Miyakogusa Predicted Gene
- Lj0g3v0298949.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0298949.1 Non Chatacterized Hit- tr|I1JJ86|I1JJ86_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,84.91,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; DEAD,DNA/RNA
helicase, DEAD/DEAH box type,CUFF.20074.1
(728 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 865 0.0
AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosph... 326 3e-89
AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 325 6e-89
AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 243 5e-64
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosph... 238 2e-62
AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosph... 235 7e-62
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase... 231 1e-60
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosph... 230 3e-60
AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosph... 216 4e-56
AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 204 2e-52
AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 201 2e-51
AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides,... 200 3e-51
AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 191 1e-48
AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 | ch... 191 1e-48
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosph... 191 1e-48
AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 189 6e-48
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 180 4e-45
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 180 4e-45
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 180 4e-45
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 180 4e-45
AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |... 177 3e-44
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 176 6e-44
AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |... 174 2e-43
AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosph... 173 3e-43
AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosph... 172 7e-43
AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |... 172 1e-42
AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosph... 171 2e-42
AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 170 3e-42
AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 169 7e-42
AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 169 7e-42
AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosph... 168 1e-41
AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosph... 166 4e-41
AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family prote... 164 1e-40
AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 164 1e-40
AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 164 1e-40
AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosph... 163 3e-40
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosph... 160 2e-39
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 160 3e-39
AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosph... 156 4e-38
AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 156 5e-38
AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 156 5e-38
AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 153 3e-37
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 153 3e-37
AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 153 3e-37
AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWAR... 153 5e-37
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family ... 150 3e-36
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA ... 150 4e-36
AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 149 5e-36
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA... 149 8e-36
AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 147 3e-35
AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosph... 143 5e-34
AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | c... 142 7e-34
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosph... 142 9e-34
AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosph... 139 8e-33
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor ... 139 8e-33
AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 138 2e-32
AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 137 2e-32
AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 137 2e-32
AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 135 9e-32
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 135 1e-31
AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 134 2e-31
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 134 2e-31
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 134 3e-31
AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 132 9e-31
AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiatio... 132 1e-30
AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosph... 130 4e-30
AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside triph... 130 4e-30
AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosph... 125 1e-28
AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosph... 125 1e-28
AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 121 2e-27
AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleos... 119 7e-27
AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 119 7e-27
AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family prot... 118 1e-26
AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosph... 117 2e-26
AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:900142... 109 5e-24
AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosph... 96 7e-20
AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 83 7e-16
AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 60 7e-09
AT5G19210.1 | Symbols: | P-loop containing nucleoside triphosph... 54 4e-07
>AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:22298668-22301719 REVERSE LENGTH=739
Length = 739
Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/724 (60%), Positives = 543/724 (75%), Gaps = 41/724 (5%)
Query: 5 KSKEFRKQQRLSEEEEIKLLDSWIQSQKPNSGSNPMSLPPLPKDAPVGRIDD----TTFS 60
K+K RKQ RL+E EEI LL WI+SQKP+SG NP+SL PLPKD+ +G+ +D T FS
Sbjct: 6 KTKGMRKQIRLNEVEEINLLKQWIESQKPDSGFNPLSLRPLPKDSKIGKSEDGKNGTVFS 65
Query: 61 RYAGVNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAF 120
RYAGV +F+ LP+S KT GL+DAK+V MTD+Q A++PHALCGRD+LGAA+TGSGKTLAF
Sbjct: 66 RYAGVRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAF 125
Query: 121 IIPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVN 180
+IP+LEKLHRERW PEDGVG IIISPTRELA Q F VL VGK+H FSAGLLIGGR+ V+
Sbjct: 126 VIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVD 185
Query: 181 MEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQ 240
+EKERV+E+NIL+C PGRLLQHMDETPNF+C Q+Q+L+LDEADR+LDS FK L+ IISQ
Sbjct: 186 VEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQ 245
Query: 241 LPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLD 300
LPK RQT LFSATQTK ++DLARLSL+DPEY+SVH E+VTATPT L Q VMIVP+++KLD
Sbjct: 246 LPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLD 305
Query: 301 MLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFC 360
MLWSFIKTHL S+ LVFLS+ KQVKFV EAF KL PGIPLK LHG+M QE+RM +YS+F
Sbjct: 306 MLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFI 365
Query: 361 EKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLPS 420
E++SVLF TDV ARGLDF+KAVDWVVQVDCPE+VASYIHRVGRTAR+ + GKS+LFL PS
Sbjct: 366 ERQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPS 425
Query: 421 EVEMLERLKAAKVPVHLTKPRKELLQPVSGLLASLLIKYPDLQPRAQRAFVTYLRSIHIQ 480
E +M+E+L+ AKVP+ L K + LQ VS LLA+LL+KYPDLQ AQRAF+TYLRSIH +
Sbjct: 426 EEKMIEKLQEAKVPIKLIKANNQKLQEVSRLLAALLVKYPDLQGVAQRAFITYLRSIHKR 485
Query: 481 KDKEIFDVLKLPIDEYSASLGLPMTPKVRFLNQKIKSKAVSTTSVLAEPEDSNK-ENDFV 539
+DKEIFDV KL I+ +SASLGLPMTP++RF N K K K V +S+ E E++ + E V
Sbjct: 486 RDKEIFDVSKLSIENFSASLGLPMTPRIRFTNLKTKKKGVYESSIAMEIENAQEYEAPLV 545
Query: 540 VSTNKLDTIALKDEETDDDLLRAADTSNEGDV--KSSEITEIM-PATRLLKKKKLKINVH 596
V + L +D E +D L+ EG V KS++ E++ P R+LK KKLKIN+H
Sbjct: 546 VKKDLLG----EDLEEEDFALKP---RKEGKVVEKSTKEEEVLIPGNRVLKNKKLKINLH 598
Query: 597 RPLGTRVVFDDEGNTLPPLARIADTHGGKESLLLDPEQKAEYYKRMRADLKKADKEDTGN 656
RP G+RVV D+EGN+L PLA +A G + + LD E+ +YYK++ A+++KAD ED
Sbjct: 599 RPFGSRVVLDEEGNSLAPLASVAAEAGTE--VALDEERMNDYYKKVGAEMRKADIEDKKV 656
Query: 657 AEEEDSEV------------------------DNSGSEGDEAVDRRHKKSKIYFDSDSDG 692
+E E D SGS DE + KI D++ +G
Sbjct: 657 DKERRREKRMKQKIKRKRGAMEDEEEEEEEDHDGSGSSDDETGRNSKRAKKIVSDNEENG 716
Query: 693 GERN 696
G+ N
Sbjct: 717 GKIN 720
>AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:6399724-6403007
REVERSE LENGTH=568
Length = 568
Score = 326 bits (836), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 189/454 (41%), Positives = 273/454 (60%), Gaps = 8/454 (1%)
Query: 68 FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEK 127
F L LS++T +++ F MT IQ S+ L G+DVLGAA+TGSGKTLAF+IP +E
Sbjct: 91 FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVEL 150
Query: 128 LHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVN 187
L +ER+ P +G G I+I PTRELA Q +V + + K+H + ++IGG + + +
Sbjct: 151 LFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIAS 210
Query: 188 ELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPKRRQT 247
N++I TPGRLL H+ T F ++ LV+DEADRIL+ F++D+N I+ LPK RQT
Sbjct: 211 GSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQT 270
Query: 248 FLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIK 307
LFSATQT ++DLAR+SL P ++ V + T L+Q +VP Q+L +L SF+K
Sbjct: 271 ALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLK 330
Query: 308 THLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCE-KRSVL 366
+L K +VF S+CK V+F E K + + +HG M Q RR + +F + K+ +L
Sbjct: 331 KNLNKKIMVFFSTCKSVQFHTEIMK--ISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGIL 388
Query: 367 FSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSV-GKSVLFLLPSEVEML 425
TDVAARGLD +VDW++Q D P+ YIHRVGRTAR + GK++L L+P E++ +
Sbjct: 389 LCTDVAARGLDI-PSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFI 447
Query: 426 ERLKAAKVPVHLTKPRKELLQPVSGLLASLLIKYPDLQPRAQRAFVTYLRSIHIQKDKEI 485
LKAAKVPV + ++ L V L + K +L A+ A+ YL + + K+I
Sbjct: 448 RYLKAAKVPVKELEFNEKRLSNVQSALEKCVAKDYNLNKLAKDAYRAYLSAYNSHSLKDI 507
Query: 486 FDVLKLPIDEYSASLGLPMTPKVRFLNQKIKSKA 519
F+V +L + + S PKV N I+S A
Sbjct: 508 FNVHRLDLLAVAESFCFSSPPKV---NLNIESGA 538
>AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:26358328-26361244 FORWARD LENGTH=633
Length = 633
Score = 325 bits (834), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 184/446 (41%), Positives = 266/446 (59%), Gaps = 10/446 (2%)
Query: 68 FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEK 127
F L LS T +++ F MT IQ ++P + G DVLGAA+TGSGKTLAF+IP +E
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVEL 215
Query: 128 LHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVN 187
L+R ++ P +G G ++I PTRELA Q + V K + KYH + G +IGG K +
Sbjct: 216 LYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAK 275
Query: 188 ELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPKRRQT 247
+N+L+ TPGRLL H++ T F ++ LV+DEADRIL+ F++DL I++ LPK RQT
Sbjct: 276 GVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQT 335
Query: 248 FLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIK 307
LFSATQ+ ++DLAR+SL P Y+ V E T L+Q +VP +L L +F+K
Sbjct: 336 SLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLK 395
Query: 308 T-HLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLH--GRMKQERRMAIYSEFCEKRS 364
+ K +VF S+CK KF E F+ I CL G + Q +R + +F + +
Sbjct: 396 RFQGKKKIMVFFSTCKSTKFHAELFRY----IKFDCLEIRGGIDQNKRTPTFLQFIKAET 451
Query: 365 -VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSV-GKSVLFLLPSEV 422
+L T+VAARGLDF VDW+VQ D P+N YIHRVGRTAR + GK++L L P E+
Sbjct: 452 GILLCTNVAARGLDF-PHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQEL 510
Query: 423 EMLERLKAAKVPVHLTKPRKELLQPVSGLLASLLIKYPDLQPRAQRAFVTYLRSIHIQKD 482
+ ++ LKAAK+PV + ++ L V + +L+ + L+ A+ A+ TY+
Sbjct: 511 KFIQYLKAAKIPVEEHEFEEKKLLDVKPFVENLISENYALKESAKEAYKTYISGYDSHSM 570
Query: 483 KEIFDVLKLPIDEYSASLGLPMTPKV 508
K++F+V +L + E + S G PKV
Sbjct: 571 KDVFNVHQLNLTEVATSFGFSDPPKV 596
>AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26897235-26899381 REVERSE LENGTH=558
Length = 558
Score = 243 bits (619), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 164/456 (35%), Positives = 247/456 (54%), Gaps = 11/456 (2%)
Query: 67 RFSHL--PLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPV 124
RFS L PLS+ I+ L + F T +Q ++P +DV+ A TGSGKTLAF++P
Sbjct: 15 RFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPF 74
Query: 125 LEKLHRERWGPED--GVGSIIISPTRELAGQLFDVLKA-VGKYHGFSAGLLIGGRK-DVN 180
+E + R P V +IISPTREL+ Q+ V + V ++ LL+GGR+ + +
Sbjct: 75 IEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEAD 134
Query: 181 MEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQ 240
M N+LI TPGRL M D +++L+LDEADR+LD GF+K +N IIS+
Sbjct: 135 MNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISR 194
Query: 241 LPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLD 300
LPK+R+T LFSATQT+++ DLA+ L++ + ES + T + L + DQK
Sbjct: 195 LPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSS 254
Query: 301 MLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHP--GIPLKCLHGRMKQERRMAIYSE 358
L + + K +VF +C V + K+ I HG+M Q+ R +
Sbjct: 255 QLVHLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALAS 314
Query: 359 FCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFL 417
F E S VL TDVAARGLD +D+VVQ D P++ +IHRVGRTAR + G++++FL
Sbjct: 315 FTEASSGVLLCTDVAARGLDI-PGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFL 373
Query: 418 LPSEVEMLERLKAAKVPVHLTKPRKELLQPVSGLLASLLIKYPDLQPRAQRAFVTYLRSI 477
+P E + +E ++ +VP+ K E V ++ SL IK + + +AFV+++R+
Sbjct: 374 MPKETDYVEFMRIRRVPLQERKC-SENASDVIPIIRSLAIKDRAVLEKGLQAFVSFVRAY 432
Query: 478 HIQKDKEIFDVLKLPIDEYSASLGLPMTPKVRFLNQ 513
IF L I + + G+ P + + Q
Sbjct: 433 KEHHCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQ 468
>AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476402
REVERSE LENGTH=788
Length = 788
Score = 238 bits (606), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 163/469 (34%), Positives = 261/469 (55%), Gaps = 34/469 (7%)
Query: 62 YAGVNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFI 121
Y RF H PLS ++ ++DA + MT +Q A+LP L G+DVL AKTG+GKT+AF+
Sbjct: 316 YLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFL 375
Query: 122 IPVLEKLHRERWGPEDG----VGSIIISPTRELAGQLFDVLKAVGKYH-GFSAGLLIGGR 176
+P +E + + D + +++I PTRELA Q + KYH ++IGG
Sbjct: 376 LPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGT 435
Query: 177 KDVNMEKERV--NELNILICTPGRLLQHMDETPNFDC--SQMQVLVLDEADRILDSGFKK 232
+ + +E++R+ N IL+ TPGRL H++ TP F ++VLVLDEAD +LD GF+K
Sbjct: 436 R-LGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRK 494
Query: 233 DLNAIISQLPKRRQTFLFSATQTKSIQDLARLSL-KDPEYLSVHEESVTATPTLLKQIVM 291
D+ IIS +PK RQTFLFSAT + ++ + ++L +D E+++ E T ++Q+ M
Sbjct: 495 DIERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHM 554
Query: 292 IVPLDQKLDMLWSFIKTHLQS----KTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRM 347
I LD+ +L++ ++ H+ K +VF ++ K V + +L+ + ++ +H R
Sbjct: 555 IASLDRHFSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELN--LNVREIHSRK 612
Query: 348 KQERRMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTAR 406
Q R + +EF + + +L ++DV+ARG+D+ V V+QV P++ YIHR+GRT R
Sbjct: 613 PQSYRTRVSNEFRKSKGLILVTSDVSARGVDY-PDVTLVLQVGLPKDREQYIHRLGRTGR 671
Query: 407 YKSVGKSVLFLLPSEVEMLERLK---AAKVPVHLTKPRKELLQPVSGLLASLLIKYPDLQ 463
G+ +L L P E L LK K P+ P E ++ V L + ++ +
Sbjct: 672 KGKEGEGILLLAPWEEYFLSSLKDLPITKSPLPSIDP--ETVKKVQKALCHVEMRNKEA- 728
Query: 464 PRAQRAFVTYLRSIH-IQKDKEIFDVLKLPIDEYSASLGL---PMTPKV 508
A +A++ Y S I +DK D L +E+S S+GL P PK+
Sbjct: 729 --AYQAWLGYYNSQKMIGRDK---DRLVELANEFSRSMGLDNPPAIPKL 772
>AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:1612077-1615195
FORWARD LENGTH=593
Length = 593
Score = 235 bits (600), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 163/467 (34%), Positives = 251/467 (53%), Gaps = 22/467 (4%)
Query: 66 NRFSHL--PLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIP 123
RFS L PLS I+ L + F T +Q A++P +DV A TGSGKTLAF++P
Sbjct: 14 TRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVP 73
Query: 124 VLEKLHRERWGPED--GVGSIIISPTRELAGQLFDVLKA-VGKYHGFSAGLLIGGRKDVN 180
++E L R P V +IISPTREL+ Q+++V + V ++ LL+GGR +V
Sbjct: 74 LVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGR-EVK 132
Query: 181 MEKERVNE--LNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAII 238
+ + + E N+LI TPGRL M+ D +++L+LDEADR+L+ GF++ +N II
Sbjct: 133 ADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYII 192
Query: 239 SQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESV---------TATPTLLKQI 289
S+LPK+R+T LFSATQT+ +++LA+ L++P + V +S + TP+ L
Sbjct: 193 SRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLE 252
Query: 290 VMIVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHP--GIPLKCLHGRM 347
M D+K L + + K +VF +C V + K+ I L +HG M
Sbjct: 253 YMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDM 312
Query: 348 KQERRMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTAR 406
KQ R + F + S L TDVAARGLD +D+VVQ D P++ + HR GRTAR
Sbjct: 313 KQNARDKALASFTKASSGALLCTDVAARGLDI-PGIDYVVQYDPPQDPNMFNHRAGRTAR 371
Query: 407 YKSVGKSVLFLLPSEVEMLERLKAAKVPVHLTKPRKELLQPVSGLLASLLIKYPDLQPRA 466
G++++FLLP E +E ++ +VP+ K ++ V ++ S +K + +
Sbjct: 372 LGRQGRAIVFLLPKEEAYVEFMRIRRVPLEERKCSED-ASDVIPIIRSAAMKDRAVMEKG 430
Query: 467 QRAFVTYLRSIHIQKDKEIFDVLKLPIDEYSASLGLPMTPKVRFLNQ 513
+AFV+++R+ IF L I + + GL P + + Q
Sbjct: 431 LKAFVSFVRAYKEHHCSFIFRWKDLEIGKLAMGYGLLYLPSMSEVKQ 477
>AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794540-2797548 FORWARD LENGTH=563
Length = 563
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 148/406 (36%), Positives = 226/406 (55%), Gaps = 25/406 (6%)
Query: 39 PMSLPPLPKDAPVGRIDDTTFSRYAGVNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLP 98
P S PL V +I T+ S Y RF PLS T+ G+ DA F MT +Q A+LP
Sbjct: 59 PASTTPL-----VTQIAKTSDS-YLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLP 112
Query: 99 HALCGRDVLGAAKTGSGKTLAFIIPVLEKLHRERWGPEDG----VGSIIISPTRELAGQL 154
L G+D+L AKTG+GKT+AF++P +E + + D + +++ PTRELA Q
Sbjct: 113 LILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQA 172
Query: 155 FDVLKAVGKYH-GFSAGLLIGGRKDVNMEKERVNE--LNILICTPGRLLQHMDETPNFDC 211
+ KYH ++IGG K + E+ R+ + IL+ TPGRL H+D T F
Sbjct: 173 AAEANILLKYHPSIGVQVVIGGTK-LPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFAT 231
Query: 212 SQM--QVLVLDEADRILDSGFKKDLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLK-D 268
M +VLVLDEAD +LD GF++++ II+ +PK+RQTFLFSAT + ++ + ++LK D
Sbjct: 232 RLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQICHVALKRD 291
Query: 269 PEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQS----KTLVFLSSCKQV 324
E+++ +E T + Q+ MI LD+ +L+ +K H+ K ++F ++
Sbjct: 292 HEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLKKHITDNVGYKVIIFCTTAMVT 351
Query: 325 KFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVD 383
+ V + KL + ++ +H R Q R + EF + +S +L ++DV+ARG+D+ V
Sbjct: 352 RLVADLLGKL--SLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPD-VS 408
Query: 384 WVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLPSEVEMLERLK 429
VVQ+ P + YIHR+GRT R G+ VL L P E L +K
Sbjct: 409 LVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFLSSVK 454
>AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790341-2794059
FORWARD LENGTH=850
Length = 850
Score = 230 bits (587), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 254/479 (53%), Gaps = 30/479 (6%)
Query: 48 DAPVGRIDDTTFSRYAGVNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVL 107
D P G T+ S Y RF PLS ++ ++DA F MT +Q A+LP L G+DVL
Sbjct: 365 DKPTGEHVKTSDS-YLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVL 423
Query: 108 GAAKTGSGKTLAFIIPVLEKLHRERWGPEDG----VGSIIISPTRELAGQLFDVLKAVGK 163
AKTG+GKT+AF++P +E + + D + +++ PTRELA Q + K
Sbjct: 424 AKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLK 483
Query: 164 YH-GFSAGLLIGGRK-DVNMEKERVNELNILICTPGRLLQHMDETPNFDCSQM--QVLVL 219
YH ++IGG K + + N IL+ TPGRL H++ T F M +VLVL
Sbjct: 484 YHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVL 543
Query: 220 DEADRILDSGFKKDLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLK-DPEYLSVHEES 278
DEAD +LD GF++D+ II+ +PK+RQTFLFSAT + ++ + ++LK D E+++ +E
Sbjct: 544 DEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEG 603
Query: 279 VTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQS----KTLVFLSSCKQVKFVFEAFKKL 334
T + Q+ MI LD+ +L +K H+ K ++F ++ + V + +L
Sbjct: 604 SGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQL 663
Query: 335 HPGIPLKCLHGRMKQERRMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPEN 393
+ ++ +H R Q R + EF + ++ +L ++DV+ARG+D+ V VVQ+ P +
Sbjct: 664 S--LNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDY-PDVSLVVQMGLPSD 720
Query: 394 VASYIHRVGRTARYKSVGKSVLFLLPSEVEMLERLK---AAKVPVHLTKPRKELLQPVSG 450
YIHR+GRT R G+ VL L P E + +K K P+ P E ++ V
Sbjct: 721 REQYIHRLGRTGRKGKEGEGVLLLAPWEEYFMSSVKDLPITKSPLPPIDP--EAVKRVQK 778
Query: 451 LLASLLIKYPDLQPRAQRAFVTYLRSIH-IQKDKEIFDVLKLPIDEYSASLGLPMTPKV 508
L+ + +K + A +A++ Y +S I +D L +E+S S+GL P +
Sbjct: 779 GLSQVEMKNKEA---AYQAWLGYYKSQKMIARDTTRLVEL---ANEFSRSMGLDSPPAI 831
>AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:16976783-16979392
FORWARD LENGTH=609
Length = 609
Score = 216 bits (551), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 177/541 (32%), Positives = 258/541 (47%), Gaps = 102/541 (18%)
Query: 68 FSHLPLSKKTIDGLRD-AKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLE 126
FS L L K D L++ F A T +Q ++P L GRDVL A TG+GKT+A++ P++
Sbjct: 31 FSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIH 90
Query: 127 KL--HRERWGPEDGVGSIIISPTRELAGQLFDVL-KAVGKYHGFSAGLLIGGRKDVNMEK 183
L H + G +++I PTREL Q+++ L K + ++H G ++GG K EK
Sbjct: 91 HLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAK-EK 149
Query: 184 ERVNE-LNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQL- 241
R+ + ++ILI TPGRLL H+ T +F ++ ++ DEAD IL+ G+ K++ II L
Sbjct: 150 ARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLG 209
Query: 242 -------------PK--RRQTFLFSATQTKSIQDLARLSLKDP-----------EYLSVH 275
PK ++Q L SAT + DLA+LSL DP + LS+
Sbjct: 210 SGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSIE 269
Query: 276 EESV----------------------TATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQ-- 311
+ P+ L Q + VP +L L S +K +
Sbjct: 270 SPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNLFERE 329
Query: 312 --SKTLVFLSSCKQVKFVFEAFKKLH--PG----------IPLKC----LHGRMKQERRM 353
K +VF S+ V F + + P + LKC LHG M+QE R
Sbjct: 330 ASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRR 389
Query: 354 AIYSEF-CEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGK 412
+ + F EK++VL STDVAARGLDF K V ++Q DCP Y+HRVGRTAR G+
Sbjct: 390 SAFGTFKTEKQAVLLSTDVAARGLDFPK-VRCIIQYDCPGEATEYVHRVGRTARIGEKGE 448
Query: 413 SVLFLLPSEVEMLERLKAA--------------KVPVHLTKPR-KELLQ--------PVS 449
++LFL P E++ L+ LK K P+ PR K++L +
Sbjct: 449 ALLFLQPIEIDYLKELKKHGASLTEYPLMKVLDKFPIPGNMPRIKKVLSLESHPWVISLQ 508
Query: 450 GLLASLLIKYPDLQPRAQRAFVTYLRSIHIQKD--KEIFDVLKLPIDEYSASLGLPMTPK 507
L SL P ++ A+ AFV+++R K K IF V KL + + S L P
Sbjct: 509 RALESLTYAEPKMKSLAKNAFVSWVRGYAAHKGELKSIFVVKKLHLGHVAKSFALREQPS 568
Query: 508 V 508
+
Sbjct: 569 L 569
>AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:24546601-24549148 REVERSE LENGTH=456
Length = 456
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/385 (34%), Positives = 204/385 (52%), Gaps = 19/385 (4%)
Query: 65 VNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPV 124
V F+ L + ++ + + + IQ +LP AL G+DV+G A+TGSGKT AF IP+
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67
Query: 125 LEKLHRERWGPEDGVG--------SIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGR 176
L+ L + E G + ++SPTRELA Q+ + +A+G +L+GG
Sbjct: 68 LQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGI 127
Query: 177 KDVNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNA 236
+ ++++ TPGRL HM +T F ++ LVLDEADR+L+ F+K LN
Sbjct: 128 DRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQ 187
Query: 237 IISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLD 296
I+ ++P R+TFLFSAT TK ++ L R L++P + + S +T LKQ V
Sbjct: 188 ILEEIPLERKTFLFSATMTKKVRKLQRACLRNP--VKIEAASKYSTVDTLKQQYRFVAAK 245
Query: 297 QKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKL-HPGIPLKCLHGRMKQERRMAI 355
K L + +S +++F +C +F+ + L IP + G+M Q +R+
Sbjct: 246 YKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIP---ISGQMTQSKRLGA 302
Query: 356 YSEF-CEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSV 414
++F + ++L TDVA+RGLD +VD V+ D P N YIHRVGRTAR G +
Sbjct: 303 LNKFKAGECNILVCTDVASRGLDI-PSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGI 361
Query: 415 LFLLPSEVEM---LERLKAAKVPVH 436
+ E+E +E+L K+P +
Sbjct: 362 SLVNQYELEWYIQIEKLIGKKLPEY 386
>AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:9362176-9366449 REVERSE LENGTH=789
Length = 789
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/378 (35%), Positives = 205/378 (54%), Gaps = 18/378 (4%)
Query: 59 FSRYAGV----NRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGS 114
FS GV + F L LS+ + + T IQ A +P AL GRD+ +A TGS
Sbjct: 156 FSTVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 115 GKTLAFIIPVLEKLHRERWGPEDGVGS--IIISPTRELAGQLFDVLKAVGKYHGFSAGLL 172
GKT AF +P LE+L + P+ + +I++PTRELA Q+ +++ + ++ GL+
Sbjct: 216 GKTAAFALPTLERLL---FRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLI 272
Query: 173 IGGRKDVNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKK 232
+GG E + +I++ TPGR++ H+ + + D + VL+LDEADR+L +GF
Sbjct: 273 VGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFAT 332
Query: 233 DLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMI 292
++ ++ PKRRQT LFSAT T+ +++L +LSL P LS + S P L +++V I
Sbjct: 333 EITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSA-DPSARRPPGLTEEVVRI 391
Query: 293 VPLDQ--KLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQE 350
+ + +L S +SK ++F S KQ + L G+ LHG + Q
Sbjct: 392 RRTREANQEAVLLSLCTRTFKSKVIIF-SGTKQAAHRLKILFGL-AGLKAAELHGNLTQA 449
Query: 351 RRMAIYSEFCEKRSV--LFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYK 408
+R+ E K+ V L +TDVAARGLD V V+ CP + SY+HRVGRTAR
Sbjct: 450 QRLDSL-ELFRKQEVDFLIATDVAARGLDII-GVQTVINYACPREIDSYVHRVGRTARAG 507
Query: 409 SVGKSVLFLLPSEVEMLE 426
G +V F+ S+ +L+
Sbjct: 508 REGYAVTFVTDSDRSLLK 525
>AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides, in
phosphorus-containing anhydrides;ATP-dependent
helicases;nucleic acid binding;ATP binding;RNA
binding;helicases | chr1:28947887-28951526 REVERSE
LENGTH=845
Length = 845
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 123/358 (34%), Positives = 198/358 (55%), Gaps = 10/358 (2%)
Query: 68 FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEK 127
F L L + ++ + T IQR ++P L G DV+ A+TGSGKT AF+IP+LEK
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 128 LHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVN 187
L + P+ GV ++I+SPTR+LA Q K +GK+ LL+GG + +E
Sbjct: 90 LKQHV--PQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTK 147
Query: 188 ELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPKRRQT 247
+++I TPGRL+ + E + ++ +V DEAD + GF + L+ I++QL + RQT
Sbjct: 148 GPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQT 207
Query: 248 FLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIK 307
LFSAT ++ + A+ L++P+ + + E+ +P L + + P ++K L ++
Sbjct: 208 LLFSATLPSALAEFAKAGLREPQLVRLDVEN-KISPDLKLSFLTVRP-EEKYSALLYLVR 265
Query: 308 THLQS--KTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSV 365
H+ S +TL+F+S+ V+FV F KL P C +G M Q+ R S F ++++
Sbjct: 266 EHISSDQQTLIFVSTKHHVEFVNSLF-KLENIEPSVC-YGDMDQDARKIHVSRFRARKTM 323
Query: 366 LF-STDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLPSEV 422
L TD+AARG+D +D V+ D P ++HRVGR AR G + F+ P ++
Sbjct: 324 LLIVTDIAARGIDI-PLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDM 380
>AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:3576483-3580396 FORWARD LENGTH=845
Length = 845
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 204/380 (53%), Gaps = 22/380 (5%)
Query: 67 RFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLE 126
RF +S T+ L + V MT +Q A+L L G+D L AKTG+GK++AF++P +E
Sbjct: 376 RFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIE 435
Query: 127 KLHRERWGPEDGVGSI------IISPTRELAGQLFDVLKAVGKYH-GFSAGLLIGGRKDV 179
+ + GV + I+ PTRELA Q+ KA+ K H G LIGG +
Sbjct: 436 TVLKA-MNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTR-F 493
Query: 180 NMEKERVNE--LNILICTPGRLLQHMDETPNFDCSQM--QVLVLDEADRILDSGFKKDLN 235
++++R+ ILI TPGRLL H++ M ++ ++DEAD +LD GFK+D+
Sbjct: 494 RLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVE 553
Query: 236 AIISQLPKRRQTFLFSATQTKSIQDLARLSLK-DPEYLSVHEESVTATPTLLKQIVMIVP 294
II LP++RQ+ LFSAT K ++ +++L LK D Y+ T +KQ ++ P
Sbjct: 554 KIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAP 613
Query: 295 LDQKLDMLWSFIKTHLQS----KTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQE 350
+ ++ +K H+ + K +VF S+ ++ +++ + ++ +H R Q
Sbjct: 614 HESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMK--LNVREIHARKPQL 671
Query: 351 RRMAIYSEFCE-KRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKS 409
R + EF E R +L ++DV+ARG+++ V V+QV P + YIHR+GRT R
Sbjct: 672 HRTCVSDEFKESNRLILVTSDVSARGMNYPD-VTLVIQVGIPSDREQYIHRLGRTGREGK 730
Query: 410 VGKSVLFLLPSEVEMLERLK 429
GK +L + P E L+ LK
Sbjct: 731 GGKGLLLIAPWERYFLDELK 750
>AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 |
chr1:5568482-5570487 REVERSE LENGTH=491
Length = 491
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/409 (33%), Positives = 213/409 (52%), Gaps = 25/409 (6%)
Query: 28 IQSQKPNSGSNPMSLPPLPKDAPVGRIDDTTFSRYAGVNRFSHLPLSKKTIDGLRDAKFV 87
IQSQK +S N P K DTT F L L++ ++ ++
Sbjct: 28 IQSQKLDSDQNT---PQFEKFTNPNPSSDTT-----SATNFEGLGLAEWAVETCKELGMR 79
Query: 88 AMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHRERWGPEDGVGSIIISPT 147
T +Q +P L GRDVLG A+TGSGKT AF +P+L +L + +G V +++++PT
Sbjct: 80 KPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYG----VFALVVTPT 135
Query: 148 RELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVNELNILICTPGRLLQHMDETP 207
RELA QL + KA+G +++GG + V+ +I+I TPGR+ ++ P
Sbjct: 136 RELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNP 195
Query: 208 NFD--CSQMQVLVLDEADRILDSGFKKDLNAIISQLPKRRQTFLFSATQTKSIQDLARLS 265
+ S+ + LVLDEADR+LD GF+ +L I LPK RQT LFSAT T ++Q L S
Sbjct: 196 DVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLEHS 255
Query: 266 LKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSK----TLVFLSSC 321
+ Y E + TL +Q + D K ++ I + ++ K ++F+S+C
Sbjct: 256 -SNKAYFYEAYEGLKTVDTLTQQFI-FEDKDAK-ELYLVHILSQMEDKGIRSAMIFVSTC 312
Query: 322 KQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEF-CEKRSVLFSTDVAARGLDFNK 380
+ + + +L + +H Q R++ S+F K +L +TDVA+RGLD
Sbjct: 313 RTCQRLSLMLDELE--VENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDI-P 369
Query: 381 AVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLPSEVEMLERLK 429
VD V+ D P + Y+HRVGRTAR G +V + ++V+++ +++
Sbjct: 370 TVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIE 418
>AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318967-25322071
REVERSE LENGTH=591
Length = 591
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 188/339 (55%), Gaps = 16/339 (4%)
Query: 86 FVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHRE-RWGPEDGVGSIII 144
F T IQ P AL GRD++G A+TGSGKTLA+++P L + + R G +DG +I+
Sbjct: 185 FTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLIL 244
Query: 145 SPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVNELNILICTPGRLLQHMD 204
