Miyakogusa Predicted Gene
- Lj0g3v0301409.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0301409.2 tr|G7J9L8|G7J9L8_MEDTR Mediator of RNA polymerase
II transcription subunit OS=Medicago truncatula GN,82.98,0,seg,NULL;
MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13,NULL; FAMILY
NOT NAMED,NULL; Med13_,CUFF.20383.2
(1591 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G55325.2 | Symbols: GCT | RNA polymerase II transcription med... 1646 0.0
AT1G55325.1 | Symbols: GCT | RNA polymerase II transcription med... 1547 0.0
>AT1G55325.2 | Symbols: GCT | RNA polymerase II transcription
mediators | chr1:20637594-20647714 FORWARD LENGTH=2001
Length = 2001
Score = 1646 bits (4263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 887/1614 (54%), Positives = 1090/1614 (67%), Gaps = 91/1614 (5%)
Query: 1 MGPSLPGSCSFVHCAGNVDSTEDPWSEINGTRTQXXXXXXXXXXXXXXXXXXXXXXXXXF 60
+GPSL GS F+H AG+ D ++ +G + +
Sbjct: 359 IGPSLAGSSLFMHWAGDFDCLGASENKSDGFYEKNGYNSSGSSRNSSISSTSSASSGSGW 418
Query: 61 KTTGPS-ELEADADSLTCRQSTISSADQLENDGPKLGSKRSRMAMTESLSTATNVPVQDA 119
+ T + +L+ADADSLTCRQS ++ D D K+GSKR R M ES
Sbjct: 419 RMTSRTGDLDADADSLTCRQSGLTCND----DRLKMGSKRPRTGMAES------------ 462
Query: 120 YMSDFGSMEVNNSAITRVGNESVGSYWDWDDEDRGMEMDIQALLSXXXXXXXXXXNDVLP 179
FG + + N I + +DR + MDI+ALLS ND LP
Sbjct: 463 ----FGQVGIENDQIGWDWDADDDD------DDREVGMDIKALLSEFGDFGDFFENDALP 512
Query: 180 FGEPPGTAESQTLMFSAPDCGDVNSSPVGAMMDVSDQMLLPVGFSSFECFNPPPPSVMEE 239
FGEPPGTAES L+F PD DV SSPV MMDVSDQ++LPVGFSSFE FNP PP +++E
Sbjct: 513 FGEPPGTAESHVLVF-PPDSADVGSSPVD-MMDVSDQIVLPVGFSSFESFNPVPP-IIDE 569
Query: 240 CLDKSQDNLNNSMSSGPTNQTQMLYTKEFDHIMKAEAMMTFAPEFGAVETPTSELSTTLF 299
CL KSQ+ L++S++S P+NQ + T EFDH++KAEAMMTFAPE+GAVE P SE+S+T F
Sbjct: 570 CLIKSQEVLHSSITSVPSNQMSISSTGEFDHLLKAEAMMTFAPEYGAVEAPMSEISSTFF 629
Query: 300 RSPYFPKSRKADXXXXXXXXXLYGAAPPSSPYVEGSESKNGVVFNTKTGSGKHDASMSLH 359
+SPY PKS K + +YGA PP++ + + + ++F +K+ G + H
Sbjct: 630 KSPYLPKSHKVESSNSRTSNYVYGATPPTT---DSDGAGDMILFGSKSCIGNNAGRTLYH 686
