Miyakogusa Predicted Gene
- Lj0g3v0302439.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0302439.1 Non Chatacterized Hit- tr|I1KYK4|I1KYK4_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,80.03,0,seg,NULL; CAF1,Ribonuclease CAF1; UNCHARACTERIZED,NULL;
POLY(A)-SPECIFIC RIBONUCLEASE/TARGET OF EGR1,CUFF.20326.1
(713 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G55870.1 | Symbols: ATPARN, AHG2 | Polynucleotidyl transferas... 740 0.0
AT1G55870.2 | Symbols: ATPARN, AHG2 | Polynucleotidyl transferas... 562 e-160
AT3G25430.1 | Symbols: | Polynucleotidyl transferase, ribonucle... 218 1e-56
>AT1G55870.1 | Symbols: ATPARN, AHG2 | Polynucleotidyl transferase,
ribonuclease H-like superfamily protein |
chr1:20895663-20898359 FORWARD LENGTH=689
Length = 689
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/622 (58%), Positives = 453/622 (72%), Gaps = 9/622 (1%)
Query: 28 FPLKTVTTANFEPSLVDLRRHVRSSDFVAIDLEMTGITSAPWRESLEFDRSDVRYLKVRD 87
FPLK VT +NFE +L DLR V+++DFVAIDLEMTG+TSAPWR+SLEFDR DVRYLKV+D
Sbjct: 36 FPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKD 95
Query: 88 SATRFAVVQFGVCPFRWDPSNNSFLAYPYNFYVFPRQELAGFGPCNEFLCQTTSMDFLAK 147
SA +FAVVQFGVCPFRWD SF++YP+NF+VFPRQEL P +EFLCQTTSMDFLAK
Sbjct: 96 SAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAK 155
Query: 148 YQFDFNVCIHEGISYLSREQEREAIRRLNSTYDSERPDICKLKDVRDIPLLSMADTLFTA 207
YQFDFN CIHEGISYLSR +E EA +RL + + D + ++ L+ +AD LF A
Sbjct: 156 YQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSG--ETEELKLVRLADVLFAA 213
Query: 208 RMKSKFSEWRDGLLHEQNQEDRIQKISEDSKEQFQVMFFKLQPALRLNGFTSHQLKLIQL 267
RM+ +EWR GLLH N +IS S + + +F ++PAL L GFTSHQL+++
Sbjct: 214 RMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQLRVLNS 273
Query: 268 VIRKNFKDLYYVSVNTEASGSQQIVLYTDSKDELNLIMKEVKDENHRMEEMKIQTAVGFR 327
V+RK+F DL Y+ N ++S S+ IV+YTDS + +MKE KDE R+ E KIQ+A+GFR
Sbjct: 274 VLRKHFGDLVYIHSNDKSSSSRDIVVYTDSDSDKENLMKEAKDERKRLAERKIQSAIGFR 333
Query: 328 HVIDLLSSEQKLIVGHNCLLDIAHVYNKFIRPLPETPEEFVASVNKCFPNIVDTKILLNT 387
VIDLL+SE+KLIVGHNC LDIAHVY+KF+ PLP T E+FVAS+N FP IVDTKILLN
Sbjct: 334 QVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVDTKILLNV 393
Query: 388 NSMLQGRMRGSRKSLASAFSLFCPQIAAGSGNTEPGSPSHVKVDIEVDDSRSSTWNPGGK 447
N ML RM+ S SL+SAFS CPQI S +++ V +D+E+D+ R S WN GGK
Sbjct: 394 NPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCSNWNAGGK 453
Query: 448 HEAGYDAFMTGCVFTQLCSDLGVDFKLHESSKELALNEKLQKYVNHLYISWMHGDIIDLS 507
HEAGYDAFMTGC+F Q C+ LG DFK H + A NEKL+KY+N LY+SW GDIIDL
Sbjct: 454 HEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTRGDIIDLR 513
Query: 508 TGDKVADSSPSYSLKRRYPQILFENIVIMWGFPSKLKANEIRNCISLVFGSSSVVSIYHL 567
TG AD+ R + +ENIV++W FP KLKA I+ CI FGS+SV S+YH+
Sbjct: 514 TGHSNADN-------WRVSKFKYENIVLIWNFPRKLKARGIKECICKAFGSASVTSVYHV 566
Query: 568 DSTAVFVQFSKTNLVSDFLLLKDTLERSDGPILVLHPLAKLLEGGNTCAANYDAYREICG 627
D +AVFV F + LV DFL LK LE SDGP+ VLHPL+K+LEGGNT AA+Y+AY+EIC
Sbjct: 567 DDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYEAYKEICS 626
Query: 628 STLSESLFADQAKAVGITWKTK 649
S +SE +F+DQA+ VG+ +T+
Sbjct: 627 SHVSEVMFSDQAETVGVKSRTR 648
>AT1G55870.2 | Symbols: ATPARN, AHG2 | Polynucleotidyl transferase,
ribonuclease H-like superfamily protein |
chr1:20896184-20898359 FORWARD LENGTH=540
Length = 540
Score = 562 bits (1449), Expect = e-160, Method: Compositional matrix adjust.