+PTRELA Q+ + + G G + + GG ++ + I+I TPGRL+ M
Sbjct: 245 APTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID-ML 303
Query: 205 ETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPKRRQTFLFSATQTKSIQDLARL 264
E + + ++ LVLDEADR+LD GF+ + I+SQ+ RQT L+SAT + ++ LAR
Sbjct: 304 ECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQ 363
Query: 265 SLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQ-SKTLVFLSS--- 320
L+DP + + A + + Q++ IVP +K + L + +K + SK L+F+ +
Sbjct: 364 FLRDPYKAIIGSTDLKANQS-INQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRG 422
Query: 321 CKQVKFVFEAFKKLH-PGIPLKCLHGRMKQERRMAIYSEFCEKRS-VLFSTDVAARGLDF 378
C QV ++L G P +HG Q R + +EF RS ++ +TDVAARGLD
Sbjct: 423 CDQVT------RQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDV 476
Query: 379 NKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFL 417
K + VV D P + YIHR+GRT R + G + F
Sbjct: 477 -KDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFF 514
>AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:23463284-23466451 REVERSE LENGTH=798
Length = 798
Score = 189 bits (480), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 204/379 (53%), Gaps = 20/379 (5%)
Query: 67 RFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLE 126
RF +S T+ L + + MT +Q A+L L G+D L AKTG+GK++AF++P +E
Sbjct: 329 RFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIE 388
Query: 127 KLHRERWGPEDGVG------SIIISPTRELAGQLFDVLKAVGKYH-GFSAGLLIGG-RKD 178
+ + GV ++I+ PTRELA Q+ KA+ K+H G LIGG R
Sbjct: 389 TVLKA-MNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFK 447
Query: 179 VNMEKERVNELNILICTPGRLLQHMDETPNFDCSQM--QVLVLDEADRILDSGFKKDLNA 236
++ ++ ILI TPGRLL H++ M ++ ++DEAD +LD GF++D+
Sbjct: 448 LDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEK 507
Query: 237 IISQLPKRRQTFLFSATQTKSIQDLARLSLK-DPEYLSVHEESVTATPTLLKQIVMIVPL 295
II LP++RQ+ LFSAT K ++ +++L LK D Y+ T ++Q ++ P
Sbjct: 508 IIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPH 567
Query: 296 DQKLDMLWSFIKTHLQS----KTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQER 351
+ ++ +K H+ + K +VF S+ ++ +++ + ++ +H R Q
Sbjct: 568 ESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMK--LNVREIHARKPQLH 625
Query: 352 RMAIYSEFCE-KRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSV 410
R + EF E R +L ++DV+ARG+++ V V+QV P + YIHR+GRT R
Sbjct: 626 RTRVSDEFKESNRLILVTSDVSARGMNYPD-VTLVIQVGIPSDREQYIHRLGRTGREGKG 684
Query: 411 GKSVLFLLPSEVEMLERLK 429
G+ +L + P E L+ LK
Sbjct: 685 GEGLLLIAPWERYFLDELK 703
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 189/387 (48%), Gaps = 18/387 (4%)
Query: 44 PLPKDAPVGRIDDTTFSRYAGVN-----------RFSHLPLSKKTIDGLRDAKFVAMTDI 92
PLP AP + +SR + F + + + A F A T I
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 93 QRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAG 152
Q S P A+ GRD++ AKTGSGKTL ++IP L R R G +++SPTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELAT 244
Query: 153 QLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVNELNILICTPGRLLQHMDETPNFDCS 212
Q+ + G+ S L GG ++ +I++ TPGR L + E
Sbjct: 245 QIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGR-LNDILEMRRISLR 303
Query: 213 QMQVLVLDEADRILDSGFKKDLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYL 272
Q+ LVLDEADR+LD GF+ + I+ ++P +RQT +++AT K ++ +A L +P +
Sbjct: 304 QISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQV 363
Query: 273 SVHE-ESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAF 331
++ + + A ++ + I ++ P++++ + SK ++F C + +
Sbjct: 364 NIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIF---CSTKRMCDQLT 420
Query: 332 KKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDC 390
+ L +HG Q R + ++F R+ VL +TDVAARGLD K + VV D
Sbjct: 421 RNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDV-KDIRAVVNYDF 479
Query: 391 PENVASYIHRVGRTARYKSVGKSVLFL 417
P V Y+HR+GRT R + G++ F
Sbjct: 480 PNGVEDYVHRIGRTGRAGATGQAFTFF 506
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 189/387 (48%), Gaps = 18/387 (4%)
Query: 44 PLPKDAPVGRIDDTTFSRYAGVN-----------RFSHLPLSKKTIDGLRDAKFVAMTDI 92
PLP AP + +SR + F + + + A F A T I
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 93 QRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAG 152
Q S P A+ GRD++ AKTGSGKTL ++IP L R R G +++SPTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELAT 244
Query: 153 QLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVNELNILICTPGRLLQHMDETPNFDCS 212
Q+ + G+ S L GG ++ +I++ TPGR L + E
Sbjct: 245 QIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGR-LNDILEMRRISLR 303
Query: 213 QMQVLVLDEADRILDSGFKKDLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYL 272
Q+ LVLDEADR+LD GF+ + I+ ++P +RQT +++AT K ++ +A L +P +
Sbjct: 304 QISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQV 363
Query: 273 SVHE-ESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAF 331
++ + + A ++ + I ++ P++++ + SK ++F C + +
Sbjct: 364 NIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIF---CSTKRMCDQLT 420
Query: 332 KKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDC 390
+ L +HG Q R + ++F R+ VL +TDVAARGLD K + VV D
Sbjct: 421 RNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDV-KDIRAVVNYDF 479
Query: 391 PENVASYIHRVGRTARYKSVGKSVLFL 417
P V Y+HR+GRT R + G++ F
Sbjct: 480 PNGVEDYVHRIGRTGRAGATGQAFTFF 506
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 189/387 (48%), Gaps = 18/387 (4%)
Query: 44 PLPKDAPVGRIDDTTFSRYAGVN-----------RFSHLPLSKKTIDGLRDAKFVAMTDI 92
PLP AP + +SR + F + + + A F A T I
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 93 QRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAG 152
Q S P A+ GRD++ AKTGSGKTL ++IP L R R G +++SPTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELAT 244
Query: 153 QLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVNELNILICTPGRLLQHMDETPNFDCS 212
Q+ + G+ S L GG ++ +I++ TPGR L + E
Sbjct: 245 QIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGR-LNDILEMRRISLR 303
Query: 213 QMQVLVLDEADRILDSGFKKDLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYL 272
Q+ LVLDEADR+LD GF+ + I+ ++P +RQT +++AT K ++ +A L +P +
Sbjct: 304 QISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQV 363
Query: 273 SVHE-ESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAF 331
++ + + A ++ + I ++ P++++ + SK ++F C + +
Sbjct: 364 NIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIF---CSTKRMCDQLT 420
Query: 332 KKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDC 390
+ L +HG Q R + ++F R+ VL +TDVAARGLD K + VV D
Sbjct: 421 RNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDV-KDIRAVVNYDF 479
Query: 391 PENVASYIHRVGRTARYKSVGKSVLFL 417
P V Y+HR+GRT R + G++ F
Sbjct: 480 PNGVEDYVHRIGRTGRAGATGQAFTFF 506
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=618
Length = 618
Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 189/387 (48%), Gaps = 18/387 (4%)
Query: 44 PLPKDAPVGRIDDTTFSRYAGVN-----------RFSHLPLSKKTIDGLRDAKFVAMTDI 92
PLP AP + +SR + F + + + A F A T I
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 93 QRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAG 152
Q S P A+ GRD++ AKTGSGKTL ++IP L R R G +++SPTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELAT 244
Query: 153 QLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVNELNILICTPGRLLQHMDETPNFDCS 212
Q+ + G+ S L GG ++ +I++ TPGR L + E
Sbjct: 245 QIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGR-LNDILEMRRISLR 303
Query: 213 QMQVLVLDEADRILDSGFKKDLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYL 272
Q+ LVLDEADR+LD GF+ + I+ ++P +RQT +++AT K ++ +A L +P +
Sbjct: 304 QISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQV 363
Query: 273 SVHE-ESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAF 331
++ + + A ++ + I ++ P++++ + SK ++F C + +
Sbjct: 364 NIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIF---CSTKRMCDQLT 420
Query: 332 KKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDC 390
+ L +HG Q R + ++F R+ VL +TDVAARGLD K + VV D
Sbjct: 421 RNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDV-KDIRAVVNYDF 479
Query: 391 PENVASYIHRVGRTARYKSVGKSVLFL 417
P V Y+HR+GRT R + G++ F
Sbjct: 480 PNGVEDYVHRIGRTGRAGATGQAFTFF 506
>AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |
chr3:1985697-1989666 REVERSE LENGTH=1088
Length = 1088
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 178/339 (52%), Gaps = 7/339 (2%)
Query: 81 LRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHRERWGPEDGVG 140
L A F + T IQ + P AL RD++ AKTGSGKTL ++IP L R +G
Sbjct: 450 LLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPT 509
Query: 141 SIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVNELNILICTPGRLL 200
+I++PTRELA Q+ D G+ S L GG KE +I++ TPGR L
Sbjct: 510 VLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGR-L 568
Query: 201 QHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPKRRQTFLFSATQTKSIQD 260
+ E D Q+ +LVLDEADR+LD GF+ + I++++P RRQT +++AT K ++
Sbjct: 569 NDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRK 628
Query: 261 LARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQ-SKTLVFLS 319
+A L +P +++ A + Q V +VP +K L +++ + SK ++F S
Sbjct: 629 IASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCS 688
Query: 320 SCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRS-VLFSTDVAARGLDF 378
+ + + + + + +HG Q R + ++F +S VL +TDVAARGLD
Sbjct: 689 TKRLCDHLARSVGRHFGAV---VIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDI 745
Query: 379 NKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFL 417
K + V+ D P V Y+HR+GRT R + G + F
Sbjct: 746 -KDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFF 783
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 124/394 (31%), Positives = 199/394 (50%), Gaps = 17/394 (4%)
Query: 65 VNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPV 124
V F + ++ ++ A F T IQ P A+ GRD++G A+TGSGKTL++++P
Sbjct: 98 VKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPA 157
Query: 125 LEKLHRE-RWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEK 183
+ ++ + DG ++++PTRELA Q+ G + GG +
Sbjct: 158 IVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVR 217
Query: 184 ERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPK 243
+ + I+I TPGRL+ M E+ N + ++ LVLDEADR+LD GF + I+S +
Sbjct: 218 DLQKGVEIVIATPGRLIDMM-ESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRP 276
Query: 244 RRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLW 303
RQT +SAT K ++ L++ L +P + + + A ++QIV ++ QK + L
Sbjct: 277 DRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKAN-RAIRQIVDVISESQKYNKLV 335
Query: 304 SFIKTHLQ-SKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEK 362
++ + S+ LVFL + K + + G P +HG Q R + SEF
Sbjct: 336 KLLEDIMDGSRILVFLDTKKGCDQITRQLR--MDGWPALSIHGDKSQAERDWVLSEFRSG 393
Query: 363 RS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLPSE 421
+S ++ +TDVAARGLD K V +V+ D P ++ Y+HR+GRT R + G + F
Sbjct: 394 KSPIMTATDVAARGLDV-KDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT--- 449
Query: 422 VEMLERLKAAKVPVHLTKPRKELLQPVSGLLASL 455
+ A+ LT +E Q VS LAS+
Sbjct: 450 ------VANARFAKELTNILQEAGQKVSPELASM 477
>AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=712
Length = 712
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/362 (33%), Positives = 190/362 (52%), Gaps = 20/362 (5%)
Query: 63 AGVNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFII 122
AG N + LP + + + A F A + IQ S P A+ RD++ AKTGSGKTL ++I
Sbjct: 229 AGFNSYLVLPANGRMV---YSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLI 285
Query: 123 PV---LEKLHRE-RWGPEDGVGSIIISPTRELAGQL-FDVLKAVGKYHGFSAGLLIGGRK 177
P L+++H + R GP +++SPTRELA Q+ + LK GK S L GG
Sbjct: 286 PGFMHLQRIHNDSRMGPT----ILVLSPTRELATQIQVEALK-FGKSSKISCACLYGGAP 340
Query: 178 DVNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAI 237
KE ++I++ TPGR L + E Q+ LVLDEADR+LD GF+ + I
Sbjct: 341 KGPQLKEIERGVDIVVATPGR-LNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKI 399
Query: 238 ISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHE-ESVTATPTLLKQIVMIVPLD 296
++++P +RQT +++AT K ++ +A L +P +++ + + A ++ + I ++ P++
Sbjct: 400 VNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPME 459
Query: 297 QKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIY 356
+ + SK ++F C + + + L +HG Q R +
Sbjct: 460 KHSRLEQILRSQEPGSKIIIF---CSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVL 516
Query: 357 SEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVL 415
++F R+ VL +TDVAARGLD K + VV D P V Y+HR+GRT R + G +
Sbjct: 517 NQFRSGRTPVLVATDVAARGLDV-KDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYT 575
Query: 416 FL 417
F
Sbjct: 576 FF 577
>AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:17705382-17708744
FORWARD LENGTH=633
Length = 633
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 132/412 (32%), Positives = 208/412 (50%), Gaps = 35/412 (8%)
Query: 65 VNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPV 124
VN F+ + L + +R K+V T +QR ++P L GRD++ A+TGSGKT AF P+
Sbjct: 158 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPI 217
Query: 125 L------EKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKD 178
+ + + R R ++I+SPTRELA Q+ D K G + GG
Sbjct: 218 ISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPI 277
Query: 179 VNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAII 238
+E ++IL+ TPGR L + E ++ L LDEADR+LD GF+ + I+
Sbjct: 278 NQQLRELERGVDILVATPGR-LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIV 336
Query: 239 SQ--LPKR--RQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVP 294
Q +P R RQT LFSAT + IQ LA L + +L+V ++T +++++ ++
Sbjct: 337 EQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVG-SSTDLIVQRVEFVLD 395
Query: 295 LDQK---LDMLWSFIKTHLQSK---TLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHG-RM 347
D++ +D+L + + +Q K TLVF+ + K+ E + ++ G P +HG R
Sbjct: 396 SDKRSHLMDLLHAQRENGIQGKQALTLVFVET-KRGADSLENWLCIN-GFPATSIHGDRT 453
Query: 348 KQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARY 407
+QER +A+ + + +L +TDVAARGLD V VV D P ++ Y+HR+GRT R
Sbjct: 454 QQEREVALKAFKSGRTPILVATDVAARGLDI-PHVAHVVNFDLPNDIDDYVHRIGRTGRA 512
Query: 408 KSVGKSVLFLLPSEVEMLERLKAAKVPVHLTKPRKELLQPVSGLLASLLIKY 459
G + F L +P EL+Q + + L +Y
Sbjct: 513 GKSGLATAFFNDGNTS-------------LARPLAELMQEANQEVPEWLTRY 551
>AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:21657099-21660352
FORWARD LENGTH=646
Length = 646
Score = 172 bits (436), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 133/412 (32%), Positives = 207/412 (50%), Gaps = 35/412 (8%)
Query: 65 VNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPV 124
VN F+ + L + ++ K+V T +QR ++P GRD++ A+TGSGKT AF P+
Sbjct: 145 VNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPI 204
Query: 125 LEKL----HRERWGPEDGVG--SIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKD 178
+ + H ER GV ++I+SPTRELA Q+ D + G + GG
Sbjct: 205 ISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPV 264
Query: 179 VNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAII 238
+E ++IL+ TPGR L + E ++ L LDEADR+LD GF+ + I+
Sbjct: 265 NQQIRELERGVDILVATPGR-LNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIV 323
Query: 239 SQL----PKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVP 294
Q+ P RQT LFSAT + IQ LA L + +L+V ++T +++++ +
Sbjct: 324 QQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVG-SSTDLIVQRVEFVHD 382
Query: 295 LDQK---LDMLWSFIKTHLQSK---TLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHG-RM 347
D++ +D+L + + Q K TLVF+ + K E + ++ G P +HG R
Sbjct: 383 SDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGAD-SLENWLCIN-GFPATTIHGDRS 440
Query: 348 KQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARY 407
+QER +A+ S + +L +TDVAARGLD V VV D P ++ Y+HR+GRT R
Sbjct: 441 QQEREVALRSFKTGRTPILVATDVAARGLDI-PHVAHVVNFDLPNDIDDYVHRIGRTGRA 499
Query: 408 KSVGKSVLFLLPSEVEMLERLKAAKVPVHLTKPRKELLQPVSGLLASLLIKY 459
+ G + F + M KP EL+Q + + L +Y
