Miyakogusa Predicted Gene

Lj0g3v0304089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304089.1 Non Chatacterized Hit- tr|I1JNR8|I1JNR8_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,72.81,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.20452.1
         (778 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G48110.1 | Symbols: REF4, MED33B | reduced epidermal fluoresc...   891   0.0  
AT3G23590.1 | Symbols: RFR1, MED33A | REF4-related 1 | chr3:8467...   803   0.0  

>AT2G48110.1 | Symbols: REF4, MED33B | reduced epidermal fluorescence
            4 | chr2:19673370-19679494 FORWARD LENGTH=1275
          Length = 1275

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/783 (59%), Positives = 558/783 (71%), Gaps = 12/783 (1%)

Query: 1    MSGWASLMKGSQLTPELVNVLVATPACCLAEIEKIYEIAINGSDEEKISAATILCGASLI 60
            +S W+ +MKGS LTP L N L+ TPA  LAEIEK+YE+A  GS++EKI+ A+ILCGASL 
Sbjct: 492  ISCWSLVMKGSPLTPSLTNSLITTPASSLAEIEKMYEVATTGSEDEKIAVASILCGASLF 551

Query: 61   RGWNIQEHAILFITKLLSPIVPPDHSGTESHLISQAPFLNVLLVGISYVACVRIFSLHGL 120
            RGW+IQEH I+FI  LLSP  P D SG+ SHLI+ APFLNVLLVGIS + CV IFSLHG+
Sbjct: 552  RGWSIQEHVIIFIVTLLSPPAPADLSGSYSHLINSAPFLNVLLVGISPIDCVHIFSLHGV 611

Query: 121  VPVLAAGLMLITEVFGSCVPDISWTLATGEKLSPREVFSNAFTLLLRFWRFNLPPVEQVR 180
            VP+LA  LM I E FGS VP+I+WTL TGE +S   VFS AFTLLLR WRF+ PP++ V 
Sbjct: 612  VPLLAGALMPICEAFGSGVPNITWTLPTGELISSHAVFSTAFTLLLRLWRFDHPPLDYVL 671

Query: 181  RGAATPPFGSLLSPECLLLVRNCKLASFGSSAKDRQKLKRLSKFLSFPIESVYMDSFPKL 240
                 PP G   SPE LLLVRNC+L  FG S KDR   +R SK +   ++ ++MDSFP+L
Sbjct: 672  --GDVPPVGPQPSPEYLLLVRNCRLECFGKSPKDRMARRRFSKVIDISVDPIFMDSFPRL 729

Query: 241  SFWYRQHQECIASTHSSLAPGGPDHQIVDALLSMMSTKVTNGAEPSTPTTLGSNSSPGSA 300
              WYRQHQEC+AS  S L  G P H IVD+LLSMM  K   G   S   + GS+S   S 
Sbjct: 730  KQWYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKANKGGSQSLTPSSGSSSLSTSG 789

Query: 301  LDDTLMKLKVPAWDILAAIPFVLDASLTACAHGRLSTCDLATGLKALADFFPASLVTIAS 360
             DD+  +LK+PAWDIL A PFVLDA+LTACAHG LS  +LATGLK LADF PA+L T+ S
Sbjct: 790  GDDSSDQLKLPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKILADFLPATLGTMVS 849

Query: 361  YFSAEVTRGIWKPAFMNGSDWPSPAANLSLVEQQIKNILAATGVDVPSLAVDGDSPPTLP 420
            YFS+EVTRG+WKP  MNG+DWPSPAANL+ VEQQI+ ILAATGVDVP L  DG S  TLP
Sbjct: 850  YFSSEVTRGLWKPVSMNGTDWPSPAANLASVEQQIEKILAATGVDVPRLPADGISAATLP 909

Query: 421  LPLAAFVSLTLTYRLEKATRRFLVLIAPALEALASSCAWPCMPIVASLWIQKAKRWNDYF 480
            LPLAA VSLT+TY+L+KAT RFLVL+ PAL++LA++C WPCMPIV SLW QK KRW+D+ 
Sbjct: 910  LPLAALVSLTITYKLDKATERFLVLVGPALDSLAAACPWPCMPIVTSLWTQKVKRWSDFL 969

