Miyakogusa Predicted Gene

Lj0g3v0299659.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0299659.2 tr|Q2PQS5|Q2PQS5_9BRAS SPIKE-like protein 1
(Fragment) OS=Capsella rubella GN=SPIKE1 PE=2
SV=1,86.11,0.00000000009,SPIKE-1,NULL; DEDICATOR OF CYTOKINESIS
(DOCK),Dedicator of cytokinesis,CUFF.20160.2
         (70 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16340.1 | Symbols: SPK1 | guanyl-nucleotide exchange factors...   127   2e-30

>AT4G16340.1 | Symbols: SPK1 | guanyl-nucleotide exchange
           factors;GTPase binding;GTP binding |
           chr4:9228773-9241060 REVERSE LENGTH=1830
          Length = 1830

 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/70 (81%), Positives = 64/70 (91%)

Query: 1   MPGRDPSDRNYLSSVLIQELFVTWDHEDLSLRAKAARILVVLLCKHEFDVRYQKPEDKLY 60
           MPGRDPSDRNYLSS+LIQELF++ DH++L LRAK ARILV+LLCKHEFD RYQK EDKLY
Sbjct: 896 MPGRDPSDRNYLSSILIQELFLSLDHDELPLRAKGARILVILLCKHEFDARYQKAEDKLY 955

Query: 61  IAQLYFPLIG 70
           IAQLYFP +G
Sbjct: 956 IAQLYFPFVG 965