Sbjct: 500 GNSGLATAFFNDNNTTM-------------AKPLAELMQEANQEVPDWLTRY 538
>AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=645
Length = 645
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 181/341 (53%), Gaps = 17/341 (4%)
Query: 84 AKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPV---LEKLHRE-RWGPEDGV 139
A F A + IQ S P A+ RD++ AKTGSGKTL ++IP L+++H + R GP
Sbjct: 179 AGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT--- 235
Query: 140 GSIIISPTRELAGQL-FDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVNELNILICTPGR 198
+++SPTRELA Q+ + LK GK S L GG KE ++I++ TPGR
Sbjct: 236 -ILVLSPTRELATQIQVEALK-FGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGR 293
Query: 199 LLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPKRRQTFLFSATQTKSI 258
L + E Q+ LVLDEADR+LD GF+ + I++++P +RQT +++AT K +
Sbjct: 294 -LNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEV 352
Query: 259 QDLARLSLKDPEYLSVHE-ESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKTLVF 317
+ +A L +P +++ + + A ++ + I ++ P+++ + SK ++F
Sbjct: 353 RKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIF 412
Query: 318 LSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRS-VLFSTDVAARGL 376
C + + + L +HG Q R + ++F R+ VL +TDVAARGL
Sbjct: 413 ---CSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGL 469
Query: 377 DFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFL 417
D K + VV D P V Y+HR+GRT R + G + F
Sbjct: 470 DV-KDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFF 509
>AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:19429083-19431617
REVERSE LENGTH=760
Length = 760
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/353 (33%), Positives = 179/353 (50%), Gaps = 8/353 (2%)
Query: 57 TTFSRYAGVNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGK 116
+ F + V F S + + ++ + T IQ +LP L GRDV+G AKTGSGK
Sbjct: 219 SGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGK 278
Query: 117 TLAFIIP-VLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGG 175
T AF++P ++ + + ++G +I +PTRELA Q+F K K +G + GG
Sbjct: 279 TAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGG 338
Query: 176 RKDVNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLN 235
KE I++ TPGRL+ M + + LVLDEADR+ D GF+ +
Sbjct: 339 MSKHEQFKELKAGCEIVVATPGRLID-MLKMKALTMMRASYLVLDEADRMFDLGFEPQVR 397
Query: 236 AIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPL 295
+I+ Q+ RQT LFSAT ++ LAR L DP ++V E V + Q+V ++P
Sbjct: 398 SIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGE--VGMANEDITQVVNVIPS 455
Query: 296 D-QKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMA 354
D +KL L + + ++ +S K EA L+ + LHG Q RM
Sbjct: 456 DAEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLN-SFKVAALHGDKDQASRME 514
Query: 355 IYSEFCEK-RSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTAR 406
+F VL +TDVAARGLD K++ VV D +++ ++HR+GRT R
Sbjct: 515 TLQKFKSGVHHVLIATDVAARGLDI-KSLKTVVNYDIAKDMDMHVHRIGRTGR 566
>AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26870262-26872152 REVERSE LENGTH=465
Length = 465
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 166/320 (51%), Gaps = 37/320 (11%)
Query: 67 RFSHL--PLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPV 124
RFS L PLS+ I+ L + F T +Q ++P +DV+ A TGSGKTLAF++P
Sbjct: 16 RFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPF 75
Query: 125 LEKLHRERWGPED--GVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNME 182
+E + R P V +IISPTREL+ Q+ V +AV L ++V +
Sbjct: 76 IEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVR--------LDFAKCREVEAD 127
Query: 183 KERVNE--LNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQ 240
+ E N+LI TPGRL M D +++L+LDEADR+LD GF+K +N IIS+
Sbjct: 128 MNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISR 187
Query: 241 LPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLD 300
LPK+R+T LFSATQT+++ DLA+ L++P YL DQK
Sbjct: 188 LPKQRRTGLFSATQTQAVADLAKAGLRNP-YLKCEA-------------------DQKSS 227
Query: 301 MLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHP--GIPLKCLHGRMKQERRMAIYSE 358
L + + K +VF +C V + K+ I HG+M Q+ R +
Sbjct: 228 QLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALAS 287
Query: 359 FCEKRS-VLFSTDVAARGLD 377
F E S VL TDVAARGLD
Sbjct: 288 FTEASSGVLLCTDVAARGLD 307
>AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 169 bits (428), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 117/368 (31%), Positives = 194/368 (52%), Gaps = 25/368 (6%)
Query: 53 RIDDTTFSRYAGVNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKT 112
R +D T ++ N F L ++ + G+ + F + IQ S+P AL GRD+L AK
Sbjct: 121 RTEDVTATK---GNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKN 177
Query: 113 GSGKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLL 172
G+GKT AF IPVLEK+ ++ + + ++II PTRELA Q V K +GK+ +
Sbjct: 178 GTGKTAAFCIPVLEKIDQD----NNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVT 233
Query: 173 IGGRKDVNMEKERVNELNILICTPGRLLQHMDETPNF--DCSQMQVLVLDEADRILDSGF 230
GG + +++L+ TPGR+L + DCS VLV+DEAD++L F
Sbjct: 234 TGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCS---VLVMDEADKLLSQEF 290
Query: 231 KKDLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIV 290
+ + +IS LP+ RQ +FSAT +++D L +P +++ +E T + Q
Sbjct: 291 QPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDE---LTLKGITQFY 347
Query: 291 MIVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQE 350
V QK+ L + +++++F +S +V+ + + +L G +H +M Q+
Sbjct: 348 AFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQD 405
Query: 351 RRMAIYSEF----CEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTAR 406
R ++ +F C L TD+ RG+D +AV+ V+ D P+N +Y+HRVGR+ R
Sbjct: 406 HRNRVFHDFRNGACRN---LVCTDLFTRGIDI-QAVNVVINFDFPKNAETYLHRVGRSGR 461
Query: 407 YKSVGKSV 414
+ +G +V
Sbjct: 462 FGHLGLAV 469
>AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 169 bits (428), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 117/368 (31%), Positives = 194/368 (52%), Gaps = 25/368 (6%)
Query: 53 RIDDTTFSRYAGVNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKT 112
R +D T ++ N F L ++ + G+ + F + IQ S+P AL GRD+L AK
Sbjct: 121 RTEDVTATK---GNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKN 177
Query: 113 GSGKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLL 172
G+GKT AF IPVLEK+ ++ + + ++II PTRELA Q V K +GK+ +
Sbjct: 178 GTGKTAAFCIPVLEKIDQD----NNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVT 233
Query: 173 IGGRKDVNMEKERVNELNILICTPGRLLQHMDETPNF--DCSQMQVLVLDEADRILDSGF 230
GG + +++L+ TPGR+L + DCS VLV+DEAD++L F
Sbjct: 234 TGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCS---VLVMDEADKLLSQEF 290
Query: 231 KKDLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIV 290
+ + +IS LP+ RQ +FSAT +++D L +P +++ +E T + Q
Sbjct: 291 QPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDE---LTLKGITQFY 347
Query: 291 MIVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQE 350
V QK+ L + +++++F +S +V+ + + +L G +H +M Q+
Sbjct: 348 AFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQD 405
Query: 351 RRMAIYSEF----CEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTAR 406
R ++ +F C L TD+ RG+D +AV+ V+ D P+N +Y+HRVGR+ R
Sbjct: 406 HRNRVFHDFRNGACRN---LVCTDLFTRGIDI-QAVNVVINFDFPKNAETYLHRVGRSGR 461
Query: 407 YKSVGKSV 414
+ +G +V
Sbjct: 462 FGHLGLAV 469
>AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7285342-7288842
FORWARD LENGTH=1166
Length = 1166
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/361 (32%), Positives = 184/361 (50%), Gaps = 19/361 (5%)
Query: 67 RFSH-LPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVL 125
+F H L+ K +D ++ + IQ +LP + GRD +G AKTGSGKTL F++P+L
Sbjct: 529 KFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPML 588
Query: 126 EKLHRERWGPEDGVGSI--IISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEK 183
+ +++ E G G I +++PTREL Q+ ++ K G + GG
Sbjct: 589 RHI-KDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQIS 647
Query: 184 ERVNELNILICTPGRLLQHMDETPN--FDCSQMQVLVLDEADRILDSGFKKDLNAIISQL 241
E I++CTPGR++ + + + ++ LV+DEADR+ D GF+ + II +
Sbjct: 648 ELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNI 707
Query: 242 PKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVP-LDQKLD 300
RQT LFSAT + ++ LAR L P + V SV + Q+V + P D+ L
Sbjct: 708 RPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKD--ITQLVEVRPESDRFLR 765
Query: 301 MLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEF- 359
+L + + K LVF+ S ++ ++ + P LHG Q R + S+F
Sbjct: 766 LLELLGEWSEKGKILVFVQSQEKCDALYRDM--IKSSYPCLSLHGGKDQTDRESTISDFK 823
Query: 360 ---CEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLF 416
C ++L +T VAARGLD K ++ VV D P + Y+HRVGRT R G +V F
Sbjct: 824 NDVC---NLLIATSVAARGLDV-KELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTF 879
Query: 417 L 417
+
Sbjct: 880 I 880
>AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7286356-7288842
FORWARD LENGTH=828
Length = 828
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 120/361 (33%), Positives = 184/361 (50%), Gaps = 19/361 (5%)
Query: 67 RFSH-LPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVL 125
+F H L+ K +D ++ + IQ +LP + GRD +G AKTGSGKTL F++P+L
Sbjct: 191 KFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPML 250
Query: 126 EKLHRERWGPEDGVGSI--IISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEK 183
+ +++ E G G I +++PTREL Q+ ++ K G + GG
Sbjct: 251 RHI-KDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQIS 309
Query: 184 ERVNELNILICTPGRLLQHMDETPN--FDCSQMQVLVLDEADRILDSGFKKDLNAIISQL 241
E I++CTPGR++ + + + ++ LV+DEADR+ D GF+ + II +
Sbjct: 310 ELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNI 369
Query: 242 PKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVP-LDQKLD 300
RQT LFSAT + ++ LAR L P + V SV + Q+V + P D+ L
Sbjct: 370 RPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKD--ITQLVEVRPESDRFLR 427
Query: 301 MLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEF- 359
+L + + K LVF+ S ++ ++ K P LHG Q R + S+F
Sbjct: 428 LLELLGEWSEKGKILVFVQSQEKCDALYRDMIK--SSYPCLSLHGGKDQTDRESTISDFK 485
Query: 360 ---CEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLF 416
C ++L +T VAARGLD K ++ VV D P + Y+HRVGRT R G +V F
Sbjct: 486 NDVC---NLLIATSVAARGLDV-KELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTF 541
Query: 417 L 417
+
Sbjct: 542 I 542
>AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/380 (34%), Positives = 192/380 (50%), Gaps = 22/380 (5%)
Query: 65 VNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPV 124
VN F+ + L +R K+V T +QR ++P L RD++ A+TGSGKT AF P+
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 125 LEKL----HRERWGPEDGVG--SIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKD 178
+ + H ER V ++I+SPTRELA Q+ D K G + GG
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 179 VNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAII 238
+E +IL+ TPGR L + E ++ L LDEADR+LD GF+ + I+
Sbjct: 270 HQQLRELERGCDILVATPGR-LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIV 328
Query: 239 SQ--LPKR--RQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVP 294
Q +P R RQT LFSAT IQ LA + + +L+V V ++ L+ Q V V
Sbjct: 329 EQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGR--VGSSTDLITQRVEFVQ 386
Query: 295 LDQK----LDMLWSFIKTH-LQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHG-RMK 348
K +D+L + +T QS TLVF+ + K+ E + ++ P +HG R +
Sbjct: 387 ESDKRSHLMDLLHAQRETQDKQSLTLVFVET-KRGADTLENWLCMNE-FPATSIHGDRTQ 444
Query: 349 QERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYK 408
QER +A+ S + +L +TDVAARGLD V VV D P ++ Y+HR+GRT R
Sbjct: 445 QEREVALRSFKTGRTPILVATDVAARGLDIPH-VAHVVNFDLPNDIDDYVHRIGRTGRAG 503
Query: 409 SVGKSVLFLLPSEVEMLERL 428
G + F + ++ L
Sbjct: 504 KSGIATAFFNENNAQLARSL 523
>AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/380 (34%), Positives = 192/380 (50%), Gaps = 22/380 (5%)
Query: 65 VNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPV 124
VN F+ + L +R K+V T +QR ++P L RD++ A+TGSGKT AF P+
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 125 LEKL----HRERWGPEDGVG--SIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKD 178
+ + H ER V ++I+SPTRELA Q+ D K G + GG
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 179 VNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAII 238
+E +IL+ TPGR L + E ++ L LDEADR+LD GF+ + I+
Sbjct: 270 HQQLRELERGCDILVATPGR-LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIV 328
Query: 239 SQ--LPKR--RQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVP 294
Q +P R RQT LFSAT IQ LA + + +L+V V ++ L+ Q V V
Sbjct: 329 EQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGR--VGSSTDLITQRVEFVQ 386
Query: 295 LDQK----LDMLWSFIKTH-LQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHG-RMK 348
K +D+L + +T QS TLVF+ + K+ E + ++ P +HG R +
Sbjct: 387 ESDKRSHLMDLLHAQRETQDKQSLTLVFVET-KRGADTLENWLCMNE-FPATSIHGDRTQ 444
Query: 349 QERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYK 408
QER +A+ S + +L +TDVAARGLD V VV D P ++ Y+HR+GRT R
Sbjct: 445 QEREVALRSFKTGRTPILVATDVAARGLDIPH-VAHVVNFDLPNDIDDYVHRIGRTGRAG 503
Query: 409 SVGKSVLFLLPSEVEMLERL 428
G + F + ++ L
Sbjct: 504 KSGIATAFFNENNAQLARSL 523
>AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/380 (34%), Positives = 192/380 (50%), Gaps = 22/380 (5%)
Query: 65 VNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPV 124
VN F+ + L +R K+V T +QR ++P L RD++ A+TGSGKT AF P+
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 125 LEKL----HRERWGPEDGVG--SIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKD 178
+ + H ER V ++I+SPTRELA Q+ D K G + GG
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269
Query: 179 VNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAII 238
+E +IL+ TPGR L + E ++ L LDEADR+LD GF+ + I+
Sbjct: 270 HQQLRELERGCDILVATPGR-LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIV 328
Query: 239 SQ--LPKR--RQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVP 294
Q +P R RQT LFSAT IQ LA + + +L+V V ++ L+ Q V V
Sbjct: 329 EQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGR--VGSSTDLITQRVEFVQ 386
Query: 295 LDQK----LDMLWSFIKTH-LQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHG-RMK 348
K +D+L + +T QS TLVF+ + K+ E + ++ P +HG R +
Sbjct: 387 ESDKRSHLMDLLHAQRETQDKQSLTLVFVET-KRGADTLENWLCMNE-FPATSIHGDRTQ 444
Query: 349 QERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYK 408
QER +A+ S + +L +TDVAARGLD V VV D P ++ Y+HR+GRT R
Sbjct: 445 QEREVALRSFKTGRTPILVATDVAARGLDIPH-VAHVVNFDLPNDIDDYVHRIGRTGRAG 503
Query: 409 SVGKSVLFLLPSEVEMLERL 428
G + F + ++ L
Sbjct: 504 KSGIATAFFNENNAQLARSL 523
>AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25319798-25322071
REVERSE LENGTH=484
Length = 484
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 167/298 (56%), Gaps = 15/298 (5%)
Query: 86 FVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHRE-RWGPEDGVGSIII 144
F T IQ P AL GRD++G A+TGSGKTLA+++P L + + R G +DG +I+
Sbjct: 185 FTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLIL 244
Query: 145 SPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVNELNILICTPGRLLQHMD 204
+PTRELA Q+ + + G G + + GG ++ + I+I TPGRL+ M
Sbjct: 245 APTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI-DML 303
Query: 205 ETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPKRRQTFLFSATQTKSIQDLARL 264
E + + ++ LVLDEADR+LD GF+ + I+SQ+ RQT L+SAT + ++ LAR
Sbjct: 304 ECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQ 363
Query: 265 SLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQ-SKTLVFLSS--- 320
L+DP + + A + + Q++ IVP +K + L + +K + SK L+F+ +
Sbjct: 364 FLRDPYKAIIGSTDLKANQS-INQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRG 422
Query: 321 CKQVKFVFEAFKKLH-PGIPLKCLHGRMKQERRMAIYSEFCEKRS-VLFSTDVAARGL 376
C QV ++L G P +HG Q R + +EF RS ++ +TDVAARGL
Sbjct: 423 CDQVT------RQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGL 474
>AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265679-14267880
