Miyakogusa Predicted Gene

Lj0g3v0301709.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0301709.1 tr|K0BV36|K0BV36_LOTJA SIE3 OS=Lotus japonicus
GN=SIE3 PE=2 SV=1,98.45,0,ZF_RING_2,Zinc finger, RING-type; CTLH,CTLH,
C-terminal LisH motif; seg,NULL; C-terminal to LisH mot,CUFF.20270.1
         (380 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37880.1 | Symbols:  | LisH/CRA/RING-U-box domains-containing...   446   e-125
AT2G22690.2 | Symbols:  | zinc ion binding | chr2:9649820-965096...   409   e-114
AT2G22690.1 | Symbols:  | zinc ion binding | chr2:9649820-965096...   409   e-114
AT5G09630.1 | Symbols:  | LisH/CRA/RING-U-box domains-containing...   322   4e-88
AT3G55070.1 | Symbols:  | LisH/CRA/RING-U-box domains-containing...   114   9e-26
AT3G55070.2 | Symbols:  | LisH/CRA/RING-U-box domains-containing...    90   2e-18

>AT4G37880.1 | Symbols:  | LisH/CRA/RING-U-box domains-containing
           protein | chr4:17810183-17811349 FORWARD LENGTH=388
          Length = 388

 Score =  446 bits (1146), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/390 (54%), Positives = 286/390 (73%), Gaps = 12/390 (3%)

Query: 1   MELSTIKDAFDRVXXXXXXXXXXXXEVIDQIRQEIENVLDTMQSVNNTDH-VLDHKTVLN 59
           MEL +IKDAFDRV            E++  + QEI+  L  ++   ++D  +LDH+++L 
Sbjct: 1   MELKSIKDAFDRVATKQKLSYSKTNEIVHMLSQEIDKALSILEETPSSDTMLLDHRSILA 60

Query: 60  ELKASLLQTAPLSQMEGTQKELNVALSKYGKLLEKNFNTDISKAYR-NIDIDVHTLNQII 118
           ++K   ++ AP++Q+E T+KEL+ AL+KY K+LEK  N DISKAYR N++ D H +NQII
Sbjct: 61  DVKKVFMEIAPITQLEATEKELHAALTKYPKVLEKQLNPDISKAYRHNVEFDTHIVNQII 120

Query: 119 ANHFYRQGLFEIGDHFLSVVGEPESAAVMKSPFLEMYQILEAMKNQDLEPALKWATSNSD 178
           AN FYRQG+F+IGD F++  GE E +   +  F+EMY+ILEAMK +DLEPAL WA SNSD
Sbjct: 121 ANFFYRQGMFDIGDCFVAETGESECST--RQSFVEMYRILEAMKRRDLEPALNWAVSNSD 178

Query: 179 KLAQSGSDIVLKLHSMQFVKILQNGSRDEALHYARTYLSPFASSHIADIQKLMGSLLWTG 238
           KL ++ SD+ +KLHS+ F++I +  +  EA+ YAR +++ FA S + +IQKLM SLLW  
Sbjct: 179 KLKEARSDLEMKLHSLHFLEIARGKNSKEAIDYARKHIATFADSCLPEIQKLMCSLLWNR 238

Query: 239 KLDSSPYHALLSPSNWDRLAEELKRQFCNLLGQSYNSPLSVTISAGVQALPPLLKFMNVM 298
           KLD SPY   LSP+ W+   +EL RQ+CNLLG+S  SPLS+T++AG QALP LLK+MNV+
Sbjct: 239 KLDKSPYSEFLSPALWNNAVKELTRQYCNLLGESSESPLSITVTAGTQALPVLLKYMNVV 298

Query: 299 VGKK-------QQLPVPVELDSELQFHSIFVCPVSKEQATEDNPPMLMSCGHVLCKQSIS 351
           +  K       +QLPV  +L  E QFHS+FVCPVSKEQ+++DNPPM+MSCGHVLCKQ+I+
Sbjct: 299 MANKKLDWQTMEQLPVDAQLSEEFQFHSVFVCPVSKEQSSDDNPPMMMSCGHVLCKQTIN 358

Query: 352 KMSKNGSK-LFKCPYCPFDVDAALCKQLYF 380
           KMSKNGSK  FKCPYCP DVD + C+QL+F
Sbjct: 359 KMSKNGSKSSFKCPYCPTDVDISRCRQLHF 388