Identities = 279/508 (54%), Positives = 356/508 (70%), Gaps = 9/508 (1%)
Query: 142 MDFLAKYQFDFNVCIHEGISYLSREQEREAIRRLNSTYDSERPDICKLKDVRDIPLLSMA 201
MDFLAKYQFDFN CIHEGISYLSR +E EA +RL + + D + ++ L+ +A
Sbjct: 1 MDFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSG--ETEELKLVRLA 58
Query: 202 DTLFTARMKSKFSEWRDGLLHEQNQEDRIQKISEDSKEQFQVMFFKLQPALRLNGFTSHQ 261
D LF ARM+ +EWR GLLH N +IS S + + +F ++PAL L GFTSHQ
Sbjct: 59 DVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQ 118
Query: 262 LKLIQLVIRKNFKDLYYVSVNTEASGSQQIVLYTDSKDELNLIMKEVKDENHRMEEMKIQ 321
L+++ V+RK+F DL Y+ N ++S S+ IV+YTDS + +MKE KDE R+ E KIQ
Sbjct: 119 LRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSDSDKENLMKEAKDERKRLAERKIQ 178
Query: 322 TAVGFRHVIDLLSSEQKLIVGHNCLLDIAHVYNKFIRPLPETPEEFVASVNKCFPNIVDT 381
+A+GFR VIDLL+SE+KLIVGHNC LDIAHVY+KF+ PLP T E+FVAS+N FP IVDT
Sbjct: 179 SAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVDT 238
Query: 382 KILLNTNSMLQGRMRGSRKSLASAFSLFCPQIAAGSGNTEPGSPSHVKVDIEVDDSRSST 441
KILLN N ML RM+ S SL+SAFS CPQI S +++ V +D+E+D+ R S
Sbjct: 239 KILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCSN 298
Query: 442 WNPGGKHEAGYDAFMTGCVFTQLCSDLGVDFKLHESSKELALNEKLQKYVNHLYISWMHG 501
WN GGKHEAGYDAFMTGC+F Q C+ LG DFK H + A NEKL+KY+N LY+SW G
Sbjct: 299 WNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTRG 358
Query: 502 DIIDLSTGDKVADSSPSYSLKRRYPQILFENIVIMWGFPSKLKANEIRNCISLVFGSSSV 561
DIIDL TG AD+ R + +ENIV++W FP KLKA I+ CI FGS+SV
Sbjct: 359 DIIDLRTGHSNADN-------WRVSKFKYENIVLIWNFPRKLKARGIKECICKAFGSASV 411
Query: 562 VSIYHLDSTAVFVQFSKTNLVSDFLLLKDTLERSDGPILVLHPLAKLLEGGNTCAANYDA 621
S+YH+D +AVFV F + LV DFL LK LE SDGP+ VLHPL+K+LEGGNT AA+Y+A
Sbjct: 412 TSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYEA 471
Query: 622 YREICGSTLSESLFADQAKAVGITWKTK 649
Y+EIC S +SE +F+DQA+ VG+ +T+
Sbjct: 472 YKEICSSHVSEVMFSDQAETVGVKSRTR 499
>AT3G25430.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr3:9221204-9223700
FORWARD LENGTH=618
Length = 618
Score = 218 bits (555), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 161/603 (26%), Positives = 285/603 (47%), Gaps = 58/603 (9%)
