Miyakogusa Predicted Gene

Lj0g3v0300669.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0300669.1 Non Chatacterized Hit- tr|I3SC00|I3SC00_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,97.93,0,RNase_PH,Exoribonuclease, phosphorolytic domain 1;
Ribosomal protein S5 domain 2-like,Ribosomal prot,CUFF.20212.1
         (194 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27490.1 | Symbols:  | 3'-5'-exoribonuclease family protein |...   268   2e-72
AT3G61620.2 | Symbols: RRP41 | 3'-5'-exoribonuclease family prot...    81   5e-16
AT3G61620.1 | Symbols: RRP41 | 3'-5'-exoribonuclease family prot...    81   5e-16
AT3G46210.6 | Symbols:  | Ribosomal protein S5 domain 2-like sup...    69   3e-12
AT3G46210.5 | Symbols:  | Ribosomal protein S5 domain 2-like sup...    69   3e-12
AT3G46210.4 | Symbols:  | Ribosomal protein S5 domain 2-like sup...    69   3e-12
AT3G46210.3 | Symbols:  | Ribosomal protein S5 domain 2-like sup...    69   3e-12
AT3G46210.2 | Symbols:  | Ribosomal protein S5 domain 2-like sup...    69   3e-12
AT3G46210.1 | Symbols:  | Ribosomal protein S5 domain 2-like sup...    69   3e-12

>AT4G27490.1 | Symbols:  | 3'-5'-exoribonuclease family protein |
           chr4:13739961-13741647 FORWARD LENGTH=256
          Length = 256

 Score =  268 bits (685), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 123/166 (74%), Positives = 141/166 (84%)

Query: 29  DWVRPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRESKKAMLYSDVGR 88
           DW RPDGRGFHQCRPA  +T            EFGNTKVIVSVFGPRESKKAM+YSDVGR
Sbjct: 31  DWSRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGR 90

Query: 89  LNCNVSYTTFATPVRGQGSDHKDYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDL 148
           LNCNVSYT FA+P  GQG+DHK+YS+ML KAL G I++E+FPKTTVDVFALVLESGGSDL
Sbjct: 91  LNCNVSYTNFASPTLGQGTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGSDL 150

Query: 149 PVVISCASLALADAGIMMYDLVASVSVSCLSKNLVIDPISEEENCQ 194
            V+ISCASLALADAGIMMYDL+ +VSVSC+ K+L+IDP++EEE C+
Sbjct: 151 SVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCE 196


>AT3G61620.2 | Symbols: RRP41 | 3'-5'-exoribonuclease family protein
           | chr3:22801382-22802910 REVERSE LENGTH=241
          Length = 241

 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 5/165 (3%)

Query: 26  IKEDWVRPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRE--SKKAMLY 83
           +  + +R DGR F++ R                  E GNTKVI +V+GPRE  +K     
Sbjct: 4   VNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKK 63

Query: 84  SDVGRLNCNVSYTTFAT-PVRGQGSDHK--DYSAMLDKALGGAIILESFPKTTVDVFALV 140
           +D   + C  S   F+T   R Q  D +  + S ++ + +   I+ E  P + +D+F  V
Sbjct: 64  NDHAVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123

Query: 141 LESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLSKNLVID 185
           L++ G      I+ A+LALADAGI M DL  S S   L+   ++D
Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLD 168


>AT3G61620.1 | Symbols: RRP41 | 3'-5'-exoribonuclease family protein
           | chr3:22801382-22802910 REVERSE LENGTH=241
          Length = 241

 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 5/165 (3%)

Query: 26  IKEDWVRPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRE--SKKAMLY 83
           +  + +R DGR F++ R                  E GNTKVI +V+GPRE  +K     
Sbjct: 4   VNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKK 63

Query: 84  SDVGRLNCNVSYTTFAT-PVRGQGSDHK--DYSAMLDKALGGAIILESFPKTTVDVFALV 140
           +D   + C  S   F+T   R Q  D +  + S ++ + +   I+ E  P + +D+F  V
Sbjct: 64  NDHAVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQV 123

Query: 141 LESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLSKNLVID 185
           L++ G      I+ A+LALADAGI M DL  S S   L+   ++D
Sbjct: 124 LQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLD 168


>AT3G46210.6 | Symbols:  | Ribosomal protein S5 domain 2-like
           superfamily protein | chr3:16976960-16978489 REVERSE
           LENGTH=239
          Length = 239

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 10/163 (6%)

