Miyakogusa Predicted Gene

Lj0g3v0304929.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304929.3 tr|F2D4L1|F2D4L1_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,65.28,9e-19,Got1,Vesicle
transport protein, Got1/SFT2-like; UNCHARACTERIZED,Vesicle transport
protein, SFT2-like,CUFF.20515.3
         (72 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24170.1 | Symbols:  | Got1/Sft2-like vescicle transport prot...   103   2e-23
AT5G23550.1 | Symbols:  | Got1/Sft2-like vescicle transport prot...    91   2e-19

>AT5G24170.1 | Symbols:  | Got1/Sft2-like vescicle transport protein
           family | chr5:8189744-8191355 REVERSE LENGTH=163
          Length = 163

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 60/72 (83%)

Query: 1   MLLSLIVFAKPIKFALLFTFGHLLAVGSTAFLLGPAQQLQMMLDPVRVFATAIFLGCVVV 60
           M LS+IVF  PIKFALLFTFG++LA+GSTAFL+GP QQ+ MM DPVR  AT+I++GCVVV
Sbjct: 52  MFLSMIVFGIPIKFALLFTFGNVLAIGSTAFLMGPEQQMSMMFDPVRFLATSIYIGCVVV 111

Query: 61  ALICALWVSPAL 72
           ALICAL +   +
Sbjct: 112 ALICALLIHSKI 123


>AT5G23550.1 | Symbols:  | Got1/Sft2-like vescicle transport protein
           family | chr5:7939914-7941479 REVERSE LENGTH=175
          Length = 175

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 57/71 (80%)

Query: 2   LLSLIVFAKPIKFALLFTFGHLLAVGSTAFLLGPAQQLQMMLDPVRVFATAIFLGCVVVA 61
           LLS++VF  P+KF + FT G+L+A+GSTAFL+GP +Q+ MMLDP R++ATA++L  +++A
Sbjct: 65  LLSMLVFFNPVKFGITFTLGNLMALGSTAFLIGPQRQVTMMLDPARIYATALYLASIIIA 124

Query: 62  LICALWVSPAL 72
           L CAL+V   L
Sbjct: 125 LFCALYVRNKL 135