Query: 360 SKNYYTFVQSRKDLNDKKPVTCNDNSIAKSEGIGPPQFSNIGSNAVVKSVLRKMTEGTNE 419
S+ +YT V+ RK +DK P +DNS K EG+ S + VK V K T+G +
Sbjct: 687 SREHYTQVEGRKGRHDKLPTVISDNSSTK-EGVSQSIHSKHSAANAVKVVQGKKTDGISA 745
Query: 420 TEHSLLSAKTLLATDISCAMLQASMCRSRHVLLSSSNLIPVGLNRSSGVSFVNHLPIDPS 479
+LLS+KTLLATD+ M QA MCR RH++ SS + PV L R SG F+N L +PS
Sbjct: 746 VVSTLLSSKTLLATDVGSVMFQAFMCRMRHIITSSKHSSPVSLTRLSGNFFLNQLSNEPS 805
Query: 480 TNTDNISGKYEVKKKENIPVRXXXXXXXXXXXXHLNAPVGVWRTVGASKVVKPSNSPNME 539
T TDNIS + E+ KK+ IP R H++APVGVWRTV K KP++SPN+E
Sbjct: 806 TLTDNISARNEIYKKD-IPTRIAGDFDGGMLDSHMSAPVGVWRTVSVPKTAKPASSPNIE 864
Query: 540 IGPSFSHNSFNEEGILSYGQRKPLQELLDGIAFLVQQAISFVDLALDADCGDGPYGLLAL 599
G S H+SF+E+ +LSYGQR+PLQ+LLDGIA LVQQA SFVDLALD+DCGDGPYG LAL
Sbjct: 865 AGSSLPHSSFSEDSLLSYGQRQPLQDLLDGIALLVQQATSFVDLALDSDCGDGPYGWLAL 924
Query: 600 QEHWRRGFCCGPSMVPAGCGGTLSSSHSLDIAGLELVDPLSSDVHASTLINLLQSDIKMA 659
+E WRR CGPS AGCGGTL+S HSLDIAG++LVDPLS++V S++I LLQSDIK A
Sbjct: 925 EELWRRELSCGPSAGHAGCGGTLASCHSLDIAGVKLVDPLSAEVFPSSVITLLQSDIKTA 984
Query: 660 LKSAFSNLEGPLSVTDWCQGRNQSVDIGSIADCISAESSISECRXXXXXXXXXXXXXGIK 719
LKSAF +GPLSVTDWC+GRNQS D GSI++ +AES++SE
Sbjct: 985 LKSAFGQSDGPLSVTDWCKGRNQSGDGGSISEGFTAESALSE------------------ 1026
Query: 720 VSSMMDNSKVDENSQRRCGQDMCNSESEQQPCSRLKPTLVALPFPSILVGYQDDWLKTSA 779
VS+ +D K DE +Q QD+ +SE L+PTL LP P+ILVGYQDDWLK S
Sbjct: 1027 VSNAIDGGKGDETAQ---SQDIYSSE-------LLRPTLFVLPSPAILVGYQDDWLKIST 1076
Query: 780 NCLQHWEKAPLEPYALQKPITYHVICPDIDPLTSAAADFFQQLGTVYETCKLGTHSPQGL 839
N L HWEKAP EPYAL K I Y V+CPDIDPLT AA DFFQQLGTVYETC+LGTH PQ L
Sbjct: 1077 NSLTHWEKAPFEPYALPKSINYAVVCPDIDPLTCAATDFFQQLGTVYETCRLGTHLPQSL 1136
Query: 840 GNQMEIESAKSSSCGFVLLDCPQSMKIESSNASLVGSVSDYFLSLSNGWDLTSYLKSLSK 899
GNQME + + SS GFVLLDCPQSMKIES+N SL+GS+SDYFLSLSNGW++ SYLKSLSK
Sbjct: 1137 GNQMEKDVGRLSSSGFVLLDCPQSMKIESNNTSLLGSLSDYFLSLSNGWNVNSYLKSLSK 1196
Query: 900 ALRALNLSSSFSTNPSEGSNCSCLVIYVVCPFPDPTAILQTXXXXXXXXXXXXXXXDRER 959
AL+ L L S TN EGS C+V+Y+VCPFPDP+A+L+T DR+R