Query: 481  LFSASSTIFHHNRDAVVQLLKCCFTSTLGLD-SASVYNNSGVSALLGNGL-----GGTSP 534
            +FSAS T+FHHNRDAV+QLL+ CFT TLGL  ++ + +  GV ALLG+G      GG S 
Sbjct: 970  IFSASRTVFHHNRDAVIQLLRSCFTCTLGLTPTSQLCSYGGVGALLGHGFGSRYSGGIST 1029

Query: 535  VSPGILYFKVYRYIEDNSFLTEEILSTLMLSVRDIASSECELPKRGVKKVNKTKHGRKHG 594
             +PGILY KV+R I D  FLTEEILS LM SV+ IA+   ELP    +K+ KTK G ++G
Sbjct: 1030 AAPGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIATR--ELPAGQAEKLKKTKDGSRYG 1087

Query: 595  LVS-SLARSMARVKHAALLGASLVWISGGQKLVQSLIMETLPSWFLTAQ-EGGEPGVVVG 652
            +   SL+ +M RVK AA LGASLVWISGG  LVQ+LI ETLPSWF++   E  E G +V 
Sbjct: 1088 IGQVSLSLAMRRVKLAASLGASLVWISGGLNLVQALIKETLPSWFISVHGEEDELGGMVP 1147

Query: 653  MLRGHVLAFFVMLSGAFAWGIDQCSPPPKRRAKVLGLHLEFLASTLEKNTSLRCHFTTWR 712
            MLRG+ LA+F +LS AFAWG+D   P  KRR +VL LHLEF+ S LE   SL C + TW+
Sbjct: 1148 MLRGYALAYFAILSSAFAWGVDSSYPASKRRPRVLWLHLEFMVSALEGKISLGCDWATWQ 1207

Query: 713  TYVSGFVSLMVNCAPVWVREVDVIXXXXXXXXXXXXXXXXXXXXXXXXGGIGVMGAAAEM 772
             YV+GFVSLMV C P WV EVDV                         GG+G MGAA E+
Sbjct: 1208 AYVTGFVSLMVQCTPAWVLEVDVEVIKRLSKSLRQWNEQDLALALLCAGGLGTMGAATEL 1267

Query: 773  IIE 775
            I+E
Sbjct: 1268 IVE 1270


>AT3G23590.1 | Symbols: RFR1, MED33A | REF4-related 1 |
            chr3:8467638-8473469 FORWARD LENGTH=1309
          Length = 1309

 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/784 (54%), Positives = 542/784 (69%), Gaps = 17/784 (2%)

Query: 4    WASLMKGSQLTPELVNVLVATPACCLAEIEKIYEIAINGSDEEKISAATILCGASLIRGW 63
            W+S +KG+ L   +VN LV+ PA  LAE+EK++E+A+ GSD+EKISAAT+LCGASL RGW
Sbjct: 532  WSSFVKGAPLNAAMVNTLVSVPASSLAELEKLFEVAVKGSDDEKISAATVLCGASLTRGW 591

Query: 64   NIQEHAILFITKLLSPIVPPDHSGTESHLISQAPFLNVLLVGISYVACVRIFSLHGLVPV 123
            NIQEH + ++T+LLSP VP D+S  E+HLI  A  LNV++VGI  V  ++IFSLHG+VP 
Sbjct: 592  NIQEHTVEYLTRLLSPPVPADYSRAENHLIGYACMLNVVIVGIGSVDSIQIFSLHGMVPQ 651

Query: 124  LAAGLMLITEVFGSCVPDISWTLATGEKLSPREVFSNAFTLLLRFWRFNLPPVEQVRRGA 183
            LA  LM I E FGS  P +SWTL +GE +S   VFSNAFTLLL+ WRFN PP+E      
Sbjct: 652  LACSLMPICEEFGSYTPSVSWTLPSGEAISAYSVFSNAFTLLLKLWRFNHPPIEH--GVG 709

Query: 184  ATPPFGSLLSPECLLLVRNCKLASFGSSAKDRQKLKRLSKFL-SFPIESVYMDSFPKLSF 242
              P  GS L+PE LL VRN  L S     +DR + KRLS+   +   + V++DSFPKL  
Sbjct: 710  DVPTVGSQLTPEHLLSVRNSYLVSSEILDRDRNR-KRLSEVARAASCQPVFVDSFPKLKV 768

