Miyakogusa Predicted Gene
- Lj0g3v0301929.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0301929.1 Non Chatacterized Hit- tr|K0K9P2|K0K9P2_9PSEU
Putative deacetylase OS=Saccharothrix espanaensis DSM
,40.28,8e-18,Hist_deacetyl,Histone deacetylase domain; HISTONE
DEACETYLASE-RELATED,NULL; HISTONE DEACETYLASE,Hist,CUFF.20289.1
(137 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08460.1 | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase... 183 3e-47
AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of t... 57 4e-09
AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:2456... 52 8e-08
AT5G61060.1 | Symbols: HDA05, HDA5, ATHDA5 | histone deacetylase... 52 9e-08
AT4G38130.1 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 |... 48 2e-06
AT4G38130.2 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19 | histone ... 47 4e-06
AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | h... 47 5e-06
AT3G18520.1 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |... 46 7e-06
AT3G18520.2 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |... 46 8e-06
>AT1G08460.1 | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase 8
| chr1:2672527-2674469 FORWARD LENGTH=377
Length = 377
Score = 183 bits (464), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 113/163 (69%), Gaps = 37/163 (22%)
Query: 9 GTGFLNNAGLAVQLALDSG-CKKVAVIDIDVHYGNGTAEGFYRSDKVITISLHMNHGSWG 67
G FLNNA LAV+LAL+SG C +VAVIDIDVHYGNGTAEGFY SDKV+T+SLHMNHGSWG
Sbjct: 153 GYCFLNNAALAVKLALNSGSCSRVAVIDIDVHYGNGTAEGFYTSDKVLTVSLHMNHGSWG 212
Query: 68 PSHPQSGS-----------------------------------VPSIQKFGPDVIVLVII 92
SHPQ GS VP++++FGPD++VLV +
Sbjct: 213 SSHPQKGSIDELGEDVGLGYNLNVPLPNGTGDRGYEYAMNELVVPAVRRFGPDMVVLV-V 271
Query: 93 GQDSSAFDPNGRQCLTMEGYREIGRIVHGLAAKHSDGRLLIVQ 135
GQDSSAFDPNGRQ LTM GYR IG+I+ G+A +HS GRLL+VQ
Sbjct: 272 GQDSSAFDPNGRQSLTMNGYRRIGQIMRGVAEEHSHGRLLMVQ 314
>AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of the
RPD3/HDA1 superfamily 18 | chr5:24571297-24574372
REVERSE LENGTH=682
Length = 682
Score = 57.0 bits (136), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 45/158 (28%)
Query: 8 MGTGFLNNAGLAVQLAL----DSGCKKVAVIDIDVHYGNGTAEGFYRSDKVITISLHM-N 62
MG NN +A L D KK+ ++D D+H+GNGT + F++ +V+ S+H +
Sbjct: 198 MGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIHHGNGTQKMFWKDSRVLIFSVHRHD 257
Query: 63 HGSW--------------GPSH--------PQSGS-------------VPSIQKFGPDVI 87
HGS+ GP Q G +P ++F PD+I
Sbjct: 258 HGSFYPFGDDGDFNMVGEGPGEGFNINVPWEQGGCGDADYLAVWNHILIPVTKEFKPDII 317
Query: 88 VLVIIGQDSSAFDPNGRQCLTMEGY----REIGRIVHG 121
+L G D++ DP G C+T GY +++ HG
Sbjct: 318 LLS-AGFDAAIGDPLGGCCVTPYGYSVMLKKLMEFAHG 354
>AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 |
chr5:24567137-24570917 REVERSE LENGTH=664
Length = 664
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 41/145 (28%)
Query: 8 MGTGFLNNAGLAVQLAL----DSGCKKVAVIDIDVHYGNGTAEGFYRSDKVITISLHM-N 62
MG NN +A L D G KK+ ++D DVH+GNGT + F++ +V+ S+H
Sbjct: 165 MGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHE 224
Query: 63 HGSWGPS-----------HPQSGS------------------------VPSIQKFGPDVI 87
+G + P+ P G +P ++F PDVI
Sbjct: 225 YGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDVI 284
Query: 88 VLVIIGQDSSAFDPNGRQCLTMEGY 112
L G D++ DP G C+T GY
Sbjct: 285 FLS-AGFDAAINDPLGGCCVTPYGY 308
>AT5G61060.1 | Symbols: HDA05, HDA5, ATHDA5 | histone deacetylase 5
