Miyakogusa Predicted Gene

Lj0g3v0300879.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0300879.1 Non Chatacterized Hit- tr|A3A9U0|A3A9U0_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,29.03,9e-19,seg,NULL,CUFF.20223.1
         (288 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32680.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    72   6e-13

>AT4G32680.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G52343.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:15763462-15765039 REVERSE LENGTH=282
          Length = 282

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 134/296 (45%), Gaps = 62/296 (20%)

Query: 16  ILEQGSDRIAFITGRVQTLXXXXXXXXXXXXXXXXXXXXXNTALXXXXXTGSYPHSNSPL 75
           IL++GSDR+AFITG++  +                       +        S P +  P 
Sbjct: 13  ILDRGSDRLAFITGQINGVPSPPPSDSTSS-----------LSQSDLQTDQSLPDTIPPR 61

Query: 76  CAVAEPDEDSISLLQN--LDAAVETLIQSLPTVENEISTAPCSEIEPE-----LVENPQA 128
             + +  E + +  Q+   DAA+      L  V++ I  +    ++P+     L E   +
Sbjct: 62  DQILKAQEIAFTSHQDNISDAAM------LENVDHIIHQSREEPLQPQRHAETLAEASAS 115

Query: 129 APPDS---------SSLENSHYQNLQDHEQRF--------TIIPSDISSAINSSRGTRFF 171
            P D+         SS++N    +L    Q F         I P  I +AI++S   R F
Sbjct: 116 DPRDTTTIQPPPTTSSVQNPSVVDL-GASQAFIPVVSFVNAITPKHIGAAIDASEYARMF 174

Query: 172 CSIIMAMWVIAAYGGLFSLLGIHLVKSVVIGFRPIYIVLLTNWSVVAARLFAGRQRGFGR 231
            ++ +A+ VI ++ G FS LG       ++ FRP+++++LT+ ++V  R+          
Sbjct: 175 TALAIALVVILSHLG-FSSLG------NIVSFRPVFLLVLTDATIVLGRVL--------- 218

Query: 232 LSRRGSDE----TLASSGDWGAQLARTLEIGLLLQSVLDAVFMDCAVYAIVLVCGL 283
           LS RG       T+ S      Q+   LE  ++++ ++DA+ MD ++YA++L+CGL
Sbjct: 219 LSHRGDSSSASGTVMSGQGIVDQVGNALETVMMVKKIMDALLMDFSLYAVILICGL 274