Miyakogusa Predicted Gene

Lj0g3v0300389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0300389.1 Non Chatacterized Hit- tr|I1JEW7|I1JEW7_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,67.69,6e-18,seg,NULL,CUFF.20182.1
         (87 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G15780.1 | Symbols:  | Cupredoxin superfamily protein | chr2:...    52   6e-08
AT2G15770.1 | Symbols:  | Cupredoxin superfamily protein | chr2:...    49   5e-07

>AT2G15780.1 | Symbols:  | Cupredoxin superfamily protein |
           chr2:6873666-6874701 REVERSE LENGTH=257
          Length = 257

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 28/32 (87%)

Query: 55  PKQILVGGSEHWHFGYNYSDWAIKSAPFYLND 86
           P++I+VGG + W +G+NY+DWA K+APF+LND
Sbjct: 141 PRKIIVGGDKEWTYGFNYADWASKTAPFFLND 172


>AT2G15770.1 | Symbols:  | Cupredoxin superfamily protein |
           chr2:6871257-6872245 REVERSE LENGTH=301
          Length = 301

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 26/33 (78%)

Query: 55  PKQILVGGSEHWHFGYNYSDWAIKSAPFYLNDT 87
           PK+I+VGGS+ W  G +Y DWA K+APFY+ND 
Sbjct: 143 PKKIIVGGSDGWKKGLDYKDWASKNAPFYVNDV 175