REVERSE LENGTH=733
Length = 733
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 186/379 (49%), Gaps = 28/379 (7%)
Query: 73 LSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHR-- 130
L+ + + + A + + IQ A++P L RDV+G A+TGSGKT AF++P+L + R
Sbjct: 320 LTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLP 379
Query: 131 --ERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVNE 188
+G +++++PTRELA Q+ + Y GF ++GG+ +
Sbjct: 380 PMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQG 439
Query: 189 LNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPKR---- 244
I+I TPGRL+ ++ +Q +VLDEADR++D GF+ + ++ +P
Sbjct: 440 CEIVIATPGRLIDCLERRYAV-LNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKP 498
Query: 245 -------------RQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVM 291
R T++FSAT ++ LAR L++P +++ + T L+ Q V+
Sbjct: 499 ENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIG--TAGKTTDLISQHVI 556
Query: 292 IVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQER 351
++ +K L + + +VF+++ K + + K G + LHG QE+
Sbjct: 557 MMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDK--AGYRVTTLHGGKSQEQ 614
Query: 352 RMAIYSEFCEKR-SVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSV 410
R F KR +VL +TDV RG+D V V+ D P+++ Y HR+GRT R
Sbjct: 615 REISLEGFRAKRYNVLVATDVVGRGIDIPD-VAHVINYDMPKHIEMYTHRIGRTGRAGKS 673
Query: 411 GKSVLFLLPSEVEMLERLK 429
G + FL + E+ LK
Sbjct: 674 GVATSFLTLHDTEVFYDLK 692
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD LENGTH=591
Length = 591
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 196/397 (49%), Gaps = 27/397 (6%)
Query: 65 VNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIP- 123
+ F + + +D L++ V T IQ LP L GRD++G A TGSGKTL F++P
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 124 VLEKLHRERWGP---EDGVGSIIISPTRELAGQLFDVLKAV------GKYHGFSAGLLIG 174
++ L E P +G +I+ P+RELA Q ++V++ Y + L IG
Sbjct: 205 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 264
Query: 175 GRKDVNMEKERVNE-LNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKD 233
G D+ + E V ++I++ TPGRL + M + L LDEADR++D GF+ D
Sbjct: 265 G-IDMRSQLEVVKRGVHIVVATPGRL-KDMLAKKKMSLDACRYLTLDEADRLVDLGFEDD 322
Query: 234 LNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIV 293
+ + +RQT LFSAT IQ AR +L P ++V A +++++ +
Sbjct: 323 IREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAG-AANLDVIQEVEYVK 381
Query: 294 PLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQE-RR 352
+ + +L KT L+F + V + E L G+ +HG QE R
Sbjct: 382 QEAKIVYLLECLQKT--SPPVLIFCENKADVDDIHEYL--LLKGVEAVAIHGGKDQEDRE 437
Query: 353 MAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGK 412
AI S K+ VL +TDVA++GLDF + V+ D P + +Y+HR+GRT R G
Sbjct: 438 YAISSFKAGKKDVLVATDVASKGLDFPD-IQHVINYDMPAEIENYVHRIGRTGRCGKTGI 496
Query: 413 SVLFLLPSEVE-MLERLKAAKVPVHLTKPRKELLQPV 448
+ F+ ++ E L LK HL + K+ + PV
Sbjct: 497 ATTFINKNQSETTLLDLK------HLLQEAKQRIPPV 527
>AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2949152-2952205
REVERSE LENGTH=989
Length = 989
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 176/356 (49%), Gaps = 41/356 (11%)
Query: 68 FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEK 127
+ L+ K +D L+ + IQ +LP + GRD +G AKTGSGKTL F++P+L
Sbjct: 398 WHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 457
Query: 128 LHRERWGPEDGVGSI--IISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKER 185
+ +++ E G G I +++PTREL Q++ ++ K G + GG E
Sbjct: 458 I-KDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISEL 516
Query: 186 VNELNILICTPGRLLQHMDETPN--FDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPK 243
I++CTPGR++ + + + ++ LV+DEADR+ D GF+ + I+ +
Sbjct: 517 KRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 576
Query: 244 RRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLW 303
RQT LFSAT + ++ LAR L P + V SV + Q+V I P ++ L
Sbjct: 577 DRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKD--ITQLVEIRPESERFSRLL 634
Query: 304 SFI-KTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIY-SEFCE 361
+ + + + K LVF+ S QE+ ++ + S+ C
Sbjct: 635 ELLGEWYEKGKVLVFVRS----------------------------QEKSISDFKSDVC- 665
Query: 362 KRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFL 417
++L +T VAARGLD K ++ VV D P + Y+HRVGRT R G +V F+
Sbjct: 666 --NLLIATSVAARGLDV-KELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFI 718
>AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 115/359 (32%), Positives = 183/359 (50%), Gaps = 30/359 (8%)
Query: 66 NRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVL 125
N F L + + G+ + F + IQ S+P AL G D+L AK G+GKT AF IPVL
Sbjct: 124 NEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVL 183
Query: 126 EKLHRERWGPEDGV-GSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGG---RKDVNM 181
EK+ P + V ++I+ PTRELA Q V K + KY + GG R D+
Sbjct: 184 EKID-----PNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMR 238
Query: 182 EKERVNELNILICTPGRLLQHMDETPNFDC--SQMQVLVLDEADRILDSGFKKDLNAIIS 239
+ V ++L+ TPGR+L D T C +LV+DEAD++L + F+ L +I
Sbjct: 239 LHQPV---HLLVGTPGRIL---DLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQ 292
Query: 240 QLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKL 299
LP+ RQ +FSAT +++ L+ P +++ ++ T + Q V QK+
Sbjct: 293 FLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQ---LTLMGVTQYYAFVEERQKV 349
Query: 300 DMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEF 359
L + +++++F +S +V+ + + +L G +H +M Q+ R ++ EF
Sbjct: 350 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMVQDHRNRVFHEF 407
Query: 360 ----CEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSV 414
C L TD+ RG+D +AV+ V+ D P SY+HRVGR+ R+ +G +V
Sbjct: 408 RNGACRN---LVCTDLFTRGIDI-QAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAV 462
>AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 115/359 (32%), Positives = 183/359 (50%), Gaps = 30/359 (8%)
Query: 66 NRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVL 125
N F L + + G+ + F + IQ S+P AL G D+L AK G+GKT AF IPVL
Sbjct: 124 NEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVL 183
Query: 126 EKLHRERWGPEDGV-GSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGG---RKDVNM 181
EK+ P + V ++I+ PTRELA Q V K + KY + GG R D+
Sbjct: 184 EKID-----PNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMR 238
Query: 182 EKERVNELNILICTPGRLLQHMDETPNFDC--SQMQVLVLDEADRILDSGFKKDLNAIIS 239
+ V ++L+ TPGR+L D T C +LV+DEAD++L + F+ L +I
Sbjct: 239 LHQPV---HLLVGTPGRIL---DLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQ 292
Query: 240 QLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKL 299
LP+ RQ +FSAT +++ L+ P +++ ++ T + Q V QK+
Sbjct: 293 FLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQ---LTLMGVTQYYAFVEERQKV 349
Query: 300 DMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEF 359
L + +++++F +S +V+ + + +L G +H +M Q+ R ++ EF
Sbjct: 350 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMVQDHRNRVFHEF 407
Query: 360 ----CEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSV 414
C L TD+ RG+D +AV+ V+ D P SY+HRVGR+ R+ +G +V
Sbjct: 408 RNGACRN---LVCTDLFTRGIDI-QAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAV 462
>AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:18859836-18862318 FORWARD LENGTH=528
Length = 528
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 182/359 (50%), Gaps = 30/359 (8%)
Query: 66 NRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVL 125
N F L + + G+ + F + IQ S+P AL G D+L AK G+GKT AF IP L
Sbjct: 154 NEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTL 213
Query: 126 EKLHRERWGPEDGV-GSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGG---RKDVNM 181
EK+ PE+ V ++I+ PTRELA Q V K + KY + GG R D+
Sbjct: 214 EKID-----PENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMR 268
Query: 182 EKERVNELNILICTPGRLLQHMDETPNF--DCSQMQVLVLDEADRILDSGFKKDLNAIIS 239
+ V ++L+ TPGR+L + DC+ +LV+DEAD++L F+ + +I
Sbjct: 269 LYQPV---HLLVGTPGRILDLAKKGVCVLKDCA---MLVMDEADKLLSVEFQPSIEELIQ 322
Query: 240 QLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKL 299
LP+ RQ +FSAT +++ LK P +++ ++ T Q V QK+
Sbjct: 323 FLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLMDQLTLMGVT---QYYAFVEERQKV 379
Query: 300 DMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEF 359
L + +++++F +S +V+ + + +L G +H +M Q+ R ++ +F
Sbjct: 380 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMVQDHRNRVFHDF 437
Query: 360 ----CEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSV 414
C L TD+ RG+D +AV+ V+ D P SY+HRVGR+ R+ +G +V
Sbjct: 438 RNGACRN---LVCTDLFTRGIDI-QAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAV 492
>AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=748
Length = 748
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 191/375 (50%), Gaps = 26/375 (6%)
Query: 68 FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEK 127
S L L ++ + L + IQRA L AL GRD++ AKTG+GKTLAF IP++++
Sbjct: 104 ISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKR 163
Query: 128 LHRE--------RWG--PEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRK 177
L E R G P+ ++++PTRELA Q+ +K Y S + GG
Sbjct: 164 LTEEAGDYTAFRRSGRLPK----FLVLAPTRELAKQVEKEIKESAPY--LSTVCVYGGVS 217
Query: 178 DVNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAI 237
+ +++++ TPGR++ + E + +++ LVLDEAD++L GF++ + +I
Sbjct: 218 YTIQQSALTRGVDVVVGTPGRIID-LIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESI 276
Query: 238 ISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQ 297
+ LP +RQ+ LFSAT ++ LAR L +P + + + +K +
Sbjct: 277 LENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTS 336
Query: 298 KLDMLWSFIKTHLQ-SKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIY 356
K +L I + + KT+VF + + V A L I + LHG + Q +R
Sbjct: 337 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLA---LSNSIATEALHGDISQHQRERTL 393
Query: 357 SEFCE-KRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVL 415
+ F + K +VL +TDVA+RGLD VD V+ + P + +++HR GRT R G ++L
Sbjct: 394 NAFRQGKFTVLVATDVASRGLDIPN-VDLVIHYELPNDPETFVHRSGRTGRAGKEGSAIL 452
Query: 416 FLLPSE---VEMLER 427
S+ V LER
Sbjct: 453 MHTSSQKRTVRSLER 467
>AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=747
Length = 747
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 191/375 (50%), Gaps = 26/375 (6%)
Query: 68 FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEK 127
S L L ++ + L + IQRA L AL GRD++ AKTG+GKTLAF IP++++
Sbjct: 104 ISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKR 163
Query: 128 LHRE--------RWG--PEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRK 177
L E R G P+ ++++PTRELA Q+ +K Y S + GG
Sbjct: 164 LTEEAGDYTAFRRSGRLPK----FLVLAPTRELAKQVEKEIKESAPY--LSTVCVYGGVS 217
Query: 178 DVNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAI 237
+ +++++ TPGR++ + E + +++ LVLDEAD++L GF++ + +I
Sbjct: 218 YTIQQSALTRGVDVVVGTPGRIID-LIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESI 276
Query: 238 ISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQ 297
+ LP +RQ+ LFSAT ++ LAR L +P + + + +K +
Sbjct: 277 LENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTS 336
Query: 298 KLDMLWSFIKTHLQ-SKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIY 356
K +L I + + KT+VF + + V A L I + LHG + Q +R
Sbjct: 337 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLA---LSNSIATEALHGDISQHQRERTL 393
Query: 357 SEFCE-KRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVL 415
+ F + K +VL +TDVA+RGLD VD V+ + P + +++HR GRT R G ++L
Sbjct: 394 NAFRQGKFTVLVATDVASRGLDIPN-VDLVIHYELPNDPETFVHRSGRTGRAGKEGSAIL 452
Query: 416 FLLPSE---VEMLER 427
S+ V LER
Sbjct: 453 MHTSSQKRTVRSLER 467
>AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWARD
LENGTH=621
Length = 621
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 198/386 (51%), Gaps = 39/386 (10%)
Query: 65 VNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPV 124
V F L LS++ + L++ T+IQ +P + + V+ + TGSGKTLA+++P+
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 125 LEKLHRERWGPEDGVG---------SIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGG 175
++ L RE E +G ++++ PTREL+ Q++ V K++ + F + L+ GG
Sbjct: 171 VQ-LMRE---DEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGG 226
Query: 176 RKDVNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLN 235
+ E N +++++ TPGR+LQH++E N + LVLDEAD + D GF ++
Sbjct: 227 SRIRPQEDSLNNAIDMVVGTPGRILQHIEEG-NMVYGDIAYLVLDEADTMFDRGFGPEIR 285
Query: 236 AIISQLPKRR--------QTFLFSATQTKSIQDLARLSLKDPEYL---SVHEESVTATPT 284
++ L +R QT L +AT T ++Q L + E+L ++H++ A
Sbjct: 286 KFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHD 345
Query: 285 LLKQIVMIVPLDQKLDMLWSFIKTHLQ--SKTLVFLSSCKQVKFVFEAFKKLHPGIPLKC 342
+K + + KL+ L ++ L SK +VF ++ + V + I
Sbjct: 346 FIK----LSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQ--ISTVN 399
Query: 343 LHGRMKQERRMAIYSEFCEKRS---VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIH 399
HG + E+R+ +F ++ L TD+AARGLD + VD VV D P+N Y+H
Sbjct: 400 YHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDLD--VDHVVMFDFPKNSIDYLH 457
Query: 400 RVGRTARYKSVGKSVLFLLPSEVEML 425
R GRTAR + GK V L+ + +ML
Sbjct: 458 RTGRTARMGAKGK-VTSLVSRKDQML 482
>AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479921-11482707 FORWARD LENGTH=537
Length = 537
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 186/373 (49%), Gaps = 23/373 (6%)
Query: 60 SRYAGVNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLA 119
++YA + F+ L + +D + F + IQ + P L GRD++G AKTGSGKTLA
Sbjct: 110 AKYAALKTFAESNLPENVLDCCK--TFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLA 167
Query: 120 FIIPVLEKLHRERWGPEDGVGS-------IIISPTRELAGQLFDVLKAVGKYHGFSAGLL 172
F IP + +H + + G GS +++SPTRELA Q+ DVL+ G+ G + +
Sbjct: 168 FGIPAI--MHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICV 225
Query: 173 IGGRKDVNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKK 232
GG + ++I+I TPGRL + + E+ S + +VLDEADR+LD GF++
Sbjct: 226 YGGSSKGPQISAIRSGVDIVIGTPGRL-RDLIESNVLRLSDVSFVVLDEADRMLDMGFEE 284
Query: 233 DLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESV-TATPTLLKQIVM 291
+ I+S K RQ +FSAT + LA+ DP + V SV A + QI+
Sbjct: 285 PVRFILSNTNKVRQMVMFSATWPLDVHKLAQ-EFMDPNPIKVIIGSVDLAANHDVMQIIE 343
Query: 292 IV---PLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFV-FEAFKKLHPGIPLKCLHGRM 347
++ DQ+L L K H K V + + +V+ E F + G +HG
Sbjct: 344 VLDERARDQRLIALLE--KYHKSQKNRVLVFALYKVEAERLERFLQ-QRGWKAVSIHGNK 400
Query: 348 KQERRMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTAR 406
Q R S F E +L +TDVAARGLD V+ V+ P Y+HR+GRT R
Sbjct: 401 AQSERTRSLSLFKEGSCPLLVATDVAARGLDIPD-VEVVINYTFPLTTEDYVHRIGRTGR 459
Query: 407 YKSVGKSVLFLLP 419
G + F P
Sbjct: 460 AGKKGVAHTFFTP 472
>AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887382-7889806 FORWARD LENGTH=610
Length = 610
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 182/357 (50%), Gaps = 19/357 (5%)
Query: 68 FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEK 127
+ L +S + + L+ + IQ+A L A+ GRD++G A+TG+GKTLAF IP+++K
Sbjct: 118 IADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDK 177
Query: 128 LHRERWGPEDGVG----SIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEK 183
+ + + + G G ++++PTRELA Q+ + L GG +
Sbjct: 178 IIK--FNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAP--SLDTICLYGGTPIGQQMR 233
Query: 184 ERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPK 243
E +++ + TPGR++ M + S++Q +VLDEAD++L GF +D+ I+ +LP
Sbjct: 234 ELNYGIDVAVGTPGRIIDLMKRGA-LNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPA 292
Query: 244 RRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLW 303
+RQ+ +FSAT I+ L + L +P + + +S + + + ++
Sbjct: 293 KRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIG 352
Query: 304 SFIKTHLQ-SKTLVFLSSCKQVKFVFEAFKKLHPGIPLKC--LHGRMKQERRMAIYSEFC 360
+K H + K +VF + + + K + KC LHG + Q +R + F
Sbjct: 353 PLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSY-----KCEALHGDISQAQRERTLAGFR 407
