Miyakogusa Predicted Gene
- Lj0g3v0304079.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0304079.1 tr|G7K6C0|G7K6C0_MEDTR F-box/kelch-repeat protein
OS=Medicago truncatula GN=MTR_5g069950 PE=4
SV=1,32.04,8e-19,F_box_assoc_1: F-box protein interaction domain,F-box
associated interaction domain,CUFF.20451.1
(301 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23880.1 | Symbols: | F-box and associated interaction domai... 72 5e-13
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 58 8e-09
AT3G62380.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box asso... 52 6e-07
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ... 51 1e-06
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ... 51 1e-06
>AT3G23880.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:8622061-8623155
REVERSE LENGTH=364
Length = 364
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 132/298 (44%), Gaps = 43/298 (14%)
Query: 6 GCYLLKDGHLVIGSSNGLICFGNFYDVGPIEEFWVQLWNPATHLKSKKSPTFNLSMRTSV 65
G L +D + V+G+ +GL+CF YD + LWNP L+ + S + + TS
Sbjct: 102 GELLGRDYYQVVGTCHGLVCFHVDYDKS------LYLWNPTIKLQQRLSSS---DLETSD 152
Query: 66 DAPPGKVNLGFGYDNLHDTYKVVLVHWNCTKQKMETMVYCVNDIFCRKILSDPCSPILLN 125
D V GFGYD D YKVV + + K+ET +Y R S P ++ +
Sbjct: 153 DECV--VTYGFGYDESEDDYKVVALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVAD 210
Query: 126 QIK-GQFVGGCLNWLALKNMNDIKYQWDNVTLDQLVIASFDMSKEVYRYLPLP----KGV 180
+ + G ++ G LNW A + + I S+DMS++ ++ LP P +G
Sbjct: 211 KSRSGIYINGTLNWAATSSSS------------SWTIISYDMSRDEFKELPGPVCCGRGC 258
Query: 181 TEVPRFEPSLKVLGNHMYLFHDHNSIHLFVWKMVKYGALESWTQLLSISYERLHCIGFPY 240
F +L L + + + VW M ++G + SW++LLSI G
Sbjct: 259 -----FTMTLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSIP-------GLTD 306
Query: 241 IPVPMFLLEDGDILMIAITENLEFIKYNIRDYSMEYIPNPNEVFWMDAYGYVPSLVSP 298
P++ + DG ++++ L YN + Y + + DA Y+ ++VSP
Sbjct: 307 FVRPLW-ISDGLVVLLEFRSGLAL--YNCSNGRFHYPVSNSISGCRDAKVYLKTMVSP 361
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD LENGTH=427
Length = 427
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 41/290 (14%)
Query: 16 VIGSSNGLICFGNFYDVGPIEEFWVQLWNPATHLKSKKSPTFNLSMRTSVDAPPGKVNLG 75
++GSSNGL+C + P E V L+NP T SK+ P N ++ G
Sbjct: 165 IVGSSNGLVC------ISP-GEGAVFLYNPTTG-DSKRLPE-NFRPKSVEYERDNFQTYG 215
Query: 76 FGYDNLHDTYKVVLVHWNCTKQKMETMVYCVNDIFCRKILSDPCSPILLNQIKGQFVGGC 135
FG+D L D YK+V + ++ ++ VY + R+I + + G G
Sbjct: 216 FGFDGLTDDYKLVKL-VATSEDILDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGA 274
Query: 136 LNWLALKNMNDIKYQWDNVTLDQLVIASFDMSKEVYRYLPLPKGVTEVP-RFEP-SLKVL 193
++W+ ++ + +Q V+ +FD+ E +R +P+P + RF + L
Sbjct: 275 IHWVFTESRH-----------NQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSL 323
Query: 194 GNHMYLFHDHNSIHLFVWKMVKYGALESWTQL-LSISYERLHCIGFPYIPVPMFLLEDGD 252
+ + + +H +W M +YG +SW+++ +++ Y + + + L DGD
Sbjct: 324 NGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRIRINLLYRSMKPLCSTKNDEEVLLELDGD 383