| chr5:24567137-24570917 REVERSE LENGTH=660
Length = 660
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 41/145 (28%)
Query: 8 MGTGFLNNAGLAVQLAL----DSGCKKVAVIDIDVHYGNGTAEGFYRSDKVITISLHM-N 62
MG NN +A L D G KK+ ++D DVH+GNGT + F++ +V+ S+H
Sbjct: 165 MGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHE 224
Query: 63 HGSWGPS-----------HPQSGS------------------------VPSIQKFGPDVI 87
+G + P+ P G +P ++F PDVI
Sbjct: 225 YGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDVI 284
Query: 88 VLVIIGQDSSAFDPNGRQCLTMEGY 112
L G D++ DP G C+T GY
Sbjct: 285 FLS-AGFDAAINDPLGGCCVTPYGY 308
>AT4G38130.1 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 |
histone deacetylase 1 | chr4:17896493-17899057 REVERSE
LENGTH=501
Length = 501
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 9 GTGFLNNAGLAVQLALDSGCKKVAVIDIDVHYGNGTAEGFYRSDKVITISLHMNHGSWGP 68
G ++N+ LA+ L L ++V +DID+H+G+G E FY +D+V+T+S H +G
Sbjct: 157 GFCYVNDIVLAI-LELLKQHERVLYVDIDIHHGDGVEEAFYATDRVMTVSFH----KFGD 211
Query: 69 SHPQSGSVPSI 79
P +G + I
Sbjct: 212 YFPGTGHIQDI 222
>AT4G38130.2 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19 | histone
deacetylase 1 | chr4:17896663-17899057 REVERSE
LENGTH=469
Length = 469
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 9 GTGFLNNAGLAVQLALDSGCKKVAVIDIDVHYGNGTAEGFYRSDKVITISLHMNHGSWGP 68
G ++N+ LA+ L L ++V +DID+H+G+G E FY +D+V+T+S H +G
Sbjct: 157 GFCYVNDIVLAI-LELLKQHERVLYVDIDIHHGDGVEEAFYATDRVMTVSFH----KFGD 211
Query: 69 SHPQSGSVPSI 79
P +G + I
Sbjct: 212 YFPGTGHIQDI 222
>AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 |
histone deacetylase 6 | chr5:25315834-25318227 REVERSE
LENGTH=471
Length = 471
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 9 GTGFLNNAGLAVQLALDSGCKKVAVIDIDVHYGNGTAEGFYRSDKVITISLH 60
G ++N+ L + L L K+V IDIDVH+G+G E FY +D+V+T+S H
Sbjct: 161 GFCYVNDIVLGI-LELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFH 211
>AT3G18520.1 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |
chr3:6361605-6365367 FORWARD LENGTH=552
Length = 552
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 43/163 (26%)
Query: 8 MGTGFLNNAGLAVQLALDSGCKKVAVIDIDVHYGNGTAEGFYRSDKVITISLHMNHGSWG 67
MG NNA +A +A +G KKV ++D DVH+GNGT E F ++ V+ ISLH + G G
Sbjct: 284 MGFCLHNNAAVAALVAQAAGAKKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEG--G 341
Query: 68 PSHPQSGS------------------------------------VPSIQKFGPDVIVLVI 91
+P +G+ +P F PD V++
Sbjct: 342 NFYPGTGAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPD-FVIIS 400
Query: 92 IGQDSSAFDPNGRQCLTMEGYREIGRIVHGLAAKHSDGRLLIV 134
G D++ DP G +T GY + +++ L G++L++
Sbjct: 401 AGFDAARGDPLGCCDVTPAGYSRMTQMLGDLCG----GKMLVI 439
>AT3G18520.2 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |
chr3:6361605-6365399 FORWARD LENGTH=564
Length = 564
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 43/163 (26%)
Query: 8 MGTGFLNNAGLAVQLALDSGCKKVAVIDIDVHYGNGTAEGFYRSDKVITISLHMNHGSWG 67
MG NNA +A +A +G KKV ++D DVH+GNGT E F ++ V+ ISLH + G G
Sbjct: 284 MGFCLHNNAAVAALVAQAAGAKKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEG--G 341
Query: 68 PSHPQSGS------------------------------------VPSIQKFGPDVIVLVI 91
+P +G+ +P F PD V++
Sbjct: 342 NFYPGTGAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPD-FVIIS 400
Query: 92 IGQDSSAFDPNGRQCLTMEGYREIGRIVHGLAAKHSDGRLLIV 134
G D++ DP G +T GY + +++ L G++L++
Sbjct: 401 AGFDAARGDPLGCCDVTPAGYSRMTQMLGDLCG----GKMLVI 439