Miyakogusa Predicted Gene

Lj0g3v0304469.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304469.1 Non Chatacterized Hit- tr|K4BVT3|K4BVT3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,41.3,3e-18,DUF295,Protein of unknown function
DUF295,CUFF.20485.1
         (127 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17030.1 | Symbols:  | F-box family protein with a domain of ...    55   9e-09
AT3G25750.1 | Symbols:  | F-box family protein with a domain of ...    53   4e-08
AT2G26160.1 | Symbols:  | F-box family protein with a domain of ...    51   2e-07
AT1G44080.1 | Symbols:  | F-box family protein with a domain of ...    50   3e-07
AT2G17690.1 | Symbols: SDC | F-box family protein with a domain ...    46   6e-06

>AT2G17030.1 | Symbols:  | F-box family protein with a domain of
           unknown function (DUF295) | chr2:7399108-7400650 FORWARD
           LENGTH=407
          Length = 407

 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 53/101 (52%)

Query: 27  RTVRFEVFKMDWKESKWDKIETLGDKVLFVGGNNSHSFSASDFGGCFEADCIYFTGHYPE 86
           RTV+F+V++   +E  W  +  L DK+LF+G +++ S SASD     +   ++F G+   
Sbjct: 289 RTVKFKVYRFVEREESWVDVYDLEDKMLFLGDDSTFSASASDILPLCDGSSVFFNGNVFN 348

Query: 87  SNHDDSCGKHDLGIFRLKDKSIEPLPCFPQNSPIWITPNPF 127
                +    DLG+F  +   IE +   P+ + ++  P P+
Sbjct: 349 GEDLGAMQDRDLGVFDFRSGKIELVQKLPEYAKLFWPPPPW 389


>AT3G25750.1 | Symbols:  | F-box family protein with a domain of
           unknown function (DUF295) | chr3:9400955-9402088 FORWARD
           LENGTH=348
          Length = 348

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 22  ENQVCRTVRFEVFKMDWKESKWDKIETLGDKVLFVGGNNSHSFSASDFGGCFEADCIYFT 81
            N + RTV F+V+KMD   +KW ++  LGD  L V  N+  +  AS++ GC + + IYF+
Sbjct: 248 RNHIQRTVGFKVYKMDEDLAKWVEVSCLGDNTLIVACNSCFTVVASEYHGCLK-NSIYFS 306

Query: 82  GHYPESNHDDSCGKHDLGIFRLKDKSI 108
            +       D     ++ +F+L D SI
Sbjct: 307 YY-------DVKKAENIKVFKLDDGSI 326


>AT2G26160.1 | Symbols:  | F-box family protein with a domain of
           unknown function (DUF295) | chr2:11138456-11139451
           REVERSE LENGTH=331
          Length = 331

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 6   DLLVVTRALNKDAGGEENQVCRTVRFEVFKMDWKESKWDKIETLGDKVLFVGGNNSHSFS 65
           DL ++ +   K A    +Q  RTV F+V+KMD   +KW ++ +LGDK L V  ++  +  
Sbjct: 247 DLCIIHQLRLKKAYIRRSQ--RTVGFKVYKMDEYVAKWVEVRSLGDKALIVARDSCFTVV 304

Query: 66  ASDFGGCFEADCIYFTGHYPES 87
           AS++ GC   + IYF  +  +S
Sbjct: 305 ASEYHGCLN-NSIYFVDNVRKS 325


>AT1G44080.1 | Symbols:  | F-box family protein with a domain of
           unknown function (DUF295) | chr1:16753944-16755670
           REVERSE LENGTH=347
          Length = 347

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 13/82 (15%)

Query: 27  RTVRFEVFKMDWKESKWDKIETLGDKVLFVGGNNSHSFSASDFGGCFEADCIYFTGHYPE 86
           RTV F+V+KMD    +W ++ +LGDK L V  +N     AS++ GC E + IYF      
Sbjct: 254 RTVCFKVYKMDKNLVEWVEVSSLGDKALIVATDNCFLVLASEYYGCLE-NAIYFN----- 307

Query: 87  SNHDDSCGKHDLGIFRLKDKSI 108
                   + D+ +F+L D SI
Sbjct: 308 -------DREDVSVFKLDDCSI 322


>AT2G17690.1 | Symbols: SDC | F-box family protein with a domain of
           unknown function (DUF295) | chr2:7682818-7684083 FORWARD
           LENGTH=421
          Length = 421

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 16/98 (16%)

Query: 27  RTVRFEVFKMDWKESKWDKIETLGDKVLFVGGNNSHSFSASDFGGCFEADCIYFTGHYPE 86
           +T+ F+V+K D +  KW ++++LGDK + +  +   S SA +F GC   + IYFT    E
Sbjct: 332 KTIGFKVYKNDEELLKWVEVKSLGDKAIVIATDACFSVSAHEFYGCL-PNSIYFTDKKEE 390

Query: 87  SNHDDSCGKHDLGIFRLKDKSIEPL-----PCFPQNSP 119
                     ++ +F+L D SI  +      CF    P
Sbjct: 391 ----------EVKVFKLDDGSITTMSESEQSCFQMFVP 418