Miyakogusa Predicted Gene

Lj0g3v0304429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304429.1 Non Chatacterized Hit- tr|I3SB43|I3SB43_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,97.77,0,coiled-coil,NULL; Snf7,Snf7; seg,NULL; CHARGED
MULTIVESICULAR BODY PROTEIN 2A (CHROMATIN-MODIFYING P,CUFF.20481.1
         (224 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein | chr2:25887...   308   2e-84
AT1G03950.1 | Symbols: VPS2.3 | vacuolar protein sorting-associa...   126   1e-29
AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein | chr5:17946...   112   2e-25
AT5G44560.2 | Symbols: VPS2.2 | SNF7 family protein | chr5:17946...   100   1e-21
AT5G22950.1 | Symbols: VPS24.1 | SNF7 family protein | chr5:7681...    58   6e-09
AT1G17730.1 | Symbols: VPS46.1, CHMP1B | vacuolar protein sortin...    53   2e-07

>AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein |
           chr2:2588740-2590285 REVERSE LENGTH=225
          Length = 225

 Score =  308 bits (789), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/225 (73%), Positives = 177/225 (78%), Gaps = 2/225 (0%)

Query: 1   MSFLFGSRKTPAELLRENKRMLDKSIREIKRERQGLQNQEKKLIVEIKKNAKQGQMGAVR 60
           M+ +FG RKTPAELLRENKRMLDKSIREI+RERQGLQ QEKKLI EIKK AKQGQMGAV+
Sbjct: 2   MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVK 61

Query: 61  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRRLNLP 120
           VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNR++NLP
Sbjct: 62  VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 121

Query: 121 SLPKIMQEFERQNEKMELVSEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGIDINSELL 180
           SL KIMQEFERQNEKME+VSEVM                    V+QVLDEIGIDIN EL+
Sbjct: 122 SLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELV 181

Query: 181 HXXXXXXXXXXXXXXXXXQAEPTGNDDS-GIDDDLQARLDNLRKM 224
           +                 QAE TG +DS GID DLQARLDNLRKM
Sbjct: 182 N-APSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225


>AT1G03950.1 | Symbols: VPS2.3 | vacuolar protein sorting-associated
           protein 2.3 | chr1:1011388-1013212 REVERSE LENGTH=210
          Length = 210

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 123/219 (56%), Gaps = 11/219 (5%)

Query: 4   LFGSRKTPAELLRENKRMLDKSIREIKRERQGLQNQEKKLIVEIKKNAKQGQMGAVRVMA 63
           +F  +  P E+LRE+KR + ++ R I++E   LQ++EKKL++EIK+ AK G  GA +++A
Sbjct: 3   IFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILA 62

Query: 64  KDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRRLNLPSLP 123
           + LIR R QI      ++Q++G++   Q + +  ++   M+G TKAM  M++ ++     
Sbjct: 63  RQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQA 122

Query: 124 KIMQEFERQNEKMELVSEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGIDINSELLHXX 183
           K+M+EF++Q+ +M++ +E+M                     NQVLDEIGIDI S+L    
Sbjct: 123 KVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQL---- 178

Query: 184 XXXXXXXXXXXXXXXQAEPTGNDDSGIDDDLQARLDNLR 222
                          +AE  G+  SGI D+L+ RL  LR
Sbjct: 179 ----SSAPKGKIGGKKAEDVGS--SGI-DELEKRLAALR 210


>AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein |
           chr5:17946081-17948222 FORWARD LENGTH=222
          Length = 222

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 101/176 (57%)

Query: 4   LFGSRKTPAELLRENKRMLDKSIREIKRERQGLQNQEKKLIVEIKKNAKQGQMGAVRVMA 63
           +F  + TP + LR +KR +  + R I+RE   LQ +EK+L+ EIKK AK G   A +++A
Sbjct: 3   IFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILA 62