>AT2G22690.2 | Symbols:  | zinc ion binding | chr2:9649820-9650965
           REVERSE LENGTH=381
          Length = 381

 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/388 (50%), Positives = 271/388 (69%), Gaps = 15/388 (3%)

Query: 1   MELSTIKDAFDRVXXXXXXXXXXXXEVIDQIRQEIENVLDTMQSVNNTDHVLDHKTVLNE 60
           MEL  +KDAFDRV            EV+D++ QEI+  L T+Q  N       H++V+ +
Sbjct: 1   MELKNVKDAFDRVTKKQKLCYSKTHEVVDKMSQEIDKALKTIQEDN-------HESVVAD 53

Query: 61  LKASLLQTAPLSQMEGTQKELNVALSKYGKLLEKNFNTDISKAYRNIDIDVHTLNQIIAN 120
           LK +  + AP++ +E +QKE+N  L+KY K L+K  N DIS AYRN+  D HT++QI+A 
Sbjct: 54  LKKTFEEIAPINLLEASQKEINGVLTKYPKALDKTLNPDISTAYRNVKFDTHTVHQILAQ 113

Query: 121 HFYRQGLFEIGDHFLSVVGEPESAAVMKSPFLEMYQILEAMKNQDLEPALKWATSNSDKL 180
            FYRQG++++GD F+S  GE +  + +   F+EM  ILEAMK +DL PALKW  SNSDKL
Sbjct: 114 FFYRQGMYDVGDCFISETGEVKPESSVTKAFMEMNMILEAMKERDLGPALKWVASNSDKL 173

Query: 181 AQSGSDIVLKLHSMQFVKILQNGSRDEALHYARTYLSPFA--SSHIADIQKLMGSLLWTG 238
            ++ SD+ LKLHS+ F++I ++ + +EA++YAR + + ++  S    +IQKLM SLLW  
Sbjct: 174 KEAKSDLELKLHSLHFLEIAKDKTSEEAINYARKHFATYSADSCCFPEIQKLMCSLLWIR 233

Query: 239 KLDSSPYHALLSPSNWDRLAEELKRQFCNLLGQSYNSPLSVTISAGVQALPPLLKFMNVM 298
            L+ SPY   LSP  W   A+EL RQ+C LLG+S  SPLSVT++AG Q LP  LK++NV+
Sbjct: 234 NLNKSPYSEFLSPVLWTNAAKELTRQYCILLGESPESPLSVTVAAGSQVLPTFLKYLNVL 293

Query: 299 VGKK------QQLPVPVELDSELQFHSIFVCPVSKEQATEDNPPMLMSCGHVLCKQSISK 352
             K+      +QL VPVEL  E +F+S+FVCPVSKE ++EDNPPM ++CGHVLCKQSI++
Sbjct: 294 PEKRKEWQTMEQLLVPVELSEEYRFYSVFVCPVSKEHSSEDNPPMRLACGHVLCKQSINR 353

Query: 353 MSKNGSKLFKCPYCPFDVDAALCKQLYF 380
           MS+NGS+ FKCPYCP D+DA+ CKQLYF
Sbjct: 354 MSRNGSRSFKCPYCPTDIDASQCKQLYF 381


>AT2G22690.1 | Symbols:  | zinc ion binding | chr2:9649820-9650965
           REVERSE LENGTH=381
          Length = 381

 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/388 (50%), Positives = 271/388 (69%), Gaps = 15/388 (3%)

Query: 1   MELSTIKDAFDRVXXXXXXXXXXXXEVIDQIRQEIENVLDTMQSVNNTDHVLDHKTVLNE 60
           MEL  +KDAFDRV            EV+D++ QEI+  L T+Q  N       H++V+ +
Sbjct: 1   MELKNVKDAFDRVTKKQKLCYSKTHEVVDKMSQEIDKALKTIQEDN-------HESVVAD 53

Query: 61  LKASLLQTAPLSQMEGTQKELNVALSKYGKLLEKNFNTDISKAYRNIDIDVHTLNQIIAN 120
           LK +  + AP++ +E +QKE+N  L+KY K L+K  N DIS AYRN+  D HT++QI+A 
Sbjct: 54  LKKTFEEIAPINLLEASQKEINGVLTKYPKALDKTLNPDISTAYRNVKFDTHTVHQILAQ 113

