Miyakogusa Predicted Gene

Lj0g3v0301919.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0301919.2 Non Chatacterized Hit- tr|E1Z483|E1Z483_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,41.23,8e-18,BINDING,NULL; FAMILY NOT NAMED,NULL; no
description,Armadillo-like helical; DUF383,FAM203
N-terminal,CUFF.20297.2
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14300.2 | Symbols:  | ARM repeat superfamily protein | chr1:...   226   5e-60
AT1G14300.1 | Symbols:  | ARM repeat superfamily protein | chr1:...   225   7e-60

>AT1G14300.2 | Symbols:  | ARM repeat superfamily protein |
           chr1:4882654-4884686 REVERSE LENGTH=377
          Length = 377

 Score =  226 bits (575), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 105/137 (76%), Positives = 124/137 (90%)

Query: 1   MLLVNLTQLDAGIASLLQIEDDKVRGLYVMKLVRSFCRTTHESDDDAFEHVGSILVNISK 60
           MLLVNLTQLD G++SLLQI+D+K+ GL++MKLVRSFCR++ E+ DD FEHVGSILVNISK
Sbjct: 108 MLLVNLTQLDDGVSSLLQIDDEKMHGLHIMKLVRSFCRSSGETADDQFEHVGSILVNISK 167

Query: 61  QRAGRELLLDPKRGLLKQIIRQFDSNSSLRKKGVSGTIRNCCFEAENQLQNLLLVSEFLW 120
              GR+LLL+PKR LLKQIIRQFDS + LRKKGV+GTIRNCCFEA+NQLQN+LL+SEFLW
Sbjct: 168 TEDGRKLLLEPKRRLLKQIIRQFDSTNQLRKKGVAGTIRNCCFEAKNQLQNILLISEFLW 227

Query: 121 PALLLPVAGNKIYSDVD 137
           PALLLPVAG+K YS+ D
Sbjct: 228 PALLLPVAGSKTYSEQD 244


>AT1G14300.1 | Symbols:  | ARM repeat superfamily protein |
           chr1:4882654-4884686 REVERSE LENGTH=339
          Length = 339

 Score =  225 bits (574), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 105/137 (76%), Positives = 124/137 (90%)

Query: 1   MLLVNLTQLDAGIASLLQIEDDKVRGLYVMKLVRSFCRTTHESDDDAFEHVGSILVNISK 60
           MLLVNLTQLD G++SLLQI+D+K+ GL++MKLVRSFCR++ E+ DD FEHVGSILVNISK
Sbjct: 108 MLLVNLTQLDDGVSSLLQIDDEKMHGLHIMKLVRSFCRSSGETADDQFEHVGSILVNISK 167

Query: 61  QRAGRELLLDPKRGLLKQIIRQFDSNSSLRKKGVSGTIRNCCFEAENQLQNLLLVSEFLW 120
              GR+LLL+PKR LLKQIIRQFDS + LRKKGV+GTIRNCCFEA+NQLQN+LL+SEFLW
Sbjct: 168 TEDGRKLLLEPKRRLLKQIIRQFDSTNQLRKKGVAGTIRNCCFEAKNQLQNILLISEFLW 227

Query: 121 PALLLPVAGNKIYSDVD 137
           PALLLPVAG+K YS+ D
Sbjct: 228 PALLLPVAGSKTYSEQD 244