Query: 64  KDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRRLNLPSLP 123
           + L+R R QI      ++Q++GV+   Q L ++ ++   MKG TKAM  MN+++      
Sbjct: 63  RQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQA 122

Query: 124 KIMQEFERQNEKMELVSEVMXXXXXXXXXXXXXXXXXXXXVNQVLDEIGIDINSEL 179
           K++++F++Q+ ++++  E+M                     NQVLDEIG+ + S+L
Sbjct: 123 KVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQL 178


>AT5G44560.2 | Symbols: VPS2.2 | SNF7 family protein |
           chr5:17946516-17948222 FORWARD LENGTH=202
          Length = 202

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 89/155 (57%)

Query: 25  SIREIKRERQGLQNQEKKLIVEIKKNAKQGQMGAVRVMAKDLIRTRHQIEKFYKLKSQLQ 84
           + R I+RE   LQ +EK+L+ EIKK AK G   A +++A+ L+R R QI      ++Q++
Sbjct: 4   ATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIR 63

Query: 85  GVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRRLNLPSLPKIMQEFERQNEKMELVSEVMX 144
           GV+   Q L ++ ++   MKG TKAM  MN+++      K++++F++Q+ ++++  E+M 
Sbjct: 64  GVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMS 123

Query: 145 XXXXXXXXXXXXXXXXXXXVNQVLDEIGIDINSEL 179
                               NQVLDEIG+ + S+L
Sbjct: 124 EAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQL 158


>AT5G22950.1 | Symbols: VPS24.1 | SNF7 family protein |
           chr5:7681380-7682720 FORWARD LENGTH=229
          Length = 229

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 78/141 (55%), Gaps = 2/141 (1%)

Query: 4   LFGSRKTPAELLRENKRMLDKSIREIKRERQGLQNQEKKLIVEIKKNAKQGQMGAVRVMA 63
           +   +  P +LLR+ +R L +  R I+R+ + +Q +E+ +   IK+ AK+  M + + +A
Sbjct: 7   IIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALA 66

Query: 64  KDLIRTRHQIEKFYKLKSQLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRRLNLPSL 122
           K+++ +R  + + Y+ K+Q+  +S+ + +++   + +G   K   + M  +N  +  P +
Sbjct: 67  KEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKS-AEVMKLVNNLMKAPQM 125

Query: 123 PKIMQEFERQNEKMELVSEVM 143
              MQEF ++  K  ++ E +
Sbjct: 126 AATMQEFSKEMTKAGVIEEFV 146


>AT1G17730.1 | Symbols: VPS46.1, CHMP1B | vacuolar protein sorting
           46.1 | chr1:6099210-6100153 FORWARD LENGTH=203
          Length = 203

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 14/196 (7%)

Query: 27  REIKRERQGLQNQEKKLIVEIKKNAKQGQMGAVRVMAKDLIRTRHQIEKFYKLKSQLQGV 86
           + ++R+ +  + +E+   +++KK  ++G M   R+ A++ IR R +   + +L S+L  V
Sbjct: 19  KSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIRKRSEQMNYLRLSSRLDAV 78

Query: 87  SLRIQTLKSTQAMGEAMKGVTKAMGQMNRRLNLPSLPKIMQEFERQNEKMELVSEVMXXX 146
             R+ T      + ++M  + K++       NL  + + M  FE+Q   ME+ +E M   
Sbjct: 79  VARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDSFEKQFVNMEVQAEFMDNA 138

Query: 147 XXXXXXXXXXXXXXXXXVNQVLDEIGIDINSELLHXXXXXXXXXXXXXXXXXQAEPTGND 206
                            + QV D+ G++++  L                    A PT  +
Sbjct: 139 MAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ--------------PAGHAIPTKTE 184

Query: 207 DSGIDDDLQARLDNLR 222
           +   +DDL  RL  L+
Sbjct: 185 EKVEEDDLTRRLAELK 200