Query: 361 EKR-SVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLF 416
+ S+L +TDVAARGLD VD V+ + P N +++HR GRT R G ++L
Sbjct: 408 DGNFSILVATDVAARGLDVPN-VDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILI 463
>AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:16069669-16071405 REVERSE LENGTH=542
Length = 542
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 124/399 (31%), Positives = 196/399 (49%), Gaps = 31/399 (7%)
Query: 65 VNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIP- 123
+ F + + L+D + T IQ LP L GRD++G A TGSGKTL F++P
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 124 VLEKLHRERWGP---EDGVGSIIISPTRELAGQLFDVLKAV------GKYHGFSAGLLIG 174
++ L E P +G +++I P+RELA Q +DV++ Y + L IG
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIG 215
Query: 175 G---RKDVNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFK 231
G R +++ K+ V+ I++ TPGRL + + ++L LDEADR++D GF+
Sbjct: 216 GVDMRSQLDVVKKGVH---IVVATPGRL-KDILAKKKMSLDACRLLTLDEADRLVDLGFE 271
Query: 232 KDLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVM 291
D+ + +RQT LFSAT IQ A +L P ++V A +++++
Sbjct: 272 DDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAG-AANLDVIQEVEY 330
Query: 292 IVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQER 351
+ + + +L KT L+F + V + E L G+ +HG QE
Sbjct: 331 VKQEAKIVYLLECLQKT--TPPVLIFCENKADVDDIHEYL--LLKGVEAVAIHGGKDQED 386
Query: 352 RMAIYSEF-CEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSV 410
R S F K+ VL +TDVA++GLDF + V+ D P + +Y+HR+GRT R
Sbjct: 387 RDYAISLFKAGKKDVLVATDVASKGLDFPD-IQHVINYDMPGEIENYVHRIGRTGRCGKT 445
Query: 411 GKSVLFLLPSEVEM-LERLKAAKVPVHLTKPRKELLQPV 448
G + F+ ++ E+ L LK HL + K+ + PV
Sbjct: 446 GIATTFINKNQSEITLLDLK------HLLQEAKQRIPPV 478
>AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA
helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
Length = 616
Score = 149 bits (375), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 189/371 (50%), Gaps = 22/371 (5%)
Query: 68 FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEK 127
S L +S + + L + IQ+A L A+ GRD++G A+TG+GKTLAF IP+++K
Sbjct: 106 ISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDK 165
Query: 128 LHRERWGPEDGVG----SIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEK 183
+ + + + G G ++++PTRELA Q+ + L GG +
Sbjct: 166 IIK--YNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAP--SLDTICLYGGTPIGQQMR 221
Query: 184 ERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPK 243
+ +++ + TPGR++ M + S++Q +VLDEAD++L GF +D+ I+ +LP+
Sbjct: 222 QLDYGVDVAVGTPGRVIDLMKRGA-LNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPE 280
Query: 244 RRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLW 303
+RQ+ +FSAT I+ L + L +P + + +S + +I + ++
Sbjct: 281 KRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIG 340
Query: 304 SFIKTHLQ-SKTLVFLSSCKQVKFVFEAFKKLHPGIPLKC--LHGRMKQERRMAIYSEFC 360
+ H + K +VF + + + A + KC LHG + Q +R + F
Sbjct: 341 PLVTEHAKGGKCIVFTQTKRDADRLSYALAR-----SFKCEALHGDISQSQRERTLAGFR 395
Query: 361 EKR-SVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLP 419
+ ++L +TDVAARGLD VD ++ + P N +++HR GRT R G ++L
Sbjct: 396 DGHFNILVATDVAARGLDVPN-VDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQ 454
Query: 420 SE---VEMLER 427
+ V+++ER
Sbjct: 455 DQSRAVKIIER 465
>AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288618 REVERSE LENGTH=655
Length = 655
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 181/349 (51%), Gaps = 26/349 (7%)
Query: 94 RASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHRE--------RWG--PEDGVGSII 143
RA L AL GRD++ AKTG+GKTLAF IP++++L E R G P+ ++
Sbjct: 37 RAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPK----FLV 92
Query: 144 ISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVNELNILICTPGRLLQHM 203
++PTRELA Q+ +K Y S + GG + +++++ TPGR++ +
Sbjct: 93 LAPTRELAKQVEKEIKESAPY--LSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIID-L 149
Query: 204 DETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPKRRQTFLFSATQTKSIQDLAR 263
E + +++ LVLDEAD++L GF++ + +I+ LP +RQ+ LFSAT ++ LAR
Sbjct: 150 IEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLAR 209
Query: 264 LSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQ-SKTLVFLSSCK 322
L +P + + + +K + K +L I + + KT+VF + +
Sbjct: 210 KYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKR 269
Query: 323 QVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCE-KRSVLFSTDVAARGLDFNKA 381
V A L I + LHG + Q +R + F + K +VL +TDVA+RGLD
Sbjct: 270 DADEVSLA---LSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPN- 325
Query: 382 VDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLPSE---VEMLER 427
VD V+ + P + +++HR GRT R G ++L S+ V LER
Sbjct: 326 VDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLER 374
>AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2980483-2983268
REVERSE LENGTH=541
Length = 541
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 183/353 (51%), Gaps = 18/353 (5%)
Query: 81 LRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHRERWGPEDGVG 140
L + F T IQR ++P L GR+ A TGSGKT AFI P+L KL R DG+
Sbjct: 156 LAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPS---TDGIR 212
Query: 141 SIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVNELNILICTPGRLL 200
++I+SP RELA Q K + K F L+ + V ++LI TP RL
Sbjct: 213 AVILSPARELAAQTAREGKKLIKGSNFHIRLMT--KPLVKTADFSKLWCDVLISTPMRLK 270
Query: 201 QHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQL--PKRRQTFLFSATQTKSI 258
+ + + D S+++ LVLDE+D++ + K ++ ++ P ++ LFSAT S+
Sbjct: 271 RAI-KAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRS-LFSATLPDSV 328
Query: 259 QDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKTLVFL 318
++LAR + D + + ++ TA+ T+ +++V + KL L L L+F+
Sbjct: 329 EELARSIMHDAVRVIIGRKN-TASETVKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFV 387
Query: 319 SSCKQVKFVFEAFK--KLHPGIPLKCLHGRM-KQERRMAIYSEFCEKRSVLFSTDVAARG 375
S ++ K +++ K + G+ +H + ER A+ ++ VL +TDV ARG
Sbjct: 388 QSKERAKELYDELKCENIRAGV----IHSDLPPGERENAVDQFRAGEKWVLIATDVIARG 443
Query: 376 LDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLPSEVEMLERL 428
+DF K ++ V+ D P++ ++YIHR+GR+ R G+++ F +V L +
Sbjct: 444 MDF-KGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNI 495
>AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) |
chr5:24980542-24983879 REVERSE LENGTH=671
Length = 671
Score = 142 bits (359), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 194/406 (47%), Gaps = 22/406 (5%)
Query: 66 NRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVL 125
N S +S + L+ A+ IQ ++ L G D++G A+TG GKTLAF++P+L
Sbjct: 96 NAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPIL 155
Query: 126 EKL------HRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDV 179
E L + + G +++ PTRELA Q+ A G G S+ L GG
Sbjct: 156 ESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYP 215
Query: 180 NMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIIS 239
E + ++I++ TPGR+ H+ E N D S +Q VLDEAD +L GF +D+ I+
Sbjct: 216 VQEGKLKRGVDIVVGTPGRIKDHI-ERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILG 274
Query: 240 QL--PKRRQTFLFSATQTKSIQDLARLSLK-DPEYLSVHEESVTATPTLLKQIVMIVPLD 296
++ + QT LFSAT +++++ LK D + + + ++ I +
Sbjct: 275 KVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKA 334
Query: 297 QKLDMLWSFIKTHLQ-SKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAI 355
++ I + +T++F + QV L G + LHG + Q +R
Sbjct: 335 AMARLIPDIISCYSSGGQTIIFAETKVQVS----ELSGLLDGS--RALHGEIPQSQREVT 388
Query: 356 YSEFCE-KRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSV 414
+ F K + L +T+VAARGLD N V ++Q + P V +YIHR GRT R + G +V
Sbjct: 389 LAGFRNGKFATLVATNVAARGLDIND-VQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAV 447
Query: 415 LFL--LPSEVEMLERLKAAKVPVHLTKPRKELLQPVSGLLASLLIK 458
S V +E+ K HL P+ + + G+ A+ +K
Sbjct: 448 TLYDSRKSSVSRIEKEAGIKFE-HLAAPQPDEIARSGGMEAAEKVK 492
>AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843084-9845002
REVERSE LENGTH=614
Length = 614
Score = 142 bits (358), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 111/358 (31%), Positives = 181/358 (50%), Gaps = 33/358 (9%)
Query: 96 SLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHR----ERWGPEDGVGSIIISPTRELA 151
++P L RDV+G + TGSGKT AF++P+L + R +G ++++ PTRELA
Sbjct: 232 TIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEGPYALVMVPTRELA 291
Query: 152 GQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVNE-LNILICTPGRLLQHMDETPNFD 210
Q+ + +Y GF A + I G + + + ++++ I+I TPGRLL + E
Sbjct: 292 HQIEEETVKFSRYLGFKA-VSITGWESIEKQALKLSQGCEIVIATPGRLLDCL-ERRYVV 349
Query: 211 CSQMQVLVLDEADRILDSGFKKDLNAIISQLPKR-----------------RQTFLFSAT 253
+Q LVLDEADR++D F+ ++ ++ +P R T++FSAT
Sbjct: 350 LNQCNYLVLDEADRMIDMDFEPQVSEVLDVMPCSNLKPEKEDEELEEKKIYRTTYMFSAT 409
Query: 254 QTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSK 313
S++ LAR L++P +++ E T + +Q++M D K L I K
Sbjct: 410 MLLSVERLARKFLRNPVVVTIGE----TTKFITQQVIMTKESD-KFSRLKKLIDDLGDDK 464
Query: 314 T-LVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKR-SVLFSTDV 371
T +VF+++ +V ++ + +K+ + LH QE+R EF +KR +VL +TDV
Sbjct: 465 TAIVFVNTRNKVDYIVKNLEKV-GRCRVTTLHAGKSQEQRDYSLEEFKKKRFNVLVTTDV 523
Query: 372 AARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLPSEVEMLERLK 429
RGLD V+ D P + Y HR+GRT R G + FL + ++ LK
Sbjct: 524 LGRGLDILDLAQ-VINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTLEDKDVFYGLK 580
>AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5738020-5743042
REVERSE LENGTH=826
Length = 826
Score = 139 bits (350), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 123/423 (29%), Positives = 193/423 (45%), Gaps = 82/423 (19%)
Query: 72 PLSKKTIDGLRDAKFVAMTDIQRASLP-HALCGRDVLGAAKTGSGKTLAFIIPVLEKLHR 130
PL K+I L F T IQ+A A G+DV+GAA+TGSGKTLAF +P+L++L
Sbjct: 199 PLLMKSIYRL---DFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLD 255
Query: 131 ER----------------WGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIG 174
ER + + + ++II+PTRELA Q+ + L+ K ++G
Sbjct: 256 EREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVG 315
Query: 175 GRKDVNMEKERVNELNILICTPGRLLQHMD--ETPNFDCSQMQVLVLDEADRILDSGFKK 232
G E+ + I++ TPGRL + M E + + VLDEADR+++ G +
Sbjct: 316 GMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFR 375
Query: 233 DLNAIISQLP------------------------KRRQTFLFSAT--------------- 253
+L +I+ LP K+RQTF+FSAT
Sbjct: 376 ELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGS 435
Query: 254 ---------QTKSIQDLA-RLSLKDPEYLSVHEESVTATPTLLKQI---VMIVPLDQKLD 300
+ SI+ L+ R ++D +V +T T L +I + +K
Sbjct: 436 SKSKQSSSGEVNSIEVLSERAGMRD----NVAIIDLTTTSILAPKIEESFIKCEEKEKDA 491
Query: 301 MLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEF- 359
L+ + H Q +T+VF +S ++ + K L G+ + L MKQ R+ F
Sbjct: 492 YLYYILSVHGQGRTIVFCTSVTDLRHISGLLKIL--GLDVCTLFSEMKQRARLKSIDRFR 549
Query: 360 CEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLP 419
+ +L +TD+ ARG+D K V ++ P + Y+HR GRTAR + G S+ + P
Sbjct: 550 ASENGILIATDLVARGIDI-KNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEP 608
Query: 420 SEV 422
+E
Sbjct: 609 NET 611
>AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863790-6866242 FORWARD LENGTH=408
Length = 408
Score = 139 bits (349), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 187/366 (51%), Gaps = 18/366 (4%)
Query: 65 VNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAF---I 121
+ F+ + + + + G+ + F + IQ+ ++ L GRDV+ A++G+GKT +
Sbjct: 34 ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV 93
Query: 122 IPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNM 181
V++ RE V ++I+SPTRELA Q ++A+G + A IGG
Sbjct: 94 CQVVDTSSRE-------VQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGED 146
Query: 182 EKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQL 241
++ + ++++ TPGR+ M + + +++L+LDE+D +L GFK + + L
Sbjct: 147 IRKLEHGVHVVSGTPGRVCD-MIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYL 205
Query: 242 PKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQ-KLD 300
P Q L SAT I ++ + +P + V + +T +KQ + V ++ K D
Sbjct: 206 PPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEG--IKQFFVAVEKEEWKFD 263
Query: 301 MLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFC 360
L T ++ ++F ++ ++V ++ E + + +HG M Q+ R AI +EF
Sbjct: 264 TLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRS--HNFTVSSMHGDMPQKERDAIMNEFR 321
Query: 361 EKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLP 419
S VL +TDV ARG+D + V V+ D P N YIHR+GR+ R+ G ++ F+
Sbjct: 322 SGDSRVLITTDVWARGIDVQQ-VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS 380
Query: 420 SEVEML 425
++++L
Sbjct: 381 DDIKIL 386
>AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=412
Length = 412
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 190/376 (50%), Gaps = 19/376 (5%)
Query: 56 DTTFSRYAGVNR-FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGS 114
D F+ Y V+ F + L + + G+ F + IQ+ + G DV+ A++G+
Sbjct: 28 DEFFTSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGT 87
Query: 115 GKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIG 174
GKT F VL++L + +++++PTRELA Q+ V++A+G Y G +G
Sbjct: 88 GKTATFCSGVLQQLDYALLQCQ----ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVG 143
Query: 175 GRKDVNMEKERVNE--LNILICTPGRLLQHMD-ETPNFDCSQMQVLVLDEADRILDSGFK 231
G E +R+ + +++++ TPGR+ + ++ DC +M VLDEAD +L GFK
Sbjct: 144 GTS--VREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKM--FVLDEADEMLSRGFK 199
Query: 232 KDLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQI-V 290
+ I LP + Q +FSAT ++ R + P + V + +T +KQ V
Sbjct: 200 DQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEG--IKQFYV 257
Query: 291 MIVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQE 350
+ D KL+ L +T +++++F+++ ++V ++ + + + HG M Q
Sbjct: 258 NVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTV--SATHGDMDQN 315
Query: 351 RRMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKS 409
R I EF S VL +TD+ ARG+D + V V+ D P +Y+HR+GR+ R+
Sbjct: 316 TRDIIMREFRSGSSRVLITTDLLARGIDVQQ-VSLVINFDLPTQPENYLHRIGRSGRFGR 374
Query: 410 VGKSVLFLLPSEVEML 425
G ++ F+ + ML
Sbjct: 375 KGVAINFVTLDDQRML 390
>AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3553334-3556646 FORWARD LENGTH=427
Length = 427
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 197/382 (51%), Gaps = 30/382 (7%)
Query: 62 YAGVNR--FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLA 119
Y G++ F L + + + D+ F +++Q +P A+ G DV+ AK+G GKT
Sbjct: 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99
Query: 120 FIIPVLEKLHRERWGPEDG-VGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKD 178
F++ L+++ P G V ++++ TRELA Q+ + Y + + G +
Sbjct: 100 FVLSTLQQIE-----PSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 154
Query: 179 VNMEKERV-NEL-NILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDS-GFKKDLN 235
+ + K+ + NE +I++ TPGR+L E + ++ +LDE D++L+S ++D+
Sbjct: 155 IKIHKDLLKNECPHIVVGTPGRVLALAREK-DLSLKNVRHFILDECDKMLESLDMRRDVQ 213
Query: 236 AIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPL 295
I P +Q +FSAT +K I+ + + ++DP + V +E+ L++ + + +
Sbjct: 214 EIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEM 273
Query: 296 DQ--KLDMLWSFIKTHLQSKTLVFLSSCKQV----KFVFEAFKKLHPGIPLKCLHGRMKQ 349
++ KL+ L + ++ ++F+ S + K + E P C+H M Q
Sbjct: 274 EKNRKLNDLLDALDF---NQVVIFVKSVSRAAELNKLLVEC------NFPSICIHSGMSQ 324
Query: 350 ERRMAIYSEFCE-KRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYK 408
E R+ Y F E + +L +TD+ RG+D + V+ V+ D P++ +Y+HRVGR R+
Sbjct: 325 EERLTRYKSFKEGHKRILVATDLVGRGIDIER-VNIVINYDMPDSADTYLHRVGRAGRFG 383
Query: 409 SVGKSVLFLL-PSEVEMLERLK 429
+ G ++ F+ S+ E+L +++
Sbjct: 384 TKGLAITFVASASDSEVLNQVQ 405
>AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=427
Length = 427
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 197/382 (51%), Gaps = 30/382 (7%)
Query: 62 YAGVNR--FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLA 119
Y G++ F L + + + D+ F +++Q +P A+ G DV+ AK+G GKT