Query: 253 ILM----IAITENLEFIKYNIRDYSMEYIPNPNEVFWMDAYGYVPSLVSP 298
+++ + NL + D +A YV SL+SP
Sbjct: 384 LVLYNFETNASSNLGICGVKLSD-------------GFEANTYVESLISP 420
>AT3G62380.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box
associated interaction domain (InterPro:IPR017451); BEST
Arabidopsis thaliana protein match is: F-box family
protein (TAIR:AT1G71320.1); Has 422 Blast hits to 419
proteins in 26 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). |
chr3:23083609-23084852 REVERSE LENGTH=325
Length = 325
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 23/171 (13%)
Query: 16 VIGSSNGLICFGNFYDVGPIEEFWVQLWNPATHLKSKKSPTF--NLSMRT--SVDAPPGK 71
++G NG++C YD+G ++ L NPAT SP F + RT S D P
Sbjct: 74 IMGYCNGIVCI---YDLG-----YIYLINPATRKLRILSPEFLREYTGRTGWSNDLP--- 122
Query: 72 VNLGFGYDNLHDTYKVVLVHWNCTKQKMETMVYCVNDIFCRKILSDPCSPILLNQIKGQF 131
+N+GFG D + TYKV+L++ + ++T + + R + L N + F
Sbjct: 123 INVGFGRDMVTGTYKVILMYL-FDRNFVKTEALNLKNGERRYVYFPISYGQLGNDKRSIF 181
Query: 132 VGGCLNWLALKNMNDIKYQWDNVTLDQLVIASFDMSKEVYRYLPLPKGVTE 182
G L WL ++ D T + +A+ D+ E +RY+PLP T+
Sbjct: 182 ANGSLYWLPKPDV-------DFYTNQLIKLAAIDLHTETFRYVPLPSWYTK 225
>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 46/236 (19%)
Query: 16 VIGSSNGLICFGNFYDVGPIEEFWVQLWNPATHLKSKKSPTFNLSMRTSVDAPPGKVNLG 75
V GSSNGLI N P + + ++NP+T + P+ S+D P G G
Sbjct: 91 VFGSSNGLIGLSN----SPTD---LAVFNPSTRQIHRLPPS-------SIDLPDGSSTRG 136
Query: 76 F-----GYDNLHDTYKVV-LVHWNCTKQK-------METMVYCVNDIFCRKILSDPCSPI 122
+ GYD++ D YKVV +V + + E V+ + ++I S S
Sbjct: 137 YVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQ 196
Query: 123 LL---------NQIKGQFVGGCLNWLALKNMNDIKYQWDNVTLDQLVIASFDMSKEVYRY 173
LL + G G L+W+ + I + +I FD++ E +
Sbjct: 197 LLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFN---------LIVRFDLALEEFEI 247
Query: 174 LPLPKGVTEVP-RFEPSLKVLGNHMYLFHDHNSIHLFVWKMVKYGALESWTQLLSI 228
+ P+ V + + VL + L +++ ++ VW M +Y +SWT++ ++
Sbjct: 248 VRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTV 303
>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 46/236 (19%)
Query: 16 VIGSSNGLICFGNFYDVGPIEEFWVQLWNPATHLKSKKSPTFNLSMRTSVDAPPGKVNLG 75
V GSSNGLI N P + + ++NP+T + P+ S+D P G G
Sbjct: 91 VFGSSNGLIGLSN----SPTD---LAVFNPSTRQIHRLPPS-------SIDLPDGSSTRG 136
Query: 76 F-----GYDNLHDTYKVV-LVHWNCTKQK-------METMVYCVNDIFCRKILSDPCSPI 122
+ GYD++ D YKVV +V + + E V+ + ++I S S
Sbjct: 137 YVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQ 196
Query: 123 LL---------NQIKGQFVGGCLNWLALKNMNDIKYQWDNVTLDQLVIASFDMSKEVYRY 173
LL + G G L+W+ + I + +I FD++ E +
Sbjct: 197 LLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFN---------LIVRFDLALEEFEI 247
Query: 174 LPLPKGVTEVP-RFEPSLKVLGNHMYLFHDHNSIHLFVWKMVKYGALESWTQLLSI 228
+ P+ V + + VL + L +++ ++ VW M +Y +SWT++ ++
Sbjct: 248 VRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTV 303