Sbjct: 1197 ALKGLKLGSGLYTNQKEGSGSPCVVVYIVCPFPDPSAVLRT-IVESSIALGSVIQSDRDR 1255
Query: 960 RSSLHSQVVKALSGLATVDEASASNILVLSGFSIPKLVLQIVTVDAIFRVTSPSVSELVI 1019
RS L+SQV +A S VDEAS S+I VLSGFS+PKLVLQ+V+VD+IFR+TSPS +ELVI
Sbjct: 1256 RSILNSQVARAFSSSTAVDEASISHIPVLSGFSVPKLVLQVVSVDSIFRITSPSFNELVI 1315
Query: 1020 LKETAFTVYNKARRISRGISND-FSQLAFSSRSQSVLTQMPSPISGMWKDCVGPRM-GHS 1077
LK+TAF+VYNKARRISRG+ ND F + SRS S LT M S ISG+WKDC G RM G +
Sbjct: 1316 LKDTAFSVYNKARRISRGMPNDAFFSSSLPSRSSSALTPMNS-ISGIWKDCGGSRMTGST 1374
Query: 1078 LPREGDIDASLRPSNWD--NSWQPTRTGVLSCDPSRSGDILLHDEIRYMFEPLFILAEPG 1135
PR+G+ID SLR S WD SWQ R+G LSCDP+R+GD L+DEI Y+FEPLFIL+EPG
Sbjct: 1375 HPRDGEIDVSLRTSGWDTSTSWQIPRSGGLSCDPNRNGDFYLNDEIFYLFEPLFILSEPG 1434
Query: 1136 SPEHGIS-VIGSPTSESSKALTDDS--SANYVQXXXXXXXXXXXXXXXXXXXXQKTHPSL 1192
S E G+S S SESSK + +D + K PSL
Sbjct: 1435 SVERGVSPTFTSLGSESSKPIPEDGGRGSGPGMNSMEGITSGSSSQGDVSQLEGKAIPSL 1494
Query: 1193 HCCYGWTEDWRWLVCIWTDSRGELLDCNIFPFGGISSRQDTKGLQCLFVQVLQQGCLILQ 1252
HCCYGWTEDWRWLV IWTD+RGELLD +IFPFGGISSRQDTKGLQCLFVQVLQQGC ILQ
Sbjct: 1495 HCCYGWTEDWRWLVSIWTDARGELLDTHIFPFGGISSRQDTKGLQCLFVQVLQQGCQILQ 1554
Query: 1253 SC---DSGLAKPRDFVIARIGGFYELEYLEWQKALYSVGGSEMKRWPLQLRKSLSDGVSA 1309
+C D+G KPRDFVI RIG F+ELEY EWQKA+YS GG E+K+WP+QLR+S G++
Sbjct: 1555 ACSSPDNGSFKPRDFVITRIGNFFELEYQEWQKAIYSAGGPEIKKWPIQLRRSAPSGIAT 1614
Query: 1310 TSNGSSLQQSDMSLIPERTXXXXXXXXXXXHAKPTAYMKANLGQPAARKQLMGGHSMVDN 1369
SNGSSLQQ D+SLI ER H+K + ++K ++GQ A RKQ+MGG ++
Sbjct: 1615 NSNGSSLQQQDLSLIQERA--SSTSTLYSSHSKQSTFVKGSMGQSAGRKQIMGGQTISGT 1672
Query: 1370 SRGLLHWAQSISFVAVSMDHTLKLVLPSDSSSPG------------YVEGFTPVKSLGST 1417
RGL W SISF ++S+DH+L VLP++ S G Y+EGFTPVKSLGST
Sbjct: 1673 PRGLFQWVHSISFASISLDHSLHFVLPAELVSAGGGQSSTGMSSVNYIEGFTPVKSLGST 1732
Query: 1418 SSAYILIPSPSMRFLPPTALQLPTCLTAESPPLAHLLHSKGSALPLSTGFVVSKAVPSMR 1477
+ +Y++IPSP+MRFL P+ LQLPTCLTAESPPLAHLLHSKG A+PLSTGFVVSKAVPSMR
Sbjct: 1733 AFSYMMIPSPNMRFLHPSPLQLPTCLTAESPPLAHLLHSKGYAIPLSTGFVVSKAVPSMR 1792
Query: 1478 KDHRSNLKEEWPSVLSVNLIDYYGGSNIQQEKFIRGINKQGGRGLSWDAKDFEVQTXXXX 1537
