Miyakogusa Predicted Gene

Lj0g3v0303829.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0303829.1 Non Chatacterized Hit- tr|I3S103|I3S103_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.13,0,Ribosomal_L10,Ribosomal protein L10/acidic P0; MRNA
TURNOVER PROTEIN 4 MRT4,NULL; 60S ACIDIC RIBOSOM,CUFF.20434.1
         (229 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G25260.1 | Symbols:  | Ribosomal protein L10 family protein |...   341   2e-94
AT3G11250.1 | Symbols:  | Ribosomal protein L10 family protein |...    59   3e-09
AT3G09200.1 | Symbols:  | Ribosomal protein L10 family protein |...    59   4e-09
AT2G40010.1 | Symbols:  | Ribosomal protein L10 family protein |...    57   1e-08

>AT1G25260.1 | Symbols:  | Ribosomal protein L10 family protein |
           chr1:8854163-8855766 REVERSE LENGTH=235
          Length = 235

 Score =  341 bits (875), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 166/235 (70%), Positives = 196/235 (83%), Gaps = 6/235 (2%)

Query: 1   MPKSKRNKQVTLSKTKKKGREHKEVIVNAIRDAAEKYSSLYVFSFENMRNLKFKEFRDQL 60
           MPKSKR++ VTLSKTKKKGREHKE IVN IR+A EKYSS+YVFSFENMRN+KFKEFR Q 
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60

Query: 61  KSSSRFFLGSNKVMQVALGRSASDEIKPRLYKVSKLLRGDSGMFFTNLSKEEVERLFNGY 120
           + + +FFLGSNKVMQVALGRSA DE++  +YKVSKLLRGD+G+  T++ KEEVE LFN Y
Sbjct: 61  RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120

Query: 121 EEYDFARTGGIATEKVDLQEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 180
           E+ DF+RTG IA E V+L+EGPLEQFTHEMEP LRK  MPVRLNKG VELV+DFVVCEEG
Sbjct: 121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEG 180

Query: 181 KPLSPEASRILRLLGIKMATFRLHLVCRWTPDDFELYIDGPGD------SDVECS 229
           K LSP+++ ILRLL +KMATF+L+L+CRW+P DFELY +   +      SDVE S
Sbjct: 181 KQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELYREDLSELYREDLSDVETS 235


>AT3G11250.1 | Symbols:  | Ribosomal protein L10 family protein |
           chr3:3521453-3522826 FORWARD LENGTH=323
          Length = 323

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 86/183 (46%), Gaps = 3/183 (1%)

Query: 35  EKYSSLYVFSFENMRNLKFKEFRDQLKSSSRFFLGSNKVMQVALGRSASDEIKPRLYKVS 94
           ++Y+ + V + +N+ + + +  R  L+  S   +G N +M+ ++   + +     +  + 
Sbjct: 22  DEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLL 81

Query: 95  KLLRGDSGMFFTNLSKEEVERLFNGYEEYDFARTGGIATEKVDLQEGPLEQFTHEMEPFL 154
            LL+G+ G+ FT    +EV      Y+    AR G +A   V +Q G           F 
Sbjct: 82  PLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGN-TGLDPSQTSFF 140

Query: 155 RKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLLGIKMATFRLHLVCRWTPDDF 214
           +   +P ++NKG VE+++   + ++G  +    + +L  LGI+   F   LV +   D+ 
Sbjct: 141 QVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIR--PFSYGLVVQSVYDNG 198

Query: 215 ELY 217
            ++
Sbjct: 199 SVF 201


>AT3G09200.1 | Symbols:  | Ribosomal protein L10 family protein |
           chr3:2823364-2825020 REVERSE LENGTH=320
          Length = 320

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 86/183 (46%), Gaps = 3/183 (1%)

Query: 35  EKYSSLYVFSFENMRNLKFKEFRDQLKSSSRFFLGSNKVMQVALGRSASDEIKPRLYKVS 94
           ++Y+ + V + +N+ + + +  R  L+  S   +G N +M+ ++   + +     +  + 
Sbjct: 22  DEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLL 81

Query: 95  KLLRGDSGMFFTNLSKEEVERLFNGYEEYDFARTGGIATEKVDLQEGPLEQFTHEMEPFL 154
            LL+G+ G+ FT    +EV      Y+    AR G +A   V +Q G           F 
Sbjct: 82  PLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGN-TGLDPSQTSFF 140

Query: 155 RKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLLGIKMATFRLHLVCRWTPDDF 214
           +   +P ++NKG VE+++   + ++G  +    + +L  LGI+   F   LV +   D+ 
Sbjct: 141 QVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIR--PFSYGLVVQSVYDNG 198

Query: 215 ELY 217
            ++
Sbjct: 199 SVF 201


>AT2G40010.1 | Symbols:  | Ribosomal protein L10 family protein |
           chr2:16708578-16710448 REVERSE LENGTH=317
          Length = 317

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 3/182 (1%)

Query: 36  KYSSLYVFSFENMRNLKFKEFRDQLKSSSRFFLGSNKVMQVALGRSASDEIKPRLYKVSK 95
           +YS + V + +N+ + + +  R  L+  S   +G N +M+ ++   A          +  
Sbjct: 24  EYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLP 83

Query: 96  LLRGDSGMFFTNLSKEEVERLFNGYEEYDFARTGGIATEKVDLQEGPLEQFTHEMEPFLR 155
           LL+G+ G+ FT    +EV      Y+    AR G +A   V +Q G           F +
Sbjct: 84  LLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGN-TGLDPSQTSFFQ 142

Query: 156 KQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLLGIKMATFRLHLVCRWTPDDFE 215
              +P ++NKG VE+++   + ++G  +    + +L  LGI+   F   LV     D+  
Sbjct: 143 VLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIR--PFSYGLVVESVYDNGS 200

Query: 216 LY 217
           ++
Sbjct: 201 VF 202