Miyakogusa Predicted Gene

Lj0g3v0302969.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0302969.1 Non Chatacterized Hit- tr|K3Y7Y3|K3Y7Y3_SETIT
Uncharacterized protein OS=Setaria italica GN=Si010324,36.84,2e-19,no
description,Pseudouridine synthase I, TruA,
C-terminal,gene.g23583.t1.1
         (135 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09800.1 | Symbols:  | Pseudouridine synthase family protein ...   115   7e-27

>AT1G09800.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:3177121-3180336 REVERSE LENGTH=372
          Length = 372

 Score =  115 bits (289), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 90/187 (48%), Gaps = 59/187 (31%)

Query: 5   WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM----------------- 47
           +  R       YFYRLLSG +PLS  EK+R WHVPE+LNL  M                 
Sbjct: 166 YHARYKAQERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFR 225

Query: 48  ----QAKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGC-------------- 89
               QAKSP+R+LDEL+++EV  +P FPS+ +R   N  +GDP  C              
Sbjct: 226 AAGCQAKSPMRSLDELNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTN 285

Query: 90  ------------------HR------KSEADIPLTVRLLVGVLKAVGTGNLTIPDVERIL 125
                             HR      +S   +   VRL+VG LK VGTG LT+ DVERIL
Sbjct: 286 VGEVEGSTEGDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERIL 345

Query: 126 NAKTVST 132
            AKTVS 
Sbjct: 346 EAKTVSA 352