Miyakogusa Predicted Gene

Lj0g3v0299499.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0299499.1 Non Chatacterized Hit- tr|I1N1F6|I1N1F6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,60.56,2e-17,
,CUFF.20115.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23850.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    55   1e-08
AT1G23830.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    53   8e-08
AT1G23840.1 | Symbols:  | unknown protein; LOCATED IN: endomembr...    45   1e-05

>AT1G23850.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G23840.1); Has 47 Blast hits to 40 proteins in
           5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:8425981-8427045 REVERSE
           LENGTH=354
          Length = 354

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 6/66 (9%)

Query: 72  LLMMYLEWSAIWNMSIVISVLD------GVYGIGAFRVSYFFSRGNQKTGLLLMLVFFIF 125
           LL M+ +WSA WNM +V+SVL+       +YG  A  +S  + +G++K GL +MLVF +F
Sbjct: 223 LLAMFSKWSAGWNMGLVVSVLEEEENGQSIYGTDALTLSSNYGKGHEKRGLQVMLVFLVF 282

Query: 126 GFCLRL 131
              +R+
Sbjct: 283 AIAMRM 288


>AT1G23830.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 12 plant structures; EXPRESSED
           DURING: 9 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT1G23840.1);
           Has 57 Blast hits to 52 proteins in 7 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:8423003-8424040 REVERSE LENGTH=345
          Length = 345

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 6/66 (9%)

Query: 72  LLMMYLEWSAIWNMSIVISVLD------GVYGIGAFRVSYFFSRGNQKTGLLLMLVFFIF 125
           L   Y +WS+ WNM +V+SVL+      G+YG  A  +S ++ +G++K  L LML+F +F
Sbjct: 219 LTAKYSKWSSGWNMGLVVSVLEEDEDGQGIYGGDALSLSGWYRKGHEKRDLWLMLMFLVF 278

Query: 126 GFCLRL 131
           G   R+
Sbjct: 279 GLATRM 284


>AT1G23840.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane
           system; EXPRESSED IN: 18 plant structures; EXPRESSED
           DURING: 12 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT1G23850.1);
           Has 53 Blast hits to 48 proteins in 5 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:8424321-8425337 REVERSE LENGTH=338
          Length = 338

 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 6/60 (10%)

Query: 78  EWSAIWNMSIVISVLD------GVYGIGAFRVSYFFSRGNQKTGLLLMLVFFIFGFCLRL 131
           +WSA WN+S+V+SVL+      G+YG  A  +S ++ RG +K    +MLVF +     R+
Sbjct: 215 KWSAGWNISMVVSVLEEEEDSKGIYGSSALSLSAWYLRGQEKRDFWMMLVFLVGALVTRM 274