KD R N+KEEWPSVLSV+LIDYYGG + +K ++GI KQGG + + +DFEV++
Sbjct: 1793 KDSRINVKEEWPSVLSVSLIDYYGGYDNAHDKILQGIVKQGGG--TKETRDFEVESHLIL 1850
Query: 1538 XXXXXXXXXXXWMTVSPAYLERRTALPFHCDMVIRLRRLLHFADKELFKQSEKS 1591
WMTVSPAYL+RRTALPFHCDMV+RLRRLLHFADKE+ + +K+
Sbjct: 1851 ESIAAELHALSWMTVSPAYLDRRTALPFHCDMVLRLRRLLHFADKEVSRIPDKT 1904
>AT1G55325.1 | Symbols: GCT | RNA polymerase II transcription
mediators | chr1:20637594-20646875 FORWARD LENGTH=1921
Length = 1921
Score = 1547 bits (4005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 845/1568 (53%), Positives = 1037/1568 (66%), Gaps = 117/1568 (7%)
Query: 62 TTGPSELEADADSLTCRQSTISSADQLENDGPKLGSKRSRMAMTESLSTATNVPVQDAYM 121
T+ +L+ADADSLTCRQS ++ D D K+GSKR R M ES
Sbjct: 431 TSRTGDLDADADSLTCRQSGLTCND----DRLKMGSKRPRTGMAES-------------- 472
Query: 122 SDFGSMEVNNSAITRVGNESVGSYWDWDDEDRGMEMDIQALLSXXXXXXXXXXNDVLPFG 181
FG + + N I + +DR + MDI+ALLS ND LPFG
Sbjct: 473 --FGQVGIENDQIGWDWDADDDD------DDREVGMDIKALLSEFGDFGDFFENDALPFG 524
Query: 182 EPPGTAESQTLMFSAPDCGDVNSSPVGAMMDVSDQMLLPVGFSSFECFNPPPPSVMEECL 241
EPPGTAES L+F PD DV SSPV MMDVSDQ++LPVGFSSFE FNP PP +++ECL
Sbjct: 525 EPPGTAESHVLVF-PPDSADVGSSPVD-MMDVSDQIVLPVGFSSFESFNPVPP-IIDECL 581
Query: 242 DKSQDNLNNSMSSGPTNQTQMLYTKEFDHIMKAEAMMTFAPEFGAVETPTSELSTTLFRS 301
KSQ+ L++S++S P+NQ + T EFDH++KAEAMMTFAPE+GAVE P SE+S+T F+S
Sbjct: 582 IKSQEVLHSSITSVPSNQMSISSTGEFDHLLKAEAMMTFAPEYGAVEAPMSEISSTFFKS 641
Query: 302 PYFPKSRKADXXXXXXXXXLYGAAPPSSPYVEGSESKNGVVFNTKTGSGKHDASMSLHSK 361
PY PKS K + +YGA PP++ + + + ++F +K+ G + HS+
Sbjct: 642 PYLPKSHKVESSNSRTSNYVYGATPPTT---DSDGAGDMILFGSKSCIGNNAGRTLYHSR 698
Query: 362 NYYTFVQSRKDLNDKKPVTCNDNSIAKSEGIGPPQFSNIGSNAVVKSVLRKMTEGTNETE 421
+YT V+ RK +DK P +DNS K EG+ S + VK V K T+G +
Sbjct: 699 EHYTQVEGRKGRHDKLPTVISDNSSTK-EGVSQSIHSKHSAANAVKVVQGKKTDGISAVV 757
Query: 422 HSLLSAKTLLATDISCAMLQASMCRSRHVLLSSSNLIPVGLNRSSGVSFVNHLPIDPSTN 481
+LLS+KTLLATD+ M QA MCR RH++ SS + PV L R SG F+N L +PST
Sbjct: 758 STLLSSKTLLATDVGSVMFQAFMCRMRHIITSSKHSSPVSLTRLSGNFFLNQLSNEPSTL 817