Query: 121 HFYRQGLFEIGDHFLSVVGEPESAAVMKSPFLEMYQILEAMKNQDLEPALKWATSNSDKL 180
            FYRQG++++GD F+S  GE +  + +   F+EM  ILEAMK +DL PALKW  SNSDKL
Sbjct: 114 FFYRQGMYDVGDCFISETGEVKPESSVTKAFMEMNMILEAMKERDLGPALKWVASNSDKL 173

Query: 181 AQSGSDIVLKLHSMQFVKILQNGSRDEALHYARTYLSPFA--SSHIADIQKLMGSLLWTG 238
            ++ SD+ LKLHS+ F++I ++ + +EA++YAR + + ++  S    +IQKLM SLLW  
Sbjct: 174 KEAKSDLELKLHSLHFLEIAKDKTSEEAINYARKHFATYSADSCCFPEIQKLMCSLLWIR 233

Query: 239 KLDSSPYHALLSPSNWDRLAEELKRQFCNLLGQSYNSPLSVTISAGVQALPPLLKFMNVM 298
            L+ SPY   LSP  W   A+EL RQ+C LLG+S  SPLSVT++AG Q LP  LK++NV+
Sbjct: 234 NLNKSPYSEFLSPVLWTNAAKELTRQYCILLGESPESPLSVTVAAGSQVLPTFLKYLNVL 293

Query: 299 VGKK------QQLPVPVELDSELQFHSIFVCPVSKEQATEDNPPMLMSCGHVLCKQSISK 352
             K+      +QL VPVEL  E +F+S+FVCPVSKE ++EDNPPM ++CGHVLCKQSI++
Sbjct: 294 PEKRKEWQTMEQLLVPVELSEEYRFYSVFVCPVSKEHSSEDNPPMRLACGHVLCKQSINR 353

Query: 353 MSKNGSKLFKCPYCPFDVDAALCKQLYF 380
           MS+NGS+ FKCPYCP D+DA+ CKQLYF
Sbjct: 354 MSRNGSRSFKCPYCPTDIDASQCKQLYF 381


>AT5G09630.1 | Symbols:  | LisH/CRA/RING-U-box domains-containing
           protein | chr5:2986016-2987176 REVERSE LENGTH=386
          Length = 386

 Score =  322 bits (824), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 164/383 (42%), Positives = 252/383 (65%), Gaps = 11/383 (2%)

Query: 5   TIKDAFDRVXXXXXXXXXXXXEVIDQIRQEIENVLDTMQSVNNTDHVLDHKTVLNELKAS 64
           T++DAFDRV            +VID +   I++ L  +Q + N D V + ++VL EL+  
Sbjct: 8   TVRDAFDRVSKKQKLYHSVTQDVIDLVCDGIQDTLTRIQ-LGNDDGV-EPESVLTELRRK 65

Query: 65  LLQTAPLSQMEGTQKELNVALSKYGKLLEKNFNTDISKAYRNIDIDVHTLNQIIANHFYR 124
           L    P+ Q++ + KE   +LSK  KLLE +++ DIS A  ++D D++ +N+I+ +H YR
Sbjct: 66  LDALLPIIQLQKSHKETKWSLSKLVKLLEVSYHPDISLACFSVDFDINLVNKILIHHCYR 125

Query: 125 QGLFEIGDHFLSVVGEPESAAVMKSPFLEMYQILEAMKNQDLEPALKWATSNSDKLAQSG 184
           +GLF++GD  +   G  E   V +S FLE +QI++++K +++EPA++W  +N  KL Q  
Sbjct: 126 EGLFDVGDCLVKEAGREEETEV-RSQFLEFHQIVDSLKLRNIEPAMRWIFANRGKLKQKS 184

Query: 185 SDIVLKLHSMQFVKILQNGSRDEALHYARTYLSPFASSHIADIQKLMGSLLWTGKLDSSP 244
           S +  KL S+++  IL+ G  D+AL YART+ + +   H  +IQKL+  LLW G  + SP
Sbjct: 185 SKLEFKLLSLKYCDILREGKSDDALEYARTHFTQYPL-HFKEIQKLITCLLWIGNFEKSP 243

Query: 245 YHALLSPSNWDRLAEELKRQFCNLLGQSYNSPLSVTISAGVQALPPLLKFMNVMVGKKQ- 303
           Y  ++SPS WD++ +EL  ++ +LL Q  NSPL V +SAG ++LP LLK +++M   KQ 
Sbjct: 244 YAEIVSPSCWDKVTKELIMEYHHLLDQPINSPLKVALSAGYESLPSLLKLVHLMALTKQE 303

