Miyakogusa Predicted Gene

Lj0g3v0304719.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304719.1 Non Chatacterized Hit- tr|C6T8K1|C6T8K1_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,86.27,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; GLYCOSYL
TRANSFERASE-RELATED,Oligosaccharide biosynthesis protei,CUFF.20499.1
         (233 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18230.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   289   9e-79

>AT4G18230.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Oligosaccharide biosynthesis protein Alg14
           like (InterPro:IPR013969); Has 640 Blast hits to 640
           proteins in 277 species: Archae - 4; Bacteria - 281;
           Metazoa - 94; Fungi - 127; Plants - 57; Viruses - 0;
           Other Eukaryotes - 77 (source: NCBI BLink). |
           chr4:10080521-10081710 REVERSE LENGTH=233
          Length = 233

 Score =  289 bits (740), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 138/205 (67%), Positives = 166/205 (80%), Gaps = 1/205 (0%)

Query: 29  VVRVLYVLYCSSRPLSKRALKPVSTLIILGSGGHTAEMLNLLAVLQKDRFNPRFYIAAAT 88
           +VRVLYV+Y   +PL K A +  +TLI+LGSGGHTAEML+LL+VL+KDRF PRFYIAAAT
Sbjct: 30  MVRVLYVIYRCGKPLPKGASQSFTTLIVLGSGGHTAEMLSLLSVLRKDRFTPRFYIAAAT 89

Query: 89  DNMSLQKAQLLENSLEAENGSSVTGAAQFMKIYRSREVGQSYITSVWTTLIAMVHALWLM 148
           DNMSLQKA+  E+SL AE  +    ++QFM+IYRSREVGQSY+TSVWTT++A++HALWLM
Sbjct: 90  DNMSLQKARSFEDSL-AEKPAVKEASSQFMQIYRSREVGQSYVTSVWTTIVAILHALWLM 148

Query: 149 IKIRPEVILCNGPGTCIPLCAIAFIFKVMGIRWSSIFYVESIAXXXXXXXXXXXXXXXXM 208
           I+IRP+VILCNGPGTCIPLC IAF+FKV+GIRWSSIFYVES+A                +
Sbjct: 149 IRIRPQVILCNGPGTCIPLCVIAFLFKVLGIRWSSIFYVESVARVKKLSLSGLLLYKLRI 208

Query: 209 ADQLFVQWPQLQRQYPRATYVGRLM 233
           ADQ FVQWPQL ++YPRA YVG LM
Sbjct: 209 ADQFFVQWPQLHKKYPRAHYVGCLM 233