Sbjct: 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99
Query: 120 FIIPVLEKLHRERWGPEDG-VGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKD 178
F++ L+++ P G V ++++ TRELA Q+ + Y + + G +
Sbjct: 100 FVLSTLQQIE-----PSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 154
Query: 179 VNMEKERV-NEL-NILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDS-GFKKDLN 235
+ + K+ + NE +I++ TPGR+L E + ++ +LDE D++L+S ++D+
Sbjct: 155 IKIHKDLLKNECPHIVVGTPGRVLALAREK-DLSLKNVRHFILDECDKMLESLDMRRDVQ 213
Query: 236 AIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPL 295
I P +Q +FSAT +K I+ + + ++DP + V +E+ L++ + + +
Sbjct: 214 EIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEM 273
Query: 296 DQ--KLDMLWSFIKTHLQSKTLVFLSSCKQV----KFVFEAFKKLHPGIPLKCLHGRMKQ 349
++ KL+ L + ++ ++F+ S + K + E P C+H M Q
Sbjct: 274 EKNRKLNDLLDALDF---NQVVIFVKSVSRAAELNKLLVEC------NFPSICIHSGMSQ 324
Query: 350 ERRMAIYSEFCE-KRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYK 408
E R+ Y F E + +L +TD+ RG+D + V+ V+ D P++ +Y+HRVGR R+
Sbjct: 325 EERLTRYKSFKEGHKRILVATDLVGRGIDIER-VNIVINYDMPDSADTYLHRVGRAGRFG 383
Query: 409 SVGKSVLFLL-PSEVEMLERLK 429
+ G ++ F+ S+ E+L +++
Sbjct: 384 TKGLAITFVASASDSEVLNQVQ 405
>AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:27378040-27379593 REVERSE LENGTH=414
Length = 414
Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 189/374 (50%), Gaps = 13/374 (3%)
Query: 55 DDTTFSRYAGV-NRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTG 113
++T ++ Y V + F + L + G+ F + IQ+ + G DV+ A++G
Sbjct: 29 EETFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSG 88
Query: 114 SGKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLI 173
+GKT F VL++L + +++++PTRELA Q+ V++A+G Y G A +
Sbjct: 89 TGKTATFCSGVLQQLDISLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKAQACV 144
Query: 174 GGRKDVNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKD 233
GG ++ + +++++ TPGR+ + + +++ VLDEAD +L GFK
Sbjct: 145 GGTSVREDQRVLQSGVHVVVGTPGRVFDLL-RRQSLRADAIKMFVLDEADEMLSRGFKDQ 203
Query: 234 LNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIV 293
+ I LP + Q +FSAT ++ R + P + V + +T +KQ + V
Sbjct: 204 IYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEG--IKQFYVNV 261
Query: 294 PLDQ-KLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERR 352
++ KL+ L +T +++++F+++ ++V ++ + + + HG M Q R
Sbjct: 262 DKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTV--SATHGDMDQNTR 319
Query: 353 MAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVG 411
I EF S VL +TD+ ARG+D + V V+ D P +Y+HR+GR+ R+ G
Sbjct: 320 DIIMREFRSGSSRVLITTDLLARGIDVQQ-VSLVINFDLPTQPENYLHRIGRSGRFGRKG 378
Query: 412 KSVLFLLPSEVEML 425
++ F+ + M+
Sbjct: 379 VAINFMTSEDERMM 392
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594128 REVERSE
LENGTH=412
Length = 412
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 190/375 (50%), Gaps = 17/375 (4%)
Query: 56 DTTFSRYAGVNR-FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGS 114
D F+ Y V+ F + L + + G+ F + IQ+ + G DV+ A++G+
Sbjct: 28 DEFFTSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGT 87
Query: 115 GKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIG 174
GKT F VL++L + +++++PTRELA Q+ V++A+G Y G +G
Sbjct: 88 GKTATFCSGVLQQLDFSLIQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVG 143
Query: 175 GRKDVNMEKERVNE--LNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKK 232
G E +R+ + +++++ TPGR+ M + + +++ VLDEAD +L GFK
Sbjct: 144 GTS--VREDQRILQAGVHVVVGTPGRVF-DMLKRQSLRADNIKMFVLDEADEMLSRGFKD 200
Query: 233 DLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMI 292
+ I LP + Q +FSAT ++ R + P + V + +T +KQ +
Sbjct: 201 QIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEG--IKQFYVN 258
Query: 293 VPLDQ-KLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQER 351
V ++ KL+ L +T +++++F+++ ++V ++ + + + HG M Q
Sbjct: 259 VEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTV--SATHGDMDQNT 316
Query: 352 RMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSV 410
R I EF S VL +TD+ ARG+D + V V+ D P +Y+HR+GR+ R+
Sbjct: 317 RDIIMREFRSGSSRVLITTDLLARGIDVQQ-VSLVINFDLPTQPENYLHRIGRSGRFGRK 375
Query: 411 GKSVLFLLPSEVEML 425
G ++ F+ + ML
Sbjct: 376 GVAINFVTRDDERML 390
>AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=407
Length = 407
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 189/377 (50%), Gaps = 26/377 (6%)
Query: 56 DTTFSRYAGVNR-FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALC-GRDVLGAAKTG 113
D F+ Y V+ F + L + + G + QR +P C G DV+ A++G
Sbjct: 28 DEFFTSYDEVHESFDAMGLQENLLRGFEKPSAIQ----QRGIVP--FCKGLDVIQQAQSG 81
Query: 114 SGKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLI 173
+GKT F VL++L + +++++PTRELA Q+ V++A+G Y G +
Sbjct: 82 TGKTATFCSGVLQQLDYALLQCQ----ALVLAPTRELAQQIEKVMRALGDYQGVKVHACV 137
Query: 174 GGRKDVNMEKERVNE--LNILICTPGRLLQHMD-ETPNFDCSQMQVLVLDEADRILDSGF 230
GG E +R+ + +++++ TPGR+ + ++ DC +M VLDEAD +L GF
Sbjct: 138 GGTS--VREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKM--FVLDEADEMLSRGF 193
Query: 231 KKDLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQI- 289
K + I LP + Q +FSAT ++ R + P + V + +T +KQ
Sbjct: 194 KDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEG--IKQFY 251
Query: 290 VMIVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQ 349
V + D KL+ L +T +++++F+++ ++V ++ + + + HG M Q
Sbjct: 252 VNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTV--SATHGDMDQ 309
Query: 350 ERRMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYK 408
R I EF S VL +TD+ ARG+D + V V+ D P +Y+HR+GR+ R+
Sbjct: 310 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQ-VSLVINFDLPTQPENYLHRIGRSGRFG 368
Query: 409 SVGKSVLFLLPSEVEML 425
G ++ F+ + ML
Sbjct: 369 RKGVAINFVTLDDQRML 385
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594094 REVERSE
LENGTH=402
Length = 402
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 190/375 (50%), Gaps = 17/375 (4%)
Query: 56 DTTFSRYAGVNR-FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGS 114
D F+ Y V+ F + L + + G+ F + IQ+ + G DV+ A++G+
Sbjct: 18 DEFFTSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGT 77
Query: 115 GKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIG 174
GKT F VL++L + +++++PTRELA Q+ V++A+G Y G +G
Sbjct: 78 GKTATFCSGVLQQLDFSLIQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVG 133
Query: 175 GRKDVNMEKERVNE--LNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKK 232
G E +R+ + +++++ TPGR+ M + + +++ VLDEAD +L GFK
Sbjct: 134 GTS--VREDQRILQAGVHVVVGTPGRVFD-MLKRQSLRADNIKMFVLDEADEMLSRGFKD 190
Query: 233 DLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMI 292
+ I LP + Q +FSAT ++ R + P + V + +T +KQ +
Sbjct: 191 QIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEG--IKQFYVN 248
Query: 293 VPLDQ-KLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQER 351
V ++ KL+ L +T +++++F+++ ++V ++ + + + HG M Q
Sbjct: 249 VEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTV--SATHGDMDQNT 306
Query: 352 RMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSV 410
R I EF S VL +TD+ ARG+D + V V+ D P +Y+HR+GR+ R+
Sbjct: 307 RDIIMREFRSGSSRVLITTDLLARGIDVQQ-VSLVINFDLPTQPENYLHRIGRSGRFGRK 365
Query: 411 GKSVLFLLPSEVEML 425
G ++ F+ + ML
Sbjct: 366 GVAINFVTRDDERML 380
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592586-4594128 REVERSE
LENGTH=415
Length = 415
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 190/375 (50%), Gaps = 17/375 (4%)
Query: 56 DTTFSRYAGVNR-FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGS 114
D F+ Y V+ F + L + + G+ F + IQ+ + G DV+ A++G+
Sbjct: 28 DEFFTSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGT 87
Query: 115 GKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIG 174
GKT F VL++L + +++++PTRELA Q+ V++A+G Y G +G
Sbjct: 88 GKTATFCSGVLQQLDFSLIQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVG 143
Query: 175 GRKDVNMEKERVNE--LNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKK 232
G E +R+ + +++++ TPGR+ M + + +++ VLDEAD +L GFK
Sbjct: 144 GTS--VREDQRILQAGVHVVVGTPGRVF-DMLKRQSLRADNIKMFVLDEADEMLSRGFKD 200
Query: 233 DLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMI 292
+ I LP + Q +FSAT ++ R + P + V + +T +KQ +
Sbjct: 201 QIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEG--IKQFYVN 258
Query: 293 VPLDQ-KLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQER 351
V ++ KL+ L +T +++++F+++ ++V ++ + + + HG M Q
Sbjct: 259 VEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTV--SATHGDMDQNT 316
Query: 352 RMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSV 410
R I EF S VL +TD+ ARG+D + V V+ D P +Y+HR+GR+ R+
Sbjct: 317 RDIIMREFRSGSSRVLITTDLLARGIDVQQ-VSLVINFDLPTQPENYLHRIGRSGRFGRK 375
Query: 411 GKSVLFLLPSEVEML 425
G ++ F+ + ML
Sbjct: 376 GVAINFVTRDDERML 390
>AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:19047960-19049967 FORWARD LENGTH=392
Length = 392
Score = 132 bits (332), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 186/367 (50%), Gaps = 12/367 (3%)
Query: 65 VNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPV 124
+ F + ++ K + G+ D + ++IQ+ +L L GRDV+ A++G+GKT I V
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 125 LEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKE 184
+ ++ V +++SP+RELA Q ++A+G + A IGG+ K+
Sbjct: 81 CQIVNIS----SRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKK 136
Query: 185 RVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPKR 244
++ + TPGR+ M + + +++LVLDE+D +L G K + + LP
Sbjct: 137 LERGVHAVSGTPGRVYD-MIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHD 195
Query: 245 RQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQ-KLDMLW 303
Q L SAT + I ++ + DP + V + +T +KQ + V ++ K D L
Sbjct: 196 IQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEG--IKQYYVDVDKEEWKFDTLC 253
Query: 304 SFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKR 363
++ ++F ++ ++V ++ E + + +HG +Q+ R I ++F +
Sbjct: 254 DLYGRLTINQAIIFCNTRQKVDWLTEKMRS--SNFIVSSMHGDKRQKERDDIMNQFRSFK 311
Query: 364 S-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLPSEV 422
S VL ++DV ARG+D + V V+ D P N YIHR+GR R+ G ++ F+ S++
Sbjct: 312 SRVLIASDVWARGIDV-QTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDM 370
Query: 423 EMLERLK 429
+ L+ ++
Sbjct: 371 KDLKDIE 377
>AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiation
factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407
Length = 407
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 189/376 (50%), Gaps = 24/376 (6%)
Query: 56 DTTFSRYAGVNR-FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALC-GRDVLGAAKTG 113
D F+ Y V+ F + L + + G + QR +P C G DV+ A++G
Sbjct: 28 DEFFTSYDDVHESFDAMGLQENLLRGFEKPSAIQ----QRGIVP--FCKGLDVIQQAQSG 81
Query: 114 SGKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLI 173
+GKT F VL++L + +++++PTRELA Q+ V++A+G Y G +
Sbjct: 82 TGKTATFCSGVLQQLDFSLIQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACV 137
Query: 174 GGRKDVNMEKERVNE--LNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFK 231
GG E +R+ + +++++ TPGR+ M + + +++ VLDEAD +L GFK
Sbjct: 138 GGTS--VREDQRILQAGVHVVVGTPGRVF-DMLKRQSLRADNIKMFVLDEADEMLSRGFK 194
Query: 232 KDLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVM 291
+ I LP + Q +FSAT ++ R + P + V + +T +KQ +
Sbjct: 195 DQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEG--IKQFYV 252
Query: 292 IVPLDQ-KLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQE 350
V ++ KL+ L +T +++++F+++ ++V ++ + + + HG M Q
Sbjct: 253 NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTV--SATHGDMDQN 310
Query: 351 RRMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKS 409
R I EF S VL +TD+ ARG+D + V V+ D P +Y+HR+GR+ R+
Sbjct: 311 TRDIIMREFRSGSSRVLITTDLLARGIDVQQ-VSLVINFDLPTQPENYLHRIGRSGRFGR 369
Query: 410 VGKSVLFLLPSEVEML 425
G ++ F+ + ML
Sbjct: 370 KGVAINFVTRDDERML 385
>AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:16631661-16634834
FORWARD LENGTH=626
Length = 626
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 117/419 (27%), Positives = 193/419 (46%), Gaps = 69/419 (16%)
Query: 68 FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEK 127
F L L + I L T IQ++++P+ L G+DV+ AKTGSGKTLA+++P+L+K
Sbjct: 48 FEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQK 107
Query: 128 LH------RERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYH--GFSAGLLIGGRKDV 179
L +++ P + I+ P+REL Q++ + ++ + A L
Sbjct: 108 LFSADSVSKKKLAP----SAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSAS 163
Query: 180 NMEKERVNELNILICTPGRLLQHMDE---TPNFDCSQMQVLVLDEADRILDSGFKKDLNA 236
+M IL+ TP + + P + +LVLDEAD +L G++ +L +
Sbjct: 164 DMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRS 223
Query: 237 IISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEES--VTATPTLLKQI-VMIV 293
+ S +P+R Q L SAT + ++ L +L L +P L++ E++ A P+ ++Q +
Sbjct: 224 VTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCS 283
Query: 294 PLDQKLDMLWSFIKTHLQSKTLVFLSSCK---QVKFVFEAFKKLHPGIPLKCLHGRMKQE 350
D+ L +L +Q K L+F+++ ++K E F GI L+G + Q
Sbjct: 284 AQDKLLHILALLKLEVVQKKILIFINTIDMGFRLKLFLEKF-----GIKSAILNGELPQN 338
Query: 351 RRMAIYSEFCEKRSVLFSTDVA-------------------------------------- 372
R+ I +F + LF +A
Sbjct: 339 SRLHILEQF---NAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFG 395
Query: 373 -ARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLPSEVEMLERLKA 430
RG+DF K V V+ D P++V YIHR+GRT R S G SV + P E+E E +K+
Sbjct: 396 VVRGIDFKK-VHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKS 453
>AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr3:19687968-19690423 FORWARD LENGTH=496
Length = 496
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 186/380 (48%), Gaps = 37/380 (9%)
Query: 62 YAGVNRFSHLPLSKKTIDGLR-DAKFVAMTDIQRASLPHALC--GRDVLGAAKTGSGKTL 118
Y +RF L LS + + GL + KF + IQ SLP + + ++ A GSGKT
Sbjct: 87 YTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTT 146
Query: 119 AFIIPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLI--GGR 176
F++ +L ++ P+ ++ I PTRELA Q +VL+ +GK+ G +A L + R
Sbjct: 147 CFVLGMLSRVDPTLREPQ----ALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTR 202
Query: 177 KDVNMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDS-GFKKDLN 235
+ +++I TPG L + M + +++LV DEAD +L + GF+ D
Sbjct: 203 GAPAATRGAPVSAHVVIGTPGTLKKWM-AFKRLGLNHLKILVFDEADHMLATDGFRDDSL 261
Query: 236 AI---ISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMI 292
I I ++ Q LFSAT ++++D ++KDP L V E + +KQ ++
Sbjct: 262 KIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDS--VKQYKVV 319
Query: 293 VPLDQ-KLDMLWSFIKTHLQ-----SKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGR 346
P +Q K+++ IK + +T++F+ + + V +A ++ G + +HG
Sbjct: 320 CPKEQNKIEV----IKDQIMELGDIGQTIIFVKTKASAQKVHKALAEM--GYDVTSVHGN 373
Query: 347 MKQERRMAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVAS-------YI 398
+ + R I EF E + VL +TDV ARG D + V+ VV + P + Y+
Sbjct: 374 LTESDRDKIVKEFKECLTQVLIATDVIARGFD-QQRVNLVVNYNLPTKYETGEPDYEVYL 432
Query: 399 HRVGRTARYKSVGKSVLFLL 418
HRVGR R+ G LL
Sbjct: 433 HRVGRAGRFGRKGAVFNLLL 452
>AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 184/374 (49%), Gaps = 19/374 (5%)
Query: 68 FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEK 127
F+ L K + L A + T IQ ++P AL G+ +L +A TGSGKT +F++P++ +
Sbjct: 112 FTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISR 171
Query: 128 L---HRERWGPED---GVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNM 181
H E P D +++++PTREL Q+ D K +GK F L++GG ++
Sbjct: 172 CTTYHSEH--PSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGG-DPMSG 228
Query: 182 EKERVNE-LNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQ 240
+ R+ + + ++I TPGR++ + + + + VLDE D +L GF+ + I
Sbjct: 229 QLYRIQQGVELIIGTPGRVVDLLSKH-TIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQA 287
Query: 241 LPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLD 300
L + Q LFSAT ++ ++ + K+ +S+ + + Q+ + V QK
Sbjct: 288 L-SQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPN--KPNKAVNQLAIWVDAKQKKQ 344
