Miyakogusa Predicted Gene

Lj0g3v0304099.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304099.1 Non Chatacterized Hit- tr|B9RSS0|B9RSS0_RICCO
Putative uncharacterized protein OS=Ricinus communis G,53.85,3e-19,
,CUFF.20453.1
         (93 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23590.1 | Symbols: RFR1, MED33A | REF4-related 1 | chr3:8467...    84   1e-17
AT2G48110.1 | Symbols: REF4, MED33B | reduced epidermal fluoresc...    80   3e-16

>AT3G23590.1 | Symbols: RFR1, MED33A | REF4-related 1 |
           chr3:8467638-8473469 FORWARD LENGTH=1309
          Length = 1309

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 60/88 (68%)

Query: 2   LRSHIGSPNYEMTMKSIDDVLQLSHTFSQEVCGPGVVLVEFIFSIVWQLLEASLDDEGLL 61
           ++ HI  P+Y+  M S+ ++L+LS  F  +   PGV+LVEF+F +V QLL+A+L DEGLL
Sbjct: 118 IKDHISGPHYQKVMISVSNILRLSELFDLDTSKPGVLLVEFVFKMVSQLLDAALSDEGLL 177

Query: 62  GHGPENNPRWLSRSCDMNIDGPVCFSEK 89
               +++ +WL +S DM ID P  ++EK
Sbjct: 178 ELSQDSSSQWLVKSQDMEIDAPERYNEK 205


>AT2G48110.1 | Symbols: REF4, MED33B | reduced epidermal
           fluorescence 4 | chr2:19673370-19679494 FORWARD
           LENGTH=1275
          Length = 1275

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 51/77 (66%)

Query: 6   IGSPNYEMTMKSIDDVLQLSHTFSQEVCGPGVVLVEFIFSIVWQLLEASLDDEGLLGHGP 65
           I +P Y  TM SIDD+L LS TF  +   PG +L+ F+FSIVW+LL+ASLD+EGLL    
Sbjct: 123 IRAPGYHKTMNSIDDILHLSETFGVQDQEPGSILLAFVFSIVWELLDASLDEEGLLELTS 182

Query: 66  ENNPRWLSRSCDMNIDG 82
               +W S   DM++DG
Sbjct: 183 NKRSKWPSSPHDMDLDG 199