Query: 243  WYRQHQECIASTHSSLAPGGPDHQIVDALLSMMSTKVTNGAEPSTPTTLGSNSSPGSALD 302
            WYRQHQ CIA+T S L  G P HQ V+ALL+M   KV  G++   P   G++SS G+A +
Sbjct: 769  WYRQHQRCIAATLSGLTHGSPVHQTVEALLNMTFGKV-RGSQTLNPVNSGTSSSSGAASE 827

Query: 303  DTLMKLKVPAWDILAAIPFVLDASLTACAHGRLSTCDLATGLKALADFFPASLVTIASYF 362
            D+ ++ + PAWDIL A+P+V+DA+LTAC HGRLS   LATGLK LADF PASL TI SYF
Sbjct: 828  DSNIRPEFPAWDILKAVPYVVDAALTACTHGRLSPRQLATGLKDLADFLPASLATIVSYF 887

Query: 363  SAEVTRGIWKPAFMNGSDWPSPAANLSLVEQQIKNILAATGVDVPSLAVDGDSPPTLPLP 422
            SAEV+RG+WKP FMNG DWPSPA NLS VE+ I  ILA TGVD+PSLA  G SP TLPLP
Sbjct: 888  SAEVSRGVWKPVFMNGVDWPSPATNLSTVEEYITKILATTGVDIPSLAPGGSSPATLPLP 947

Query: 423  LAAFVSLTLTYRLEKATRRFLVLIAPALEALASSCAWPCMPIVASLWIQKAKRWNDYFLF 482
            LAAFVSLT+TY+++KA+ RFL L  PALE LA+ C WPCMPIVASLW QKAKRW D+ +F
Sbjct: 948  LAAFVSLTITYKIDKASERFLNLAGPALECLAAGCPWPCMPIVASLWTQKAKRWFDFLVF 1007

Query: 483  SASSTIFHHNRDAVVQLLKCCFTSTLGLDSASVYNNSGVSALLGNGL-----GGTSPVSP 537
            SAS T+F HN+DAV+QLL+ CF++TLGL++A + N+ GV ALLG+G      GG SPV+P
Sbjct: 1008 SASRTVFLHNQDAVIQLLRNCFSATLGLNAAPMSNDGGVGALLGHGFGSHFYGGISPVAP 1067

Query: 538  GILYFKVYRYIEDNSFLTEEILSTLMLSVRDIASSECELPKRGVKKVNKTKHGRKHGLVS 597
            GILY ++YR + D   ++EEILS L+ SV DIA +   L K  ++K+   K+G ++G  S
Sbjct: 1068 GILYLRMYRALRDTVSVSEEILSLLIHSVEDIAQN--RLSKEKLEKLKTVKNGSRYG-QS 1124

Query: 598  SLARSMARVKHAALLGASLVWISGGQKLVQSLIMETLPSWFLTAQEGGE---PGVVVGML 654
            SLA +M +VK AA L ASLVW++GG  +V  LI ET+PSWFL+  +      P  +V  L
Sbjct: 1125 SLATAMTQVKLAASLSASLVWLTGGLGVVHVLIKETIPSWFLSTDKSDREQGPSDLVAEL 1184

Query: 655  RGHVLAFFVMLSGAFAWGIDQCSPPPKRRAK-VLGLHLEFLASTLEKNTSLRCHFTTWRT 713
            RGH LA+FV+L GA  WG+D  S   KRR + +LG HLEF+AS L+   S+ C   TWRT
Sbjct: 1185 RGHALAYFVVLCGALTWGVDSRSSASKRRRQAILGSHLEFIASALDGKISVGCETATWRT 1244

Query: 714  YVSGFVSLMVNCAPVWVREVDVIXXXXXXXXXXXXXXXXXXXXXXXXGGIGVMGAAAEMI 773
            Y+SG VSLMV+C P+WV E+D                          GG+  M  AA+ I
Sbjct: 1245 YISGLVSLMVSCLPLWVTEIDTEVLKSLSNGLRKWGKDELAIVLLSLGGLKTMDYAADFI 1304

Query: 774  IELE 777
            I L 
Sbjct: 1305 IHLR 1308