Miyakogusa Predicted Gene

Lj0g3v0304359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304359.1 Non Chatacterized Hit- tr|F6HZN0|F6HZN0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,31.05,3e-19,Mitochondrial termination factor repeats,Mitochodrial
transcription termination factor-related; mTER,CUFF.20476.1
         (203 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07900.1 | Symbols:  | Mitochondrial transcription terminatio...    91   4e-19
AT1G21150.1 | Symbols:  | Mitochondrial transcription terminatio...    87   8e-18
AT1G62120.1 | Symbols:  | Mitochondrial transcription terminatio...    76   2e-14
AT1G61970.2 | Symbols:  | Mitochondrial transcription terminatio...    75   2e-14
AT1G61970.1 | Symbols:  | Mitochondrial transcription terminatio...    75   2e-14
AT1G62085.1 | Symbols:  | Mitochondrial transcription terminatio...    74   8e-14
AT1G61960.1 | Symbols:  | Mitochondrial transcription terminatio...    69   2e-12
AT3G46950.1 | Symbols:  | Mitochondrial transcription terminatio...    69   3e-12
AT1G61980.1 | Symbols:  | Mitochondrial transcription terminatio...    67   1e-11
AT1G62110.1 | Symbols:  | Mitochondrial transcription terminatio...    62   4e-10
AT1G61990.1 | Symbols:  | Mitochondrial transcription terminatio...    58   5e-09
AT1G62150.1 | Symbols:  | Mitochondrial transcription terminatio...    57   1e-08
AT5G23930.1 | Symbols:  | Mitochondrial transcription terminatio...    55   2e-08
AT1G56380.2 | Symbols:  | Mitochondrial transcription terminatio...    55   3e-08
AT1G56380.1 | Symbols:  | Mitochondrial transcription terminatio...    55   3e-08

>AT5G07900.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr5:2520188-2521405 FORWARD
           LENGTH=405
          Length = 405

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 86/146 (58%), Gaps = 7/146 (4%)

Query: 34  FHSPLSLFSTTSHSSDKQ----SFPLSYFTNTCGFSSQAALKAAKRVRFDTAEKPDSVIA 89
           F SP++  ++ +   D+Q    SF L+Y  ++CG S  +A  A++++  D+ E+P++V+ 
Sbjct: 47  FSSPVTTLTSKNPKDDEQQQKLSFTLNYLIDSCGLSPDSATVASRKLLLDSPERPNTVLN 106

Query: 90  FFTNHGFSISQTHSIIRRVPEVLLFDPTIRVLPKFQFLASKGFD---IVTTVSRTPYFLL 146
              +HGF+ +Q  S++++ P +LL +    +LPK  F  S G     +  T++  P  L 
Sbjct: 107 LLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSLLARTLASDPTILT 166

Query: 147 KSLENHIIPAFEFVRTFSPSDQKAIA 172
           +SL N +IP++ F+++   SD+K +A
Sbjct: 167 RSLVNQLIPSYNFLKSVLDSDEKIVA 192


>AT1G21150.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:7406406-7407578 REVERSE
           LENGTH=390
          Length = 390

 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 83/155 (53%), Gaps = 6/155 (3%)

Query: 51  QSFPLSYFTNTCGFSSQAALKAAKRVRFDTAEKPDSVIAFFTNHGFSISQTHSIIRRVPE 110
           +SF +SY  ++CG S ++A   ++ V+  +++KPDSV+A F +HGF+  Q  S+I+  P 
Sbjct: 55  ESFTVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPR 114

Query: 111 VLLFDPTIRVLPKFQFLASKGF---DIVTTVSRTPYFLLKSLENHIIPAFEFVRTFSPSD 167
           VL   P   + PK  F +S GF   D    +S +P  L  SL   +IP ++ +++    +
Sbjct: 115 VLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSILVEE 174