Query: 482 TDNISGKYEVKKKENIPVRXXXXXXXXXXXXHLNAPVGVWRTVGASKVVKPSNSPNMEIG 541
TDNIS + E+ KK+ IP R H++APVGVWRTV K KP++SPN+E G
Sbjct: 818 TDNISARNEIYKKD-IPTRIAGDFDGGMLDSHMSAPVGVWRTVSVPKTAKPASSPNIEAG 876
Query: 542 PSFSHNSFNEEGILSYGQRKPLQELLDGIAFLVQQAISFVDLALDADCGDGPYGLLALQE 601
S H+SF+E+ +LSYGQR+PLQ+LLDGIA LVQQA SFVDLALD+DCGDGPYG LAL+E
Sbjct: 877 SSLPHSSFSEDSLLSYGQRQPLQDLLDGIALLVQQATSFVDLALDSDCGDGPYGWLALEE 936
Query: 602 HWRRGFCCGPSMVPAGCGGTLSSSHSLDIAGLELVDPLSSDVHASTLINLLQSDIKMALK 661
WRR CGPS AGCGGTL+S HSLDIAG++LVDPLS++V S++I LLQSDIK ALK
Sbjct: 937 LWRRELSCGPSAGHAGCGGTLASCHSLDIAGVKLVDPLSAEVFPSSVITLLQSDIKTALK 996
Query: 662 SAFSNLEGPLSVTDWCQGRNQSVDIGSIADCISAESSISECRXXXXXXXXXXXXXGIK-- 719
SAF +GPLSVTDWC+GRNQS D GSI++ +AES++SE K
Sbjct: 997 SAFGQSDGPLSVTDWCKGRNQSGDGGSISEGFTAESALSEVNGVNISDDFIIDKYFGKQA 1056
Query: 720 VSSMMDNSKVDENSQRRCGQDMCNSESEQQPCSRLKPTLVALPFPSILVGYQDDWLKTSA 779
VS+ +D K DE +Q QD+ +SE L+PTL LP P+ILVGYQDDWLK S
Sbjct: 1057 VSNAIDGGKGDETAQ---SQDIYSSE-------LLRPTLFVLPSPAILVGYQDDWLKIST 1106
Query: 780 NCLQHWEKAPLEPYALQKPITYHVICPDIDPLTSAAADFFQQLGTVYETCK--------- 830
N L HWEKAP EPYAL K I Y V+CPDIDPLT AA DFFQQLGT T
Sbjct: 1107 NSLTHWEKAPFEPYALPKSINYAVVCPDIDPLTCAATDFFQQLGTGESTSLSFVKEVMLK 1166
Query: 831 -----LGTHSPQGLGNQMEIESAKSSSCGFVLLDCPQSMKIESSNASLVGSVSDYFLSLS 885
LGTH PQ LGNQME + + SS GFVLLDCPQSMKIES+N SL+GS+SDYFLSLS
Sbjct: 1167 HDRNWLGTHLPQSLGNQMEKDVGRLSSSGFVLLDCPQSMKIESNNTSLLGSLSDYFLSLS 1226
Query: 886 NGWDLTSYLKSLSKALRALNLSSSFSTNPSEGSNCSCLVIYVVCPFPDPTAILQTXXXXX 945
NGW++ SYLKSLSKAL+ L L S TN EGS C+V+Y+VCPFPDP+A+L+T
Sbjct: 1227 NGWNVNSYLKSLSKALKGLKLGSGLYTNQKEGSGSPCVVVYIVCPFPDPSAVLRT-IVES 1285
Query: 946 XXXXXXXXXXDRERRSSLHSQVVKALSGLATVDEASASNILVLSGFSIPKLVLQIVTVDA 1005
DR+RRS L+SQV +A S VDEAS S+I VLSGFS+PKLVLQ+V+VD+
Sbjct: 1286 SIALGSVIQSDRDRRSILNSQVARAFSSSTAVDEASISHIPVLSGFSVPKLVLQVVSVDS 1345
Query: 1006 IFRVTSPSVSELVILKETAFTVYNKARRISRGISND-FSQLAFSSRSQSVLTQMPSPISG 1064
IFR+TSPS +ELVILK+TAF+VYNKARRISRG+ ND F + SRS S LT M S ISG