Query: 32  RPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRESKKAMLYSDVGRLNC 91
           R DGR  +Q RP                   G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 58

Query: 92  NVSYTTFATPVRGQ-GSDHKDYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDLPV 150
              +     P  GQ G   K+Y  +L + +    +L   P TT  V   V+   GS LP 
Sbjct: 59  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 118

Query: 151 VISCASLALADAGIMMYDLVASVSVSCLSKN--LVIDPISEEE 191
            I+ A  AL DAGI M  L  ++   CL++N  LV+DP   EE
Sbjct: 119 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160


>AT3G46210.5 | Symbols:  | Ribosomal protein S5 domain 2-like
           superfamily protein | chr3:16976960-16978489 REVERSE
           LENGTH=239
          Length = 239

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 10/163 (6%)

Query: 32  RPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRESKKAMLYSDVGRLNC 91
           R DGR  +Q RP                   G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 58

Query: 92  NVSYTTFATPVRGQ-GSDHKDYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDLPV 150
              +     P  GQ G   K+Y  +L + +    +L   P TT  V   V+   GS LP 
Sbjct: 59  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 118

Query: 151 VISCASLALADAGIMMYDLVASVSVSCLSKN--LVIDPISEEE 191
            I+ A  AL DAGI M  L  ++   CL++N  LV+DP   EE
Sbjct: 119 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160


>AT3G46210.4 | Symbols:  | Ribosomal protein S5 domain 2-like
           superfamily protein | chr3:16976960-16978489 REVERSE
           LENGTH=239
          Length = 239

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 10/163 (6%)

Query: 32  RPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRESKKAMLYSDVGRLNC 91
           R DGR  +Q RP                   G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 58

Query: 92  NVSYTTFATPVRGQ-GSDHKDYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDLPV 150
              +     P  GQ G   K+Y  +L + +    +L   P TT  V   V+   GS LP 
Sbjct: 59  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 118

Query: 151 VISCASLALADAGIMMYDLVASVSVSCLSKN--LVIDPISEEE 191
            I+ A  AL DAGI M  L  ++   CL++N  LV+DP   EE
Sbjct: 119 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160


>AT3G46210.3 | Symbols:  | Ribosomal protein S5 domain 2-like
           superfamily protein | chr3:16976960-16978489 REVERSE
           LENGTH=239
          Length = 239

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 10/163 (6%)

Query: 32  RPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRESKKAMLYSDVGRLNC 91
           R DGR  +Q RP                   G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 58

Query: 92  NVSYTTFATPVRGQ-GSDHKDYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDLPV 150
              +     P  GQ G   K+Y  +L + +    +L   P TT  V   V+   GS LP 
Sbjct: 59  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 118

Query: 151 VISCASLALADAGIMMYDLVASVSVSCLSKN--LVIDPISEEE 191
            I+ A  AL DAGI M  L  ++   CL++N  LV+DP   EE
Sbjct: 119 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160


>AT3G46210.2 | Symbols:  | Ribosomal protein S5 domain 2-like
           superfamily protein | chr3:16976960-16978489 REVERSE
           LENGTH=239
          Length = 239

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 10/163 (6%)

Query: 32  RPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRESKKAMLYSDVGRLNC 91
           R DGR  +Q RP                   G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 58

Query: 92  NVSYTTFATPVRGQ-GSDHKDYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDLPV 150
              +     P  GQ G   K+Y  +L + +    +L   P TT  V   V+   GS LP 
Sbjct: 59  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 118

Query: 151 VISCASLALADAGIMMYDLVASVSVSCLSKN--LVIDPISEEE 191
            I+ A  AL DAGI M  L  ++   CL++N  LV+DP   EE
Sbjct: 119 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160


>AT3G46210.1 | Symbols:  | Ribosomal protein S5 domain 2-like
           superfamily protein | chr3:16976960-16978489 REVERSE
           LENGTH=239
          Length = 239

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 10/163 (6%)

Query: 32  RPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRESKKAMLYSDVGRLNC 91
           R DGR  +Q RP                   G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 58

Query: 92  NVSYTTFATPVRGQ-GSDHKDYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDLPV 150
              +     P  GQ G   K+Y  +L + +    +L   P TT  V   V+   GS LP 
Sbjct: 59  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 118

Query: 151 VISCASLALADAGIMMYDLVASVSVSCLSKN--LVIDPISEEE 191
            I+ A  AL DAGI M  L  ++   CL++N  LV+DP   EE
Sbjct: 119 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160