Query: 168 QKAIACALFGSHSITIAL---MKSKVKLLLHMGVP 199
           +  + C   G    ++ +   +  +V +   +GVP
Sbjct: 175 ESVVKCLKRGIRCFSLKITHCVSLRVSICRELGVP 209


>AT1G62120.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:22960326-22961639 REVERSE
           LENGTH=437
          Length = 437

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 9/155 (5%)

Query: 52  SFPLSYFTNTCGFSSQAALKAAKRVRFDTAEKPDSVIAFFTNHGFSISQTHSIIRRVPEV 111
           +F +SY  ++ G +++ A   + +V FD    PDSV++   +HGF+ SQ  +IIR  P +
Sbjct: 56  NFTVSYLVDSLGLATKVAESISMKVSFDNKGNPDSVLSLLRSHGFTDSQISNIIRTFPRL 115

Query: 112 LLFDPTIRVLPKFQFLASKGF---DIVTTVSRTPYFLLKSLENHIIPAFEFVRTFSPSDQ 168
           L+ D    + PK QFL S G    ++  TVS  P  L K     +   ++FV+    +D+
Sbjct: 116 LILDAEKSLAPKLQFLQSIGASSSELTETVSAVPKILGKRKGKSLSRYYDFVKVIIEADK 175

Query: 169 KAIACALFGSHSI-TIALMKSKVKLLL---HMGVP 199
            +    L   HS+   +  ++K++ LL    MGVP
Sbjct: 176 SSKLEKL--CHSLPEGSKQENKIRNLLVLREMGVP 208


>AT1G61970.2 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:22904713-22905969 FORWARD
           LENGTH=418
          Length = 418

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 13/157 (8%)

Query: 51  QSFPLSYFTNTCGFSSQAALKAAKRVRFDTAEKPDSVIAFFTNHGFSISQTHSIIRRVPE 110
            +F +SY  ++ G +++ A   +++V F+    PDSV+   T+HGF+ SQ  +IIR  P+
Sbjct: 51  NNFTVSYLVDSLGLTTKLAESISRKVSFEDKNNPDSVLNLLTSHGFTGSQISTIIRDYPQ 110

Query: 111 VLLFDPTIRVLPKFQFLASKGF---DIVTTVSRTPYFLLKSLENHIIPAFEFVRT--FSP 165
           +L+ D    + PK QFL S+G    +I   VS  P  L K     I   ++F++      
Sbjct: 111 LLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIKDTLLEK 170

Query: 166 SDQKAIACALFGSHSITIALMKSKVK---LLLHMGVP 199
           S +    C     HS+    +++K++   +L  +G+P
Sbjct: 171 SSKNEKLC-----HSLPQGNLENKIRNVSVLRELGMP 202


>AT1G61970.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:22904713-22905969 FORWARD
           LENGTH=418
          Length = 418

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 13/157 (8%)

Query: 51  QSFPLSYFTNTCGFSSQAALKAAKRVRFDTAEKPDSVIAFFTNHGFSISQTHSIIRRVPE 110
            +F +SY  ++ G +++ A   +++V F+    PDSV+   T+HGF+ SQ  +IIR  P+
Sbjct: 51  NNFTVSYLVDSLGLTTKLAESISRKVSFEDKNNPDSVLNLLTSHGFTGSQISTIIRDYPQ 110

Query: 111 VLLFDPTIRVLPKFQFLASKGF---DIVTTVSRTPYFLLKSLENHIIPAFEFVRT--FSP 165
           +L+ D    + PK QFL S+G    +I   VS  P  L K     I   ++F++      
Sbjct: 111 LLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIKDTLLEK 170

Query: 166 SDQKAIACALFGSHSITIALMKSKVK---LLLHMGVP 199
           S +    C     HS+    +++K++   +L  +G+P
Sbjct: 171 SSKNEKLC-----HSLPQGNLENKIRNVSVLRELGMP 202


