Miyakogusa Predicted Gene

Lj0g3v0304079.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304079.1 tr|G7K6C0|G7K6C0_MEDTR F-box/kelch-repeat protein
OS=Medicago truncatula GN=MTR_5g069950 PE=4
SV=1,32.04,8e-19,F_box_assoc_1: F-box protein interaction domain,F-box
associated interaction domain,CUFF.20451.1
         (301 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23880.1 | Symbols:  | F-box and associated interaction domai...    72   5e-13
AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    58   8e-09
AT3G62380.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box asso...    52   6e-07
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ...    51   1e-06
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ...    51   1e-06

>AT3G23880.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:8622061-8623155
           REVERSE LENGTH=364
          Length = 364

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 132/298 (44%), Gaps = 43/298 (14%)

Query: 6   GCYLLKDGHLVIGSSNGLICFGNFYDVGPIEEFWVQLWNPATHLKSKKSPTFNLSMRTSV 65
           G  L +D + V+G+ +GL+CF   YD        + LWNP   L+ + S +    + TS 
Sbjct: 102 GELLGRDYYQVVGTCHGLVCFHVDYDKS------LYLWNPTIKLQQRLSSS---DLETSD 152

Query: 66  DAPPGKVNLGFGYDNLHDTYKVVLVHWNCTKQKMETMVYCVNDIFCRKILSDPCSPILLN 125
           D     V  GFGYD   D YKVV +     + K+ET +Y       R   S P   ++ +
Sbjct: 153 DECV--VTYGFGYDESEDDYKVVALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVAD 210

Query: 126 QIK-GQFVGGCLNWLALKNMNDIKYQWDNVTLDQLVIASFDMSKEVYRYLPLP----KGV 180
           + + G ++ G LNW A  + +               I S+DMS++ ++ LP P    +G 
Sbjct: 211 KSRSGIYINGTLNWAATSSSS------------SWTIISYDMSRDEFKELPGPVCCGRGC 258

Query: 181 TEVPRFEPSLKVLGNHMYLFHDHNSIHLFVWKMVKYGALESWTQLLSISYERLHCIGFPY 240
                F  +L  L   + +       +  VW M ++G + SW++LLSI        G   
Sbjct: 259 -----FTMTLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSIP-------GLTD 306

Query: 241 IPVPMFLLEDGDILMIAITENLEFIKYNIRDYSMEYIPNPNEVFWMDAYGYVPSLVSP 298
              P++ + DG ++++     L    YN  +    Y  + +     DA  Y+ ++VSP
Sbjct: 307 FVRPLW-ISDGLVVLLEFRSGLAL--YNCSNGRFHYPVSNSISGCRDAKVYLKTMVSP 361


>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 41/290 (14%)

Query: 16  VIGSSNGLICFGNFYDVGPIEEFWVQLWNPATHLKSKKSPTFNLSMRTSVDAPPGKVNLG 75
           ++GSSNGL+C      + P  E  V L+NP T   SK+ P  N   ++           G
Sbjct: 165 IVGSSNGLVC------ISP-GEGAVFLYNPTTG-DSKRLPE-NFRPKSVEYERDNFQTYG 215

Query: 76  FGYDNLHDTYKVVLVHWNCTKQKMETMVYCVNDIFCRKILSDPCSPILLNQIKGQFVGGC 135
           FG+D L D YK+V +    ++  ++  VY +     R+I +        +   G    G 
Sbjct: 216 FGFDGLTDDYKLVKL-VATSEDILDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGA 274

Query: 136 LNWLALKNMNDIKYQWDNVTLDQLVIASFDMSKEVYRYLPLPKGVTEVP-RFEP-SLKVL 193
           ++W+  ++ +           +Q V+ +FD+  E +R +P+P    +   RF    +  L
Sbjct: 275 IHWVFTESRH-----------NQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSL 323

Query: 194 GNHMYLFHDHNSIHLFVWKMVKYGALESWTQL-LSISYERLHCIGFPYIPVPMFLLEDGD 252
              + + +    +H  +W M +YG  +SW+++ +++ Y  +  +        + L  DGD
Sbjct: 324 NGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRIRINLLYRSMKPLCSTKNDEEVLLELDGD 383

Query: 253 ILM----IAITENLEFIKYNIRDYSMEYIPNPNEVFWMDAYGYVPSLVSP 298
           +++       + NL      + D               +A  YV SL+SP
Sbjct: 384 LVLYNFETNASSNLGICGVKLSD-------------GFEANTYVESLISP 420


