Miyakogusa Predicted Gene

Lj0g3v0303699.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0303699.1 tr|B9I7G5|B9I7G5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_894812 PE=4
SV=1,56.25,7e-19,PPR,Pentatricopeptide repeat; PPR: pentatricopeptide
repeat domain,Pentatricopeptide repeat; PENTATR,CUFF.20422.1
         (110 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21880.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   109   3e-25
AT4G04790.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    95   1e-20

>AT4G21880.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:11605156-11610651 FORWARD
           LENGTH=843
          Length = 843

 Score =  109 bits (273), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/97 (48%), Positives = 73/97 (75%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTIHHYNLESNDETFRRMIDLFMKMKD 60
           MCEAGL +S  +LHS+LQ  +++ E+NLV R++S + + +++ N ETFR+ I+L +++KD
Sbjct: 419 MCEAGLVISANILHSLLQAIEQILEFNLVQRIYSIMSNKSVKPNSETFRKSINLCIRIKD 478

Query: 61  FEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNIS 97
           FEGAY ML +LK  N+ P + MYN+IMA  FRE+ ++
Sbjct: 479 FEGAYNMLGNLKNFNLAPNSSMYNSIMAGYFREKKVN 515


>AT4G04790.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:2435007-2439344 REVERSE
           LENGTH=821
          Length = 821

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 67/99 (67%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTIHHYNLESNDETFRRMIDLFMKMKD 60
           M EAGL +S ++LHS+L   DE+ E++LV R+ S +   +++ N E FR +I L  ++KD
Sbjct: 399 MGEAGLMISADILHSLLHAIDEVLEFDLVRRIHSIMCTKSVKPNTENFRSIIRLCTRIKD 458

Query: 61  FEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNISDG 99
           FEGAY ML +LK  N+ P + M+N I+A  FRE+N+S  
Sbjct: 459 FEGAYNMLGNLKNFNLEPNSSMFNCILAGYFREKNVSSA 497