>AT1G62085.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:22948757-22950142 REVERSE
           LENGTH=461
          Length = 461

 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 14/159 (8%)

Query: 24  KCHHL---LQLKPFHSPLSLFSTTSHSSDKQ--------SFPLSYFTNTCGFSSQAALKA 72
           KC HL   + L    SP S   + ++++D          SF +SY  ++ G   + A   
Sbjct: 16  KCRHLSVPVNLLEKASPFSNSFSYANATDASLRAGRKGLSFSVSYLVDSLGLPKKVAESI 75

Query: 73  AKRVRFDTAEKPDSVIAFFTNHGFSISQTHSIIRRVPEVLLFDPTIRVLPKFQFLASKGF 132
           +K+V F+    PDSV++   +HGF+ SQ  SII   P++L+ D    + PK QFL S+G 
Sbjct: 76  SKKVSFEDKGNPDSVLSLLRSHGFTDSQISSIITDYPQLLVADAEKSIGPKLQFLQSRGA 135

Query: 133 ---DIVTTVSRTPYFLLKSLENHIIPAFEFVRTFSPSDQ 168
              ++   VS  P  L K  +  I   ++FV+    +D+
Sbjct: 136 SRSELTHIVSTVPEILGKRGDKTISIYYDFVKEIIEADK 174


>AT1G61960.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:22902239-22903612 FORWARD
           LENGTH=457
          Length = 457

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 8/154 (5%)

Query: 51  QSFPLSYFTNTCGFSSQAALKAAKRVRFDTAEKPDSVIAFFTNHGFSISQTHSIIRRVPE 110
            +F +SY  ++ G +++ A   +K+V F+    PDSV++  T++GF+ SQ  SII   P 
Sbjct: 51  NNFTVSYLVDSLGLTTKLAESISKKVSFEERRNPDSVLSLLTSYGFTKSQISSIITIYPR 110

Query: 111 VLLFDPTIRVLPKFQFLASKGF---DIVTTVSRTPYFLLKSLENHIIPAFEFVRTFSPSD 167
           +L  D    + PK Q L S+G    ++   VS  P  L K     I   ++FV+    +D
Sbjct: 111 LLALDAEKSIAPKLQSLQSRGASSSELTQIVSTVPKILGKRGHKSITVYYDFVKDIIEAD 170

Query: 168 QKAIACALFGSHSITIALMKSKVK---LLLHMGV 198
           + +    L   HS      K+K++   +L  +GV
Sbjct: 171 KSSSYEKL--CHSFPQGNKKNKIRNISVLRELGV 202


>AT3G46950.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr3:17289452-17290804 FORWARD
           LENGTH=450
          Length = 450

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 10/165 (6%)

Query: 41  FSTT--SHSSDKQS-FPLSYFTNTCGFSSQAALKAAKRVRFDTAEKPDSVIAFFTNHGFS 97
           FS+T    SS K S F +SY   + G + + A   +K+V F+    PDSV+    ++GF 
Sbjct: 38  FSSTIAKDSSPKGSTFTVSYLVESLGLTKKLAETISKKVTFEDKVNPDSVLNLLRSNGFK 97

Query: 98  ISQTHSIIRRVPEVLLFDPTIRVLPKFQFLASKGF---DIVTTVSRTPYFLLKSLENHII 154
            SQ   IIR  P +L+ D    + PK QFL S+G    +++  VS  P  L K  E  + 
Sbjct: 98  DSQISRIIRAYPRLLVTDAEKSLRPKLQFLKSRGASSSEVIEIVSNVPTILDKKGEESVS 157

Query: 155 PAFEFVRTFSPSDQKAIACALFGSHSITIALMKSKVKLLLHMGVP 199
             ++FV+      +        G     I      + +L  +GVP
Sbjct: 158 LYYDFVKDIMQDGKSLCISCPEGKKGNRI----RNISVLRELGVP 198


