct: 118 TAPSSPPPFEYSQGPNGKILIKVSPEFIISLICKNRNIREEEAT-SCGENSAICNSPELK 176

Query: 172 KHYEQLVKSKNQVWSPKLETISEYKIRFSVSPCRYIGTLEWKEKE 216
           K Y+QLV ++  +WSP L+TISE+KIR  VSP R+ G L  K+ E
Sbjct: 177 KQYDQLVGTREHMWSPNLQTISEHKIR--VSPLRFFG-LNRKQDE 218


>AT1G28190.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G12340.1); Has 166 Blast hits to 162 proteins
           in 36 species: Archae - 0; Bacteria - 2; Metazoa - 15;
           Fungi - 5; Plants - 124; Viruses - 0; Other Eukaryotes -
           20 (source: NCBI BLink). | chr1:9847015-9847815 REVERSE
           LENGTH=266
          Length = 266

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 14/184 (7%)

Query: 20  VKLIFWEGTARSLKGRHIAGEIMFEFPDMMVCHADSFFIGHPIPALSIDDQLMPGQTYFV 79
           +KL+  +G+ +      +  E+  +FP   +C +D  +IG   P LS  + L  G  YF+
Sbjct: 39  IKLVRSDGSLQVYDRPVVVSELTKDFPKHKICRSDLLYIGQKTPVLSETETLKLGLNYFL 98

Query: 80  IPXXXXXXXXXXXXXXXXXXXXXXXXXXNNINKSPIKFGSCPFQYLKGSDG-RVLIKVMP 138
           +P                              + P      PF   KG  G R+ I+V  
Sbjct: 99  LPSDFFKNDLSFLTIATLKTPQNGGVLVKKTQQQP-----QPFLIQKGEKGERLRIRVSE 153

Query: 139 EFITSLINKGISNN------NGTLGSGSPSSLCSTPELQKHYEQLVKSKNQVWSPKLETI 192
           EF++ L+ +G  N           G      +C+T +L+K Y QLV  +   W PKLETI
Sbjct: 154 EFVSELMMEGKKNRVNEEEEEEEGGGEGEGRVCTTVKLKKDYVQLVGLRR--WKPKLETI 211

Query: 193 SEYK 196
           +E K
Sbjct: 212 TETK 215