Miyakogusa Predicted Gene

Lj0g3v0304349.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304349.1 Non Chatacterized Hit- tr|E9C3V2|E9C3V2_CAPO3
Putative uncharacterized protein OS=Capsaspora
owczarz,43.04,0.0000001,SUBFAMILY NOT NAMED,NULL; VPRBP
PROTEIN-RELATED,NULL; seg,NULL,CUFF.20477.1
         (284 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31160.1 | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 | c...   285   2e-77

>AT4G31160.1 | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 |
            chr4:15145936-15152939 FORWARD LENGTH=1883
          Length = 1883

 Score =  285 bits (730), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/290 (56%), Positives = 186/290 (64%), Gaps = 42/290 (14%)

Query: 1    MLELCQAPPVD----DLHQYALGILHIVTLVPSSRKMIVNTTLSNNRAGIAVILDAANIR 56
            MLELCQ PPVD    DL QYA G+LHIVT +P  RK I + TLSNNRAGIAVILDAANI 
Sbjct: 795  MLELCQTPPVDRYLHDLLQYAFGVLHIVTSIPDGRKAIAHATLSNNRAGIAVILDAANIS 854

Query: 57   NR-VDPEIIQLALNVLVYLVCPPPSISNRPSGVSQGQLFVSSQTSNGPPSETRDRNAERN 115
            N  VDPEIIQ ALNVL+ LVCPPPS+SN+P  ++Q    V  Q +  P ++         
Sbjct: 855  NSIVDPEIIQPALNVLINLVCPPPSLSNKPP-LAQNHQPVPGQATTRPSTD--------- 904

Query: 116  TIDRVVHVTSQIDPRERNGDSSAGSAVVLSAQSVNNTPQTPVPAASSGLVGDRRIXXXXX 175
                                      V +  QS  N PQTPV  ASSGLVGDRRI     
Sbjct: 905  --------------------------VAVGTQSTGNAPQTPVAPASSGLVGDRRIFLGAG 938

Query: 176  XXXXXXXXPLEQGYHQAREAVRSNEGIMVLLHLLQPHID-SSLASLDCLRALACRVLLGL 234
                     LEQ Y QAREAVR N+GI +LL LLQP I  +  A+ DCLRALACRVLLGL
Sbjct: 939  TGSAGLAAKLEQVYRQAREAVRGNDGIKILLKLLQPRIYVNPPATPDCLRALACRVLLGL 998

Query: 235  ARDDTIAHILTKLQVGKKLSELIQDSGSSTLGTEQGRWQAELSQAAIELI 284
            ARDDTIA ILTKL+VGK LSELI+DSG  + GT+QGRWQAEL+Q A+ELI
Sbjct: 999  ARDDTIAQILTKLEVGKSLSELIRDSGGQSSGTDQGRWQAELAQVALELI 1048