>AT1G61980.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:22908162-22909418 FORWARD
           LENGTH=418
          Length = 418

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 7/154 (4%)

Query: 51  QSFPLSYFTNTCGFSSQAALKAAKRVRFDTAEKPDSVIAFFTNHGFSISQTHSIIRRVPE 110
           +SF +SY  ++ G   + A   +++V F+  + PDSV+    +HGF+ SQ  +I+   P+
Sbjct: 51  KSFTVSYLVDSLGLPKKLAESVSRKVSFEDKDNPDSVLNLLRSHGFTDSQISTIVTDYPQ 110

Query: 111 VLLFDPTIRVLPKFQFLASKGF---DIVTTVSRTPYFLLKSLENHIIPAFEFVRT--FSP 165
           +L+ D    + PK QFL S+G    ++   VS  P  L K     I   ++F++      
Sbjct: 111 LLVADAEKSLAPKLQFLQSRGASSSELTEIVSTVPKILGKRGHKTISVFYDFIKETLLDK 170

Query: 166 SDQKAIACALFGSHSITIALMKSKVKLLLHMGVP 199
           S +   +C  F   ++   +    + +L  +G+P
Sbjct: 171 SSKSEKSCQPFPQGNLENKI--RNLSVLRELGMP 202


>AT1G62110.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:22958094-22959482 REVERSE
           LENGTH=462
          Length = 462

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 51  QSFPLSYFTNTCGFSSQAALKAAKRVRFDTAEKPDSVIAFFTNHGFSISQTHSIIRRVPE 110
           ++F +SY  ++ G +++ A   +K+V F     PD V++ F ++GF+ SQ  SII   P 
Sbjct: 51  KNFTVSYLVDSLGLATKLAESISKKVSFVNKGNPDLVLSLFRSYGFTNSQISSIITDYPR 110

Query: 111 VLLFDPTIRVLPKFQFLASKGF---DIVTTVSRTPYFLLKSLENHIIPAFEFVRTFSPSD 167
           +LL D    +  K QFL S+G    ++   VS  P  L       +   ++FV+    +D
Sbjct: 111 LLLIDAEKSLDIKLQFLESRGASSPELTQIVSTVPKILGMKEGKSLGRYYDFVKEIIEAD 170

Query: 168 Q 168
           +
Sbjct: 171 K 171


>AT1G61990.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:22911453-22912697 FORWARD
           LENGTH=414
          Length = 414

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 3/100 (3%)

Query: 51  QSFPLSYFTNTCGFSSQAALKAAKRVRFDTAEKPDSVIAFFTNHGFSISQTHSIIRRVPE 110
           ++F +SY  ++ G S + A   +++V F+    PDSV++ F ++GF+ SQ  +II   P 
Sbjct: 51  KNFTVSYLVDSLGLSKKLAESISRKVSFEDKVNPDSVLSLFRSYGFTDSQISTIITDYPL 110

Query: 111 VLLFDPTIRVLPKFQFLASKGF---DIVTTVSRTPYFLLK 147
           +L+ D    +  K Q L S+G    +I   VS  P  L K
Sbjct: 111 LLVADAKKALGRKLQILQSRGASSSEITEIVSTVPRILGK 150


>AT1G62150.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:22970198-22971589 REVERSE
           LENGTH=463
          Length = 463

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 3/126 (2%)

Query: 46  HSSDKQSFPLSYFTNTCGFSSQAALKAAKRVRFDTAEKPDSVIAFFTNHGFSISQTHSII 105
            S    +F +SY  ++ G +S+ A   + +V F+    PD+V+    +H F+ SQ  SII
Sbjct: 52  DSRKGNNFTVSYLVDSLGLASKLAESISMKVSFENKGNPDTVLNLLRSHEFTDSQISSII 111

