Miyakogusa Predicted Gene

Lj0g3v0300899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0300899.1 tr|I0Z284|I0Z284_9CHLO Photosystem I reaction
centre subunit VI OS=Coccomyxa subellipsoidea C-169 PE,45.95,1e-18,no
description,NULL; PSI_PsaH,Photosystem I PsaH, reaction centre subunit
VI; seg,NULL,CUFF.20342.1
         (144 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52230.1 | Symbols: PSAH2, PSAH-2, PSI-H | photosystem I subu...   171   1e-43
AT3G16140.1 | Symbols: PSAH-1 | photosystem I subunit H-1 | chr3...   169   9e-43

>AT1G52230.1 | Symbols: PSAH2, PSAH-2, PSI-H | photosystem I subunit
           H2 | chr1:19454902-19455508 FORWARD LENGTH=145
          Length = 145

 Score =  171 bits (433), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 97/126 (76%), Gaps = 1/126 (0%)

Query: 1   MASLATLAAVQP-AAINGLAGSSLNGTKLSFKSSRQSIKSKNFRNGAVVAKYGDKSVYFD 59
           MAS AT+AAVQP AA+ GL GSSL G KL  K SRQS K+K+ R GAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 60  LEDIGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYYSA 119
           LED+GNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 120 TASGDI 125
            ++GD+
Sbjct: 121 NSTGDV 126


>AT3G16140.1 | Symbols: PSAH-1 | photosystem I subunit H-1 |
           chr3:5468670-5469415 REVERSE LENGTH=145
          Length = 145

 Score =  169 bits (427), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 87/126 (69%), Positives = 96/126 (76%), Gaps = 1/126 (0%)

Query: 1   MASLATLAAVQP-AAINGLAGSSLNGTKLSFKSSRQSIKSKNFRNGAVVAKYGDKSVYFD 59
           MASLAT+AAV+P AAI GL GSSL G KLS K SR S K K+ R   VVAKYGDKSVYFD
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 60  LEDIGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYYSA 119
           LED+GNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 120 TASGDI 125
           T++G++
Sbjct: 121 TSTGEV 126