Query: 28 FPLKTVTTANFEPSLVDLRRHVRSSDFVAIDLEMTGITSAPWRESLEFDRSDVRYLKVRD 87
+ +K V +NF +L ++R + SSDF+A+ L+ TG +A W D YLK +
Sbjct: 24 WSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQTSYLKAKY 83
Query: 88 SATRFAVVQFGVCPFRWDPSNNSFLAYPYNFYVFPRQELAGFGPCNEFLCQTTSMDFLAK 147
+A R+ ++QF +CPF S +PYNF++FPR EL P F CQ + + +A+
Sbjct: 84 AAERYQILQFALCPFSLQGSK--LTVHPYNFHLFPRDELKCGMPSYSFSCQASRLTAMAR 141
Query: 148 YQFDFNVCIHEGISYLSREQEREAIRRLNSTYDSERPDICKLKDVRDIPLLSMADTLFTA 207
FDFN+CI+EGISYLSR QE S + SE P + V P ++ADT+F
Sbjct: 142 EGFDFNICIYEGISYLSRAQESA------SKFLSENPILADSVTVSSSP-ATVADTVFVG 194
Query: 208 RMKSKFSEWRDGLLHEQNQEDRIQKISEDSKEQFQVMFFKLQPALRLNGFTSHQLKLIQL 267
R++S+ WR + ++ +S + + + L ++ + Q++LI
Sbjct: 195 RIRSRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQLILE 254
Query: 268 VIRKNFKDLYYVSVNTEASGSQQI-VLYTDSKDELNLIMKEVKDENHRMEEMKIQTAVGF 326
++ + D+ + V +++ G+Q + ++ SK++ +L +E+KD +E+ + + GF
Sbjct: 255 MLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKD----LEKEENRRVRGF 310
Query: 327 RHVIDLLSSEQKLIVGHNCLLDIAHVYNKFIRPLPETPEEFVASVNKCFPNIVDTKILLN 386
R V+D +SS QK +V N L D ++ KF+ PLP ++F +S++ FPN+VD +
Sbjct: 311 REVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMK 370
Query: 387 TNSMLQGRMRGSRKSLASAFSLFCPQIAAGSGNTEPGSPSHVKVDIEVDDSRSSTWNPGG 446
S L + +++S F P VD+EV + G
Sbjct: 371 EISPLSN-ISNLPAAMSSLNRFFAP------------------VDVEVANQGCPVKLDEG 411
Query: 447 KHEAGYDAFMTGCVFTQLCSDLGVDFKLHESSKELALNEKLQKYVNHLYISWMHGDIIDL 506
G +A M +F +LC+ D +S NE Q + H + +
Sbjct: 412 HQSHGQNAVMISQLFAKLCTIQKSDLSTIQS------NEDFQALASD-----EHANSVTS 460
Query: 507 STGDKVADSSPSYSLKRRYPQILFENIVIMWGFPSKLKANEIRNCISL---VFGSSSVVS 563
+ + ++ +S R ++ EN+V +WG K+ A +++N + VF
Sbjct: 461 CSKNAGDENVKVWSKNSR--RVSSENLVFIWGLGKKMTAAKLKNVLQKSHPVFARE--FD 516
Query: 564 IYHLDSTAVFVQFSKTNLVSDFLLLKDTLERSDGPILVLHPLAKLLEGGNTCAANYDAYR 623
+ ++D ++ + F ++ FL + E+ DG + + +A+ L G A Y+ Y+
Sbjct: 517 VKYIDRSSAILVFWESGPSETFLSAVNNEEQLDGSLREM--VAEGLRG-----AGYETYK 569
Query: 624 EIC 626
C
Sbjct: 570 RAC 572