Miyakogusa Predicted Gene

Lj0g3v0304209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304209.1 Non Chatacterized Hit- tr|B8B9N6|B8B9N6_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,95.65,0.0001,Ribosomal_L1,Ribosomal protein L1; 60S RIBOSOMAL
PROTEIN L10A,NULL; RIBOSOMAL PROTEIN L7AE FAMILY ME,CUFF.20466.1
         (110 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27530.2 | Symbols: PGY1 | Ribosomal protein L1p/L10e family ...   178   5e-46
AT2G27530.1 | Symbols: PGY1 | Ribosomal protein L1p/L10e family ...   178   5e-46
AT1G08360.1 | Symbols:  | Ribosomal protein L1p/L10e family | ch...   178   6e-46
AT5G22440.2 | Symbols:  | Ribosomal protein L1p/L10e family | ch...   178   8e-46
AT5G22440.1 | Symbols:  | Ribosomal protein L1p/L10e family | ch...   178   8e-46

>AT2G27530.2 | Symbols: PGY1 | Ribosomal protein L1p/L10e family |
           chr2:11763443-11764570 REVERSE LENGTH=216
          Length = 216

 Score =  178 bits (452), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/97 (89%), Positives = 93/97 (95%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASE+VIKQIPRLLGPGLNKAGKFPTLV+HQESLEAKVNETKA VKFQLKKVLCMGVAV
Sbjct: 109 FLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GN+SMEEKQ+FQNVQ+SVNFLVSLLKKNWQNV  L +
Sbjct: 169 GNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYL 205


>AT2G27530.1 | Symbols: PGY1 | Ribosomal protein L1p/L10e family |
           chr2:11763443-11764570 REVERSE LENGTH=216
          Length = 216

 Score =  178 bits (452), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/97 (89%), Positives = 93/97 (95%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASE+VIKQIPRLLGPGLNKAGKFPTLV+HQESLEAKVNETKA VKFQLKKVLCMGVAV
Sbjct: 109 FLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GN+SMEEKQ+FQNVQ+SVNFLVSLLKKNWQNV  L +
Sbjct: 169 GNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYL 205


>AT1G08360.1 | Symbols:  | Ribosomal protein L1p/L10e family |
           chr1:2636231-2637694 FORWARD LENGTH=216
          Length = 216

 Score =  178 bits (452), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 87/97 (89%), Positives = 93/97 (95%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASE+VIKQIPRLLGPGLNKAGKFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAV
Sbjct: 109 FLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GN+SMEEKQIFQNVQ+SVNFLVSLLKKNWQNV  L +
Sbjct: 169 GNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYL 205


>AT5G22440.2 | Symbols:  | Ribosomal protein L1p/L10e family |
           chr5:7435328-7436486 REVERSE LENGTH=217
          Length = 217

 Score =  178 bits (451), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 87/97 (89%), Positives = 93/97 (95%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASE+VIKQIPRLLGPGLNKAGKFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAV
Sbjct: 110 FLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAV 169

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GN+SMEEKQIFQNVQ+SVNFLVSLLKKNWQNV  L +
Sbjct: 170 GNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYL 206


>AT5G22440.1 | Symbols:  | Ribosomal protein L1p/L10e family |
           chr5:7435328-7436486 REVERSE LENGTH=217
          Length = 217

 Score =  178 bits (451), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 87/97 (89%), Positives = 93/97 (95%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASE+VIKQIPRLLGPGLNKAGKFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAV
Sbjct: 110 FLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAV 169

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GN+SMEEKQIFQNVQ+SVNFLVSLLKKNWQNV  L +
Sbjct: 170 GNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYL 206