Miyakogusa Predicted Gene

Lj0g3v0303389.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0303389.2 Non Chatacterized Hit- tr|C5YBT5|C5YBT5_SORBI
Putative uncharacterized protein Sb06g001200
OS=Sorghu,27.93,4e-18,Transposase_24,Transposase, Ptta/En/Spm, plant;
coiled-coil,NULL; seg,NULL,CUFF.20402.2
         (734 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G40087.1 | Symbols:  | Plant transposase (Ptta/En/Spm family)...   124   4e-28
AT3G30200.1 | Symbols:  | Plant transposase (Ptta/En/Spm family)...    97   5e-20

>AT1G40087.1 | Symbols:  | Plant transposase (Ptta/En/Spm family) |
           chr1:14999762-15001868 REVERSE LENGTH=390
          Length = 390

 Score =  124 bits (310), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 130/275 (47%), Gaps = 15/275 (5%)

Query: 421 EC-ARAWTVQAIDEQGNEMKIQVTNPGVFDMPQGQRIVVPFDRQMRA-CGEAAALLSGAC 478
           EC    W ++ ID  GN     +T+  V+ M Q  R++V FD       G++  LL    
Sbjct: 30  ECKTFKWKIEVIDVDGNIEGKMMTSKDVWIM-QNHRVIVHFDEYTNQPIGDSGGLLGSWL 88

Query: 479 GRISTKPDNIPIYFESWPKVPDSYKKECFNALKNLFHFQASEVIAKRYCYLTMGRKYRNH 538
            ++S     +PI +  W  V    K   +  +++ F F    ++ K Y    +G K ++ 
Sbjct: 89  SQLSNDIMLLPINYTDWRLVSPHIKDRAWAVIQSKFRFD-DPMMRKDYVMGALGSKCKDV 147

Query: 539 KLNLWKLNFNPSYSREQLIEKV---PNGIPEDQWPLFVDYHLKPEYMEMCQKNVEARKKQ 595
           KL  W+      Y R  L E +   P  +PEDQW   V      ++ +M ++N + +K  
Sbjct: 148 KLRFWR-----EYKRNNLNETLQNRPEKVPEDQWSHLVHLIFTDKWRKMQERNTKNQKNH 202

Query: 596 TIPHTGGSKLLSRRQQEMEEEAGHAVGRGELYIATHKKKDGSYVNAEARSIVEKLEEQLG 655
            +PH  G K  SR++ E++ + G    R E +I + KK DGS+V+ EA+   E L   L 
Sbjct: 203 IMPHLCGRKSFSRKRDEIKIKTGKTPCRAEFFIESRKKHDGSFVSDEAKLRAEALTTLLN 262

Query: 656 ---QLVNTSEIASNDALAKVLGPDHAGRVRSLGLG 687
              Q+      + +D  ++V GP+  GRVR +G G
Sbjct: 263 LNPQVTYNGTASLDDEYSQVFGPERPGRVRCVGRG 297


>AT3G30200.1 | Symbols:  | Plant transposase (Ptta/En/Spm family) |
           chr3:11827752-11834262 REVERSE LENGTH=510
          Length = 510

 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 12/217 (5%)

Query: 477 ACGRISTKPDNIPIYFESWPKVPDSYKKECFNALKNLFHFQASEVIAKRYCYLTMGRKYR 536
             G++S     +PI +  W  V    K   +  +++ F F    ++ K Y    +G + +
Sbjct: 207 VIGQLSNDVMLLPINYTDWRLVSPHIKDRAWAVIQSKFRFD-DPMMRKDYVMGALGSRCK 265

Query: 537 NHKLNLWKLNFNPSYSREQL---IEKVPNGIPEDQWPLFVDYHLKPEYMEMCQKNVEARK 593
           + KL  W+      + R  L   +E  P  +PEDQW   V      ++ +M ++N + +K
Sbjct: 266 DVKLRFWR-----EHKRNNLNETLENRPEKVPEDQWSHLVHLRFTDKWRKMQERNTKNQK 320

Query: 594 KQTIPHTGGSKLLSRRQQEMEEEAGHAVGRGELYIATHKKKDGSYVNAEARSIVEKLEEQ 653
              +PH  G K  SR++ E++ + G    R E +I + KK DGS+V+ EA+     L   
Sbjct: 321 NHIMPHLCGRKSFSRKRDEIKIKTGKTPCRVEFFIESRKKHDGSFVSDEAKLRAIALTTL 380

Query: 654 LG---QLVNTSEIASNDALAKVLGPDHAGRVRSLGLG 687
           L    Q+      + +D  ++V GP+  GRV  +G G
Sbjct: 381 LNLNPQVTYNGTASLDDEYSQVFGPERPGRVHCVGRG 417