Miyakogusa Predicted Gene

Lj0g3v0304929.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304929.1 Non Chatacterized Hit- tr|E3L555|E3L555_PUCGT
Putative uncharacterized protein OS=Puccinia graminis
,46.94,2e-17,Got1,Vesicle transport protein, Got1/SFT2-like;
UNCHARACTERIZED,Vesicle transport protein, SFT2-like,CUFF.20515.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24170.1 | Symbols:  | Got1/Sft2-like vescicle transport prot...   161   7e-41
AT5G23550.1 | Symbols:  | Got1/Sft2-like vescicle transport prot...   122   4e-29

>AT5G24170.1 | Symbols:  | Got1/Sft2-like vescicle transport protein
           family | chr5:8189744-8191355 REVERSE LENGTH=163
          Length = 163

 Score =  161 bits (408), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 88/112 (78%)

Query: 1   MLLSLIVFAKPIKFALLFTFGHLLAVGSTAFLLGPAQQLQMMLDPVRVFATAIFLGCVVV 60
           M LS+IVF  PIKFALLFTFG++LA+GSTAFL+GP QQ+ MM DPVR  AT+I++GCVVV
Sbjct: 52  MFLSMIVFGIPIKFALLFTFGNVLAIGSTAFLMGPEQQMSMMFDPVRFLATSIYIGCVVV 111

Query: 61  ALICALWIHSKXXXXXXXXXXXXXXXWYSLSYIPFARRMVSELMIRLCDTEL 112
           ALICAL IHSK               WYSLSYIPFARRMVSE+MIRLCDTEL
Sbjct: 112 ALICALLIHSKILTVLAILCEICALIWYSLSYIPFARRMVSEIMIRLCDTEL 163


>AT5G23550.1 | Symbols:  | Got1/Sft2-like vescicle transport protein
           family | chr5:7939914-7941479 REVERSE LENGTH=175
          Length = 175

 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 78/110 (70%)

Query: 2   LLSLIVFAKPIKFALLFTFGHLLAVGSTAFLLGPAQQLQMMLDPVRVFATAIFLGCVVVA 61
           LLS++VF  P+KF + FT G+L+A+GSTAFL+GP +Q+ MMLDP R++ATA++L  +++A
Sbjct: 65  LLSMLVFFNPVKFGITFTLGNLMALGSTAFLIGPQRQVTMMLDPARIYATALYLASIIIA 124

Query: 62  LICALWIHSKXXXXXXXXXXXXXXXWYSLSYIPFARRMVSELMIRLCDTE 111
           L CAL++ +K               WYSLSYIPFAR MVS++ +   DTE
Sbjct: 125 LFCALYVRNKLLTLLAIILEFTGLIWYSLSYIPFARTMVSKIFMTCFDTE 174