Sbjct: 1346 IFRITSPSFNELVILKDTAFSVYNKARRISRGMPNDAFFSSSLPSRSSSALTPMNS-ISG 1404
Query: 1065 MWKDCVGPRM-GHSLPREGDIDASLRPSNWD--NSWQPTRTGVLSCDPSRSGDILLHDEI 1121
+WKDC G RM G + PR+G+ID SLR S WD SWQ R+G LSCDP+R+GD L+DEI
Sbjct: 1405 IWKDCGGSRMTGSTHPRDGEIDVSLRTSGWDTSTSWQIPRSGGLSCDPNRNGDFYLNDEI 1464
Query: 1122 RYMFEPLFILAEPGSPEHGIS-VIGSPTSESSKALTDDS--SANYVQXXXXXXXXXXXXX 1178
Y+FEPLFIL+EPGS E G+S S SESSK + +D +
Sbjct: 1465 FYLFEPLFILSEPGSVERGVSPTFTSLGSESSKPIPEDGGRGSGPGMNSMEGITSGSSSQ 1524
Query: 1179 XXXXXXXQKTHPSLHCCYGWTEDWRWLVCIWTDSRGELLDCNIFPFGGISSRQDTKGLQC 1238
K PSLHCCYGWTEDWRWLV IWTD+R
Sbjct: 1525 GDVSQLEGKAIPSLHCCYGWTEDWRWLVSIWTDAR------------------------- 1559
Query: 1239 LFVQVLQQGCLILQSC---DSGLAKPRDFVIARIGGFYELEYLEWQKALYSVGGSEMKRW 1295
VLQQGC ILQ+C D+G KPRDFVI RIG F+ELEY EWQKA+YS GG E+K+W
Sbjct: 1560 ----VLQQGCQILQACSSPDNGSFKPRDFVITRIGNFFELEYQEWQKAIYSAGGPEIKKW 1615
Query: 1296 PLQLRKSLSDGVSATSNGSSLQQSDMSLIPERTXXXXXXXXXXXHAKPTAYMKANLGQPA 1355
P+QLR+S G++ SNGSSLQQ D+SLI ER H+K + ++K ++GQ A
Sbjct: 1616 PIQLRRSAPSGIATNSNGSSLQQQDLSLIQERA--SSTSTLYSSHSKQSTFVKGSMGQSA 1673
Query: 1356 ARKQLMGGHSMVDNSRGLLHWAQSISFVAVSMDHTLKLVLPSDSSSPG------------ 1403
RKQ+MGG ++ RGL W SISF ++S+DH+L VLP++ S G
Sbjct: 1674 GRKQIMGGQTISGTPRGLFQWVHSISFASISLDHSLHFVLPAELVSAGGGQSSTGMSSVN 1733
Query: 1404 YVEGFTPVKSLGSTSSAYILIPSPSMRFLPPTALQLPTCLTAESPPLAHLLHSKGSALPL 1463
Y+EGFTPVKSLGST+ +Y++IPSP+MRFL P+ LQLPTCLTAESPPLAHLLHSKG A+PL
Sbjct: 1734 YIEGFTPVKSLGSTAFSYMMIPSPNMRFLHPSPLQLPTCLTAESPPLAHLLHSKGYAIPL 1793
Query: 1464 STGFVVSKAVPSMRKDHRSNLKEEWPSVLSVNLIDYYGGSNIQQEKFIRGINKQGGRGLS 1523
STGFVVSKAVPSMRKD R N+KEEWPSVLSV+LIDYYGG + +K ++GI KQGG +
Sbjct: 1794 STGFVVSKAVPSMRKDSRINVKEEWPSVLSVSLIDYYGGYDNAHDKILQGIVKQGGG--T 1851
Query: 1524 WDAKDFEVQTXXXXXXXXXXXXXXXWMTVSPAYLERRTALPFHCDMVIRLRRLLHFADKE 1583
+ +DFEV++ WMTVSPAYL+RRTALPFHCDMV+RLRRLLHFADKE
Sbjct: 1852 KETRDFEVESHLILESIAAELHALSWMTVSPAYLDRRTALPFHCDMVLRLRRLLHFADKE 1911
Query: 1584 LFKQSEKS 1591
+ + +K+
Sbjct: 1912 VSRIPDKT 1919