Miyakogusa Predicted Gene

Lj0g3v0304859.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304859.1 Non Chatacterized Hit- tr|I1N7F4|I1N7F4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.55851
PE,83.25,0,CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL,NULL; CYTOCHROME
C1,Cytochrome c1; Cytochrom_C1,Cytochrom,CUFF.20627.1
         (232 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40810.1 | Symbols:  | Cytochrome C1 family | chr5:16340200-1...   282   1e-76
AT3G27240.1 | Symbols:  | Cytochrome C1 family | chr3:10056144-1...   277   5e-75
AT5G40810.2 | Symbols:  | Cytochrome C1 family | chr5:16340670-1...   276   1e-74

>AT5G40810.1 | Symbols:  | Cytochrome C1 family |
           chr5:16340200-16342327 FORWARD LENGTH=307
          Length = 307

 Score =  282 bits (721), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/208 (72%), Positives = 160/208 (76%), Gaps = 6/208 (2%)

Query: 1   MAGGVMLQLLRRKLQPHSLNP------SMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT 54
           + GGV+ QLLRRKL   S+        S                              T 
Sbjct: 2   VGGGVIRQLLRRKLHSQSVATPVLSWLSSKKANEDAGSAGLRAFALMGAGITGLLSFSTV 61

Query: 55  ASADEAEHGLSCPSYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVA 114
           ASADEAEHGL CP+YPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVA
Sbjct: 62  ASADEAEHGLECPNYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVA 121

Query: 115 YTEEEVKAMAAEIEVVDGPNDEGEMFSRPGKLSDRFPEPYANESAARFANGGAYPPDLSL 174
           YTEEE KAMAAEIEVVDGPNDEGEMF+RPGKLSDR PEPY+NESAARFANGGAYPPDLSL
Sbjct: 122 YTEEEAKAMAAEIEVVDGPNDEGEMFTRPGKLSDRLPEPYSNESAARFANGGAYPPDLSL 181

Query: 175 ITKARHNGQNYVFSLLTGYREPPAGIVI 202
           +TKARHNGQNYVF+LLTGYR+PPAGI I
Sbjct: 182 VTKARHNGQNYVFALLTGYRDPPAGISI 209


>AT3G27240.1 | Symbols:  | Cytochrome C1 family |
           chr3:10056144-10058370 REVERSE LENGTH=307
          Length = 307

 Score =  277 bits (708), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 150/208 (72%), Positives = 158/208 (75%), Gaps = 6/208 (2%)

Query: 1   MAGGVMLQLLRRKLQPHSLNP------SMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT 54
           + GGV+ Q+LRRKL   SL        S                              T 
Sbjct: 2   VGGGVIQQILRRKLHSQSLATPVLSWFSSKKAHEDAGSSGVRALALLGAGVTGLLSFSTV 61

Query: 55  ASADEAEHGLSCPSYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVA 114
           ASADEAEHGL  P YPWPH+GILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVA
Sbjct: 62  ASADEAEHGLESPEYPWPHDGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVA 121

Query: 115 YTEEEVKAMAAEIEVVDGPNDEGEMFSRPGKLSDRFPEPYANESAARFANGGAYPPDLSL 174
           YTEEE KAMAAEIEVVDGPNDEGEMF+RPGKLSDRFP+PYANESAARFANGGAYPPDLSL
Sbjct: 122 YTEEEAKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLSL 181

Query: 175 ITKARHNGQNYVFSLLTGYREPPAGIVI 202
           ITKARHNG NYVF+LLTGYR+PPAGI I
Sbjct: 182 ITKARHNGPNYVFALLTGYRDPPAGISI 209


>AT5G40810.2 | Symbols:  | Cytochrome C1 family |
           chr5:16340670-16342327 FORWARD LENGTH=260
          Length = 260

 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/150 (92%), Positives = 145/150 (96%)

Query: 53  TTASADEAEHGLSCPSYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVG 112
           T ASADEAEHGL CP+YPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVG
Sbjct: 13  TVASADEAEHGLECPNYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVG 72

Query: 113 VAYTEEEVKAMAAEIEVVDGPNDEGEMFSRPGKLSDRFPEPYANESAARFANGGAYPPDL 172
           VAYTEEE KAMAAEIEVVDGPNDEGEMF+RPGKLSDR PEPY+NESAARFANGGAYPPDL
Sbjct: 73  VAYTEEEAKAMAAEIEVVDGPNDEGEMFTRPGKLSDRLPEPYSNESAARFANGGAYPPDL 132

Query: 173 SLITKARHNGQNYVFSLLTGYREPPAGIVI 202
           SL+TKARHNGQNYVF+LLTGYR+PPAGI I
Sbjct: 133 SLVTKARHNGQNYVFALLTGYRDPPAGISI 162