>AT3G62380.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box
           associated interaction domain (InterPro:IPR017451); BEST
           Arabidopsis thaliana protein match is: F-box family
           protein (TAIR:AT1G71320.1); Has 422 Blast hits to 419
           proteins in 26 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other
           Eukaryotes - 2 (source: NCBI BLink). |
           chr3:23083609-23084852 REVERSE LENGTH=325
          Length = 325

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 23/171 (13%)

Query: 16  VIGSSNGLICFGNFYDVGPIEEFWVQLWNPATHLKSKKSPTF--NLSMRT--SVDAPPGK 71
           ++G  NG++C    YD+G     ++ L NPAT      SP F    + RT  S D P   
Sbjct: 74  IMGYCNGIVCI---YDLG-----YIYLINPATRKLRILSPEFLREYTGRTGWSNDLP--- 122

Query: 72  VNLGFGYDNLHDTYKVVLVHWNCTKQKMETMVYCVNDIFCRKILSDPCSPILLNQIKGQF 131
           +N+GFG D +  TYKV+L++    +  ++T    + +   R +        L N  +  F
Sbjct: 123 INVGFGRDMVTGTYKVILMYL-FDRNFVKTEALNLKNGERRYVYFPISYGQLGNDKRSIF 181

Query: 132 VGGCLNWLALKNMNDIKYQWDNVTLDQLVIASFDMSKEVYRYLPLPKGVTE 182
             G L WL   ++       D  T   + +A+ D+  E +RY+PLP   T+
Sbjct: 182 ANGSLYWLPKPDV-------DFYTNQLIKLAAIDLHTETFRYVPLPSWYTK 225


>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 46/236 (19%)

Query: 16  VIGSSNGLICFGNFYDVGPIEEFWVQLWNPATHLKSKKSPTFNLSMRTSVDAPPGKVNLG 75
           V GSSNGLI   N     P +   + ++NP+T    +  P+       S+D P G    G
Sbjct: 91  VFGSSNGLIGLSN----SPTD---LAVFNPSTRQIHRLPPS-------SIDLPDGSSTRG 136

Query: 76  F-----GYDNLHDTYKVV-LVHWNCTKQK-------METMVYCVNDIFCRKILSDPCSPI 122
           +     GYD++ D YKVV +V +    +         E  V+ +     ++I S   S  
Sbjct: 137 YVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQ 196

Query: 123 LL---------NQIKGQFVGGCLNWLALKNMNDIKYQWDNVTLDQLVIASFDMSKEVYRY 173
           LL          +  G   G  L+W+  +    I +          +I  FD++ E +  
Sbjct: 197 LLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFN---------LIVRFDLALEEFEI 247

Query: 174 LPLPKGVTEVP-RFEPSLKVLGNHMYLFHDHNSIHLFVWKMVKYGALESWTQLLSI 228
           +  P+ V       +  + VL   + L  +++  ++ VW M +Y   +SWT++ ++
Sbjct: 248 VRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTV 303


>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 46/236 (19%)

Query: 16  VIGSSNGLICFGNFYDVGPIEEFWVQLWNPATHLKSKKSPTFNLSMRTSVDAPPGKVNLG 75
           V GSSNGLI   N     P +   + ++NP+T    +  P+       S+D P G    G
Sbjct: 91  VFGSSNGLIGLSN----SPTD---LAVFNPSTRQIHRLPPS-------SIDLPDGSSTRG 136

Query: 76  F-----GYDNLHDTYKVV-LVHWNCTKQK-------METMVYCVNDIFCRKILSDPCSPI 122
           +     GYD++ D YKVV +V +    +         E  V+ +     ++I S   S  
Sbjct: 137 YVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQ 196

Query: 123 LL---------NQIKGQFVGGCLNWLALKNMNDIKYQWDNVTLDQLVIASFDMSKEVYRY 173
           LL          +  G   G  L+W+  +    I +          +I  FD++ E +  
Sbjct: 197 LLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFN---------LIVRFDLALEEFEI 247

Query: 174 LPLPKGVTEVP-RFEPSLKVLGNHMYLFHDHNSIHLFVWKMVKYGALESWTQLLSI 228
           +  P+ V       +  + VL   + L  +++  ++ VW M +Y   +SWT++ ++
Sbjct: 248 VRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTV 303