Query: 304 -----QLPVPVELDSELQFHSIFVCPVSKEQATEDNPPMLMSCGHVLCKQSISKMSKNGS 358
                QLPVP+EL +E +FHS FVCPVS++Q++E+NPPM + CGHV+ KQS+ ++SKN +
Sbjct: 304 WQAMKQLPVPLELGNEYKFHSAFVCPVSRDQSSEENPPMQLPCGHVISKQSMMRLSKNCA 363

Query: 359 -KLFKCPYCPFDVDAALCKQLYF 380
            + FKCPYCP +  A+ C+QLYF
Sbjct: 364 FRTFKCPYCPAETLASACRQLYF 386


>AT3G55070.1 | Symbols:  | LisH/CRA/RING-U-box domains-containing
           protein | chr3:20408377-20410887 FORWARD LENGTH=418
          Length = 418

 Score =  114 bits (286), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 131/268 (48%), Gaps = 28/268 (10%)

Query: 114 LNQIIANHFYRQGLFEIGDHFLSVVGEPESAAVMK----SPFLEMYQILEAMKNQDLEPA 169
           L +I+ ++  R   FE            ES+ +M       F E  ++++A+KN+++  A
Sbjct: 145 LKRILVDYMLRMSYFETATKL------SESSNIMDLVDIDIFREAKKVIDALKNREVASA 198

Query: 170 LKWATSNSDKLAQSGSDIVLKLHSMQFVKILQ---NGSRDEALHYARTYLSPFASSHIAD 226
           L W   N  +L +S S    +L   +F+++++     S  +A+ YAR +L+ + ++H+ +
Sbjct: 199 LTWCADNKTRLKKSKSKFEFQLRLQEFIELVRVDTAESYKKAIQYARKHLASWGTTHMKE 258

Query: 227 IQKLMGSLLWTGKLDSSPYHALLSPSNWDRLAEELKRQFCNLLGQSYNSPLSVTISAGVQ 286
           +Q ++ +L +    + S Y  L     WD L ++ K++FC L G +    L++ + AG+ 
Sbjct: 259 LQHVLATLAFKSTTECSKYKVLFELRQWDVLVDQFKQEFCKLYGMTMEPLLNIYLQAGLS 318

Query: 287 ALPPLLKFMNVMVG---------KKQQLPVPVELDSELQFHSIFVCPVSKEQATEDNPPM 337
           AL                     +K  LP+P       Q HS  VC +SKE    +NPP 
Sbjct: 319 ALKTPYGLEEGCTKEDPLSQENFRKLALPLPF----SKQHHSKLVCYISKELMDTENPPQ 374

Query: 338 LMSCGHVLCKQSISKMS-KNGSKLFKCP 364
           ++  G+V   +++ +M+ KNG K+  CP
Sbjct: 375 VLPNGYVYSTKALKEMAEKNGGKI-TCP 401


>AT3G55070.2 | Symbols:  | LisH/CRA/RING-U-box domains-containing
           protein | chr3:20408377-20410297 FORWARD LENGTH=323
          Length = 323

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 94/184 (51%), Gaps = 13/184 (7%)

Query: 114 LNQIIANHFYRQGLFEIGDHFLSVVGEPESAAVMK----SPFLEMYQILEAMKNQDLEPA 169
           L +I+ ++  R   FE            ES+ +M       F E  ++++A+KN+++  A
Sbjct: 145 LKRILVDYMLRMSYFETATKL------SESSNIMDLVDIDIFREAKKVIDALKNREVASA 198

Query: 170 LKWATSNSDKLAQSGSDIVLKLHSMQFVKILQ---NGSRDEALHYARTYLSPFASSHIAD 226
           L W   N  +L +S S    +L   +F+++++     S  +A+ YAR +L+ + ++H+ +
Sbjct: 199 LTWCADNKTRLKKSKSKFEFQLRLQEFIELVRVDTAESYKKAIQYARKHLASWGTTHMKE 258

Query: 227 IQKLMGSLLWTGKLDSSPYHALLSPSNWDRLAEELKRQFCNLLGQSYNSPLSVTISAGVQ 286
           +Q ++ +L +    + S Y  L     WD L ++ K++FC L G +    L++ + AG+ 
Sbjct: 259 LQHVLATLAFKSTTECSKYKVLFELRQWDVLVDQFKQEFCKLYGMTMEPLLNIYLQAGLS 318

Query: 287 ALPP 290
           AL  
Sbjct: 319 ALKT 322