Miyakogusa Predicted Gene

Lj0g3v0303459.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0303459.2 Non Chatacterized Hit- tr|J3N5D7|J3N5D7_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB11G1,70.42,6e-18,
,CUFF.20408.2
         (71 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62450.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   105   9e-24

>AT3G62450.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: 24 plant structures; EXPRESSED
          DURING: 15 growth stages; Has 35 Blast hits to 35
          proteins in 15 species: Archae - 0; Bacteria - 0;
          Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
          Eukaryotes - 1 (source: NCBI BLink). |
          chr3:23098144-23098630 FORWARD LENGTH=74
          Length = 74

 Score =  105 bits (261), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 58/68 (85%)

Query: 2  KFLGWYLKIGIVSALLGASMELFMIKTGFYDKVTVLESEKRAWENSREAQAMRDALNPWR 61
          +FL WYLKI I SA++G  ME FMIKTGFYDKVTV+E+E+RA ENS EAQA+R+ALNPWR
Sbjct: 5  RFLDWYLKIAIGSAIIGGGMEFFMIKTGFYDKVTVIEAERRALENSPEAQAIREALNPWR 64

Query: 62 HIDAEGTK 69
          + DAE +K
Sbjct: 65 NKDAETSK 72