Query: 106 RRVPEVLLFDPTIRVLPKFQFLASKGF---DIVTTVSRTPYFLLKSLENHIIPAFEFVRT 162
              P +L+ D    + PK   + S+G    ++   VS+ P  L    +  I   ++ V+ 
Sbjct: 112 SDYPTLLVADAENSLGPKLLLMQSRGASSSELTEIVSKVPKILGMKGDKSIGRYYDIVKE 171

Query: 163 FSPSDQ 168
              +D+
Sbjct: 172 IIEADK 177


>AT5G23930.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr5:8074625-8075998 REVERSE
           LENGTH=457
          Length = 457

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 50  KQSFPLSYFTNTCGFSSQAALKAAKRVRFDTAEKPDSVIAFFTNHGFSISQTHSIIRRVP 109
           +++F +SY  ++ G +++ A   + +  FD    PDSV+    ++GF  SQ  SII   P
Sbjct: 53  RKTFTVSYLIDSLGLTTKLAESISMKANFDEKGNPDSVLKLLRSYGFKDSQISSIISTYP 112

Query: 110 EVLLFDPTIRVLPKFQFLASKGF---DIVTTVSRTPYFLLKSLENHIIPAFEFVR 161
             L+ +P   +  K  FL   G    ++   VS+ P  L K     I   +++V+
Sbjct: 113 RFLIENPEKTLRAKLHFLKLNGASSSELTEIVSKVPKILGKRGGKWISHYYDYVK 167


>AT1G56380.2 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:21101327-21102701 FORWARD
           LENGTH=399
          Length = 399

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 22/164 (13%)

Query: 49  DKQSFP---LSYFTNTCGFSSQAALKAAKRVRFDTAEKPDSVIAFFTNHGFSISQTHSII 105
           D Q  P   +SY  ++ G   + A    K V       P+SV+    ++ F+ SQ  SII
Sbjct: 21  DAQKEPKLTVSYLVDSVGIPIKFAESILKEVSSKDKCNPNSVLNLLRSYDFTDSQISSII 80

Query: 106 RRVPEVLLFDPTIRVLPKFQFLASKGF------DIVTTVSRTPYFLLKSLENHIIPAFEF 159
              PE+L+ D    + PK +FL S+        DIVT   R P  L    E  +I  ++F
Sbjct: 81  TTDPELLMEDAENSLCPKLKFLESREILSSRLNDIVT---RVPKILRMEEEKSMITYYDF 137

Query: 160 VRTFSPSDQKAI---ACALFGSHSITIALMKSKVKLLLHMGVPP 200
           V+T + +  ++     C L+         ++S ++ ++ MG  P
Sbjct: 138 VKTITLTSSRSDFYKVCELY-------PYIESSIRKVIEMGFDP 174


>AT1G56380.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:21101374-21102701 FORWARD
           LENGTH=388
          Length = 388

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 22/164 (13%)

Query: 49  DKQSFP---LSYFTNTCGFSSQAALKAAKRVRFDTAEKPDSVIAFFTNHGFSISQTHSII 105
           D Q  P   +SY  ++ G   + A    K V       P+SV+    ++ F+ SQ  SII
Sbjct: 10  DAQKEPKLTVSYLVDSVGIPIKFAESILKEVSSKDKCNPNSVLNLLRSYDFTDSQISSII 69

Query: 106 RRVPEVLLFDPTIRVLPKFQFLASKGF------DIVTTVSRTPYFLLKSLENHIIPAFEF 159
              PE+L+ D    + PK +FL S+        DIVT   R P  L    E  +I  ++F
Sbjct: 70  TTDPELLMEDAENSLCPKLKFLESREILSSRLNDIVT---RVPKILRMEEEKSMITYYDF 126

Query: 160 VRTFSPSDQKAI---ACALFGSHSITIALMKSKVKLLLHMGVPP 200
           V+T + +  ++     C L+         ++S ++ ++ MG  P
Sbjct: 127 VKTITLTSSRSDFYKVCELY-------PYIESSIRKVIEMGFDP 163