Query: 301 MLWSFIKT--HLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHG-RMKQERRMAIYS 357
L+ +++ H + +V++SS + A + G+ +HG + +ERR + S
Sbjct: 345 KLFDILRSQNHFKPPAVVYVSSRVGADLLANAITVVT-GVKALSIHGEKPMKERRDVMGS 403
Query: 358 EFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFL 417
+ VL ST V RG+D V V+ D P + YIH +GR +R G +++F+
Sbjct: 404 FLGGEVPVLVSTGVLGRGVDL-LVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFV 462
Query: 418 LPSEVEMLERLKAA 431
+ + L AA
Sbjct: 463 NEDDRNLFPDLVAA 476
>AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 184/374 (49%), Gaps = 19/374 (5%)
Query: 68 FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEK 127
F+ L K + L A + T IQ ++P AL G+ +L +A TGSGKT +F++P++ +
Sbjct: 112 FTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISR 171
Query: 128 L---HRERWGPED---GVGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNM 181
H E P D +++++PTREL Q+ D K +GK F L++GG ++
Sbjct: 172 CTTYHSEH--PSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGG-DPMSG 228
Query: 182 EKERVNE-LNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAIISQ 240
+ R+ + + ++I TPGR++ + + + + VLDE D +L GF+ + I
Sbjct: 229 QLYRIQQGVELIIGTPGRVVDLLSKH-TIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQA 287
Query: 241 LPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLD 300
L + Q LFSAT ++ ++ + K+ +S+ + + Q+ + V QK
Sbjct: 288 L-SQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPN--KPNKAVNQLAIWVDAKQKKQ 344
Query: 301 MLWSFIKT--HLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHG-RMKQERRMAIYS 357
L+ +++ H + +V++SS + A + G+ +HG + +ERR + S
Sbjct: 345 KLFDILRSQNHFKPPAVVYVSSRVGADLLANAITVVT-GVKALSIHGEKPMKERRDVMGS 403
Query: 358 EFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFL 417
+ VL ST V RG+D V V+ D P + YIH +GR +R G +++F+
Sbjct: 404 FLGGEVPVLVSTGVLGRGVDL-LVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFV 462
Query: 418 LPSEVEMLERLKAA 431
+ + L AA
Sbjct: 463 NEDDRNLFPDLVAA 476
>AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3554272-3556646 FORWARD LENGTH=344
Length = 344
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 176/337 (52%), Gaps = 28/337 (8%)
Query: 105 DVLGAAKTGSGKTLAFIIPVLEKLHRERWGPEDG-VGSIIISPTRELAGQLFDVLKAVGK 163
DV+ AK+G GKT F++ L+++ P G V ++++ TRELA Q+ +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIE-----PSPGQVSALVLCHTRELAYQICNEFVRFST 56
Query: 164 YHGFSAGLLIGGRKDVNMEKERV-NEL-NILICTPGRLLQHMDETPNFDCSQMQVLVLDE 221
Y + + G ++ + K+ + NE +I++ TPGR+L E + ++ +LDE
Sbjct: 57 YLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALARE-KDLSLKNVRHFILDE 115
Query: 222 ADRILDS-GFKKDLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVT 280
D++L+S ++D+ I P +Q +FSAT +K I+ + + ++DP + V +E+
Sbjct: 116 CDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL 175
Query: 281 ATPTLLKQIVMIVPL--DQKLDMLWSFIKTHLQSKTLVFLSSCKQV----KFVFEAFKKL 334
L++ + + + ++KL+ L + ++ ++F+ S + K + E
Sbjct: 176 TLHGLVQHYIKLSEMEKNRKLNDLLDALDF---NQVVIFVKSVSRAAELNKLLVEC---- 228
Query: 335 HPGIPLKCLHGRMKQERRMAIYSEFCE-KRSVLFSTDVAARGLDFNKAVDWVVQVDCPEN 393
P C+H M QE R+ Y F E + +L +TD+ RG+D + V+ V+ D P++
Sbjct: 229 --NFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIER-VNIVINYDMPDS 285
Query: 394 VASYIHRVGRTARYKSVGKSVLFLL-PSEVEMLERLK 429
+Y+HRVGR R+ + G ++ F+ S+ E+L +++
Sbjct: 286 ADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQ 322
>AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:4351888-4353543 FORWARD LENGTH=551
Length = 551
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 106/416 (25%), Positives = 185/416 (44%), Gaps = 58/416 (13%)
Query: 68 FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEK 127
F L L +D L F TD+Q A++P + G D + + TGSGKTLA+++P+L +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 128 L------HRERWGPEDG---VGSIIISPTRELAGQLF-DVLKAVGKYHGFSAGLLIGGRK 177
+ R D + ++I++P+REL Q+ +V K +G H L+GG
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGAN 231
Query: 178 DVNMEKE-RVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKDLNA 236
+ E+ + N+ I++ TPGR+ + + + + LVLDE D +L F++D++
Sbjct: 232 RMRQEEALKKNKPAIVVGTPGRIAE-ISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHR 290
Query: 237 IISQLPKR--------------RQTFLFSATQTKSIQDLARLSLKDPEYLSVH------- 275
I+ + KR RQT L SAT S+ A+ +P + +
Sbjct: 291 ILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLDT 350
Query: 276 ---------------------EESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKT 314
+ ++ + P LK I K+D L +
Sbjct: 351 VQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDAQSV 410
Query: 315 LVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKR-SVLFSTDVAA 373
+ F++ +Q+K V +K G+ +HG + + R + +F VL + +++A
Sbjct: 411 IAFMNHSRQLKDV--VYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSA 468
Query: 374 RGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLPSEVEMLERLK 429
RGLD + D VV ++ P + Y HR GRT R G V S+V ++++++
Sbjct: 469 RGLDVAEC-DLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKME 523
>AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:2201531-2204662 FORWARD LENGTH=781
Length = 781
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 102/389 (26%), Positives = 183/389 (47%), Gaps = 32/389 (8%)
Query: 68 FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEK 127
F+ + S+ + L++ F IQ + + G+ + A ++GSGKTLA+++PV+++
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 128 LHRE--RWGPEDGVGS---IIISPTRELAGQLFDVLKAVGKYH-GFSAGLLIGGRKDVNM 181
L E + + G I++ PT ELA Q+ +++ K F + ++ GG +
Sbjct: 436 LREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQ 495
Query: 182 EKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRIL-DSGFKKDLNAIISQ 240
+ +++LI TPGR M+E S ++ +LDE D + D F+ L +I+
Sbjct: 496 LENLEQGVDVLIATPGRFTYLMNEGI-LGLSNLRCAILDEVDILFGDDEFEAALQNLINS 554
Query: 241 LPKRRQTFLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLD---- 296
P Q +AT I + +L P+ V V L++ ++ D
Sbjct: 555 SPVTAQYLFVTATLPLEIYN--KLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAE 612
Query: 297 --------QKLDMLWSFIKTHLQSKTLVF---LSSCKQVKFVFEAFKKLHPGIPLKCLHG 345
K L ++ + SKT++F + +C++V+ +F+ + + + H
Sbjct: 613 KTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHA 672
Query: 346 RMKQERRMAIYSEFC-----EKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHR 400
+ QE R+ EF E L TD A+RG+DF+ VD VV D P + + Y+ R
Sbjct: 673 ALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFS-GVDHVVLFDFPRDPSEYVRR 731
Query: 401 VGRTAR-YKSVGKSVLFLLPSEVEMLERL 428
VGRTAR + GK+ +F++ +V + R+
Sbjct: 732 VGRTARGARGKGKAFIFVVGKQVGLARRI 760
>AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=468
Length = 468
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/423 (24%), Positives = 198/423 (46%), Gaps = 71/423 (16%)
Query: 62 YAGVNR--FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLA 119
Y G++ F L + + + D+ F +++Q +P A+ G DV+ AK+G GKT
Sbjct: 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99
Query: 120 FIIPVLEKLHRERWGPEDG-VGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKD 178
F++ L+++ P G V ++++ TRELA Q+ + Y + + G +
Sbjct: 100 FVLSTLQQIE-----PSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 154
Query: 179 VNMEKERV-NEL-NILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDS-GFKKDLN 235
+ + K+ + NE +I++ TPGR+L E + ++ +LDE D++L+S ++D+
Sbjct: 155 IKIHKDLLKNECPHIVVGTPGRVLALAREK-DLSLKNVRHFILDECDKMLESLDMRRDVQ 213
Query: 236 AIISQLPKRRQTFLFSATQTKSIQDL---------------------------------- 261
I P +Q +FSAT +K I+ +
Sbjct: 214 EIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDGLRTLSGDSVALWWVGFGSGYCVFPRF 273
Query: 262 --ARLSLK-----DPEYLSVHEESVTATPTLLKQIVMIVPL--DQKLDMLWSFIKTHLQS 312
AR+ L DP + V +E+ L++ + + + ++KL+ L + +
Sbjct: 274 HRARMGLNVPSNIDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDF---N 330
Query: 313 KTLVFLSSCKQV----KFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCE-KRSVLF 367
+ ++F+ S + K + E P C+H M QE R+ Y F E + +L
Sbjct: 331 QVVIFVKSVSRAAELNKLLVEC------NFPSICIHSGMSQEERLTRYKSFKEGHKRILV 384
Query: 368 STDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLL-PSEVEMLE 426
+TD+ RG+D + V+ V+ D P++ +Y+HRVGR R+ + G ++ F+ S+ E+L
Sbjct: 385 ATDLVGRGIDIER-VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLN 443
Query: 427 RLK 429
+++
Sbjct: 444 QVQ 446
>AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359628-360734
FORWARD LENGTH=368
Length = 368
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 168/332 (50%), Gaps = 19/332 (5%)
Query: 96 SLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKL---HRERWGPED---GVGSIIISPTRE 149
++P AL G+ +L +A TGSGKT +F++P++ + H E P D +++++PTRE
Sbjct: 3 AIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEH--PSDQRRNPLAMVLAPTRE 60
Query: 150 LAGQLFDVLKAVGKYHGFSAGLLIGGRKDVNMEKERVNE-LNILICTPGRLLQHMDETPN 208
L Q+ D K +GK F L++GG ++ + R+ + + ++I TPGR++ + +
Sbjct: 61 LCVQVEDQAKMLGKGLPFKTALVVGG-DPMSGQLYRIQQGVELIIGTPGRVVDLLSKH-T 118
Query: 209 FDCSQMQVLVLDEADRILDSGFKKDLNAIISQLPKRRQTFLFSATQTKSIQDLARLSLKD 268
+ + VLDE D +L GF+ + I L + Q LFSAT ++ ++ + K+
Sbjct: 119 IELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVEKVGGSLAKE 177
Query: 269 PEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKT--HLQSKTLVFLSSCKQVKF 326
+S+ + + Q+ + V QK L+ +++ H + +V++SS
Sbjct: 178 IILVSIGNPN--KPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADL 235
Query: 327 VFEAFKKLHPGIPLKCLHG-RMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWV 385
+ A + G+ +HG + +ERR + S + VL ST V RG+D V V
Sbjct: 236 LANAITVV-TGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDL-LVVRQV 293
Query: 386 VQVDCPENVASYIHRVGRTARYKSVGKSVLFL 417
+ D P + YIH +GR +R G +++F+
Sbjct: 294 IVFDMPSTIKEYIHVIGRASRMGEKGTAIVFV 325
>AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 |
chr4:9001426-9004534 FORWARD LENGTH=522
Length = 522
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 172/408 (42%), Gaps = 82/408 (20%)
Query: 104 RDVLGAAKTGSGKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGK 163
RD+ + TGSGKTL++ +P+++ L P + ++++ PTR+LA Q+ DV A+
Sbjct: 73 RDICVNSPTGSGKTLSYALPIVQLLASR---PVRCLRALVVLPTRDLALQVKDVFDAIAP 129
Query: 164 YHGFSAGLLIGGRKDV---------------------NMEKERVNELNILICTPGRLLQH 202
G S G +G ++ + + ++IL+ TPGRL+ H
Sbjct: 130 AVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDH 189
Query: 203 MDETPNFDCSQMQVLVLDEADRILDSGFKKDLNAII--------SQLPK----------- 243
++ T F ++ LV+DE DR+L ++ L ++ S P
Sbjct: 190 INNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGS 249
Query: 244 ----RRQT---------------FLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPT 284
RRQ+ + SAT T+ L +L L P +++ S P
Sbjct: 250 LQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTG-GSRYRLPE 308
Query: 285 LLKQIVMIVPLDQKLDMLWSFIKTHLQSKTLVFLSS-------CKQVKFVFEAFKKLHPG 337
L+ + +I K L + +K+ K ++F SS CK + F + P
Sbjct: 309 KLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGD------PK 362
Query: 338 IPLKCLHGRMKQERRMAIYSEFCEKR-SVLFSTDVAARGLDFNKAVDWVVQVDCPENVAS 396
I K G + Q R F + VL ++D RG+D K V V+ D P +
Sbjct: 363 IKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDV-KGVTNVINYDMPPFAKT 421
Query: 397 YIHRVGRTARYKSVGKSVLFLLPSEV----EMLERLKAAKVPVHLTKP 440
+IHR GRTAR G+ L EV ++LE++ + P++ P
Sbjct: 422 FIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPP 469
>AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6461444-6463687
FORWARD LENGTH=472
Length = 472
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 152/351 (43%), Gaps = 32/351 (9%)
Query: 81 LRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLHRERWGPEDGVG 140
+ + FV TDIQR +LP GRD + A+TGSGKTL +++ + ++ +R V
Sbjct: 91 MEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQR----SSVQ 146
Query: 141 SIIISPTRELAGQLFDVLKAVGK-----YHGFSA-GLLIGGRKDVNMEKERVNELNILIC 194
++I+ PTREL Q+ V + + G + LL GG + + IL+
Sbjct: 147 AVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVA 206
Query: 195 TPGRLLQHMDETPNFDCSQMQVLVLDEADRILDS----GFKKDLNAIISQLPKRRQTFLF 250
T L HM E F ++VLV+DE D + S G + L S K RQT
Sbjct: 207 TVASLC-HMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDK-RQTVFA 264
Query: 251 SAT---QTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIK 307
SA+ + D + + + VH ++ P L ++ K +L + ++
Sbjct: 265 SASIPQHKHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLALLE 324
Query: 308 THLQSKTLVFLSSCKQ----------VKFVFEAFKKLHPG-IPLKCLHGRMKQERRMAIY 356
+ ++F+ + + E K + G + + L G M R A
Sbjct: 325 SDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASL 384
Query: 357 SEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTAR 406
+E + +L STD+AARG+D + + D P+ V Y+HR GR R
Sbjct: 385 TEIRQGGGFLLVSTDIAARGIDLPETTH-IFNFDLPQTVTDYLHRAGRAGR 434
>AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=486
Length = 486
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 111/213 (52%), Gaps = 12/213 (5%)
Query: 62 YAGVNR--FSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGSGKTLA 119
Y G++ F L + + + D+ F +++Q +P A+ G DV+ AK+G GKT
Sbjct: 40 YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV 99
Query: 120 FIIPVLEKLHRERWGPEDG-VGSIIISPTRELAGQLFDVLKAVGKYHGFSAGLLIGGRKD 178
F++ L+++ P G V ++++ TRELA Q+ + Y + + G +
Sbjct: 100 FVLSTLQQIE-----PSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 154
Query: 179 VNMEKERV-NEL-NILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDS-GFKKDLN 235
+ + K+ + NE +I++ TPGR+L + + ++ +LDE D++L+S ++D+
Sbjct: 155 IKIHKDLLKNECPHIVVGTPGRVLA-LAREKDLSLKNVRHFILDECDKMLESLDMRRDVQ 213
Query: 236 AIISQLPKRRQTFLFSATQTKSIQDLARLSLKD 268
I P +Q +FSAT +K I+ + + ++D
Sbjct: 214 EIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD 246
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 338 IPLKCLHGRMKQERRMAIYSEFCE-KRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVAS 396
P C+H M QE R+ Y F E + +L +TD+ RG+D + V+ V+ D P++ +
Sbjct: 372 FPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIER-VNIVINYDMPDSADT 430
Query: 397 YIHRVGRTARYKSVGKSVLFLL-PSEVEMLERLK 429
Y+HRVGR R+ + G ++ F+ S+ E+L +++
Sbjct: 431 YLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQ 464
>AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:22090369-22092885 REVERSE LENGTH=581
Length = 581
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 286 LKQIVMIVPLDQKLDMLWSFIKTHLQS---KTLVFLSSCKQVKFVFEAFKKLHPGIPLKC 342
LKQ + V +D ++D L +K + + +T+VF ++ + V+ V + +K I
Sbjct: 396 LKQKWVEVTVDSQVDALIEAVKNNNNTNTERTMVFANTVEAVEAVADILEK--ASIQCYR 453
Query: 343 LHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVG 402
H K + R I ++F E V TD AARG+D V V+Q D + ++HR+G
Sbjct: 454 YHKNHKLDERANILADFRETGGVFVCTDAAARGVDVPN-VSHVIQADFASSAVDFLHRIG 512
Query: 403 RTARYKSVGKSVLFLLPSEVEMLERLKAA 431
RTAR G + +++E ++ A
Sbjct: 513 RTARAGQYGTVTSLYTEANRDLVEAIREA 541
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 55 DDTTFSRYAGVNRFSHLPLSKKTIDGLRDAKFVAMTDIQRASLPHALCGRDVLGAAKTGS 114
+DT F+ + + L LS LRD+ F + Q +P L G+DV+ AA+TGS
Sbjct: 71 NDTFFADH--TVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGS 128
Query: 115 GKTLAFIIPVLEKL-----------HRERWGPEDGVGSIIISPTRELAGQLFDVLKAVGK 163
GKT ++ P++++L ER P + S+I+ P L Q+ ++ +
Sbjct: 129 GKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNI-SLILCPNVMLCEQVVRMVNGLVD 187
Query: 164 YHGFSAGLLIGGRKDVNMEKERVNELNILICTPGRLLQHMDETPN-----FDCSQMQVLV 218
G + L + +R+ + I++ TP LL +++ N C ++ +V
Sbjct: 188 EDG-NPLLRVEAVCGSQGWPDRLPD--IIVSTPAALLNNIEPKRNRRLEFLRC--VKYVV 242
Query: 219 LDEADRILDSGFKKDLNAIISQL 241
DEAD +L F+ + +I+ L
Sbjct: 243 FDEADMLLCGSFQNQIIRLINML 265
>AT5G19210.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6462100-6463687
FORWARD LENGTH=315
Length = 315
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 96/235 (40%), Gaps = 22/235 (9%)
Query: 191 ILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDS----GFKKDLNAIISQLPKRRQ 246
IL+ T L HM E F ++VLV+DE D + S G + L S KR Q
Sbjct: 46 ILVATVASLC-HMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKR-Q 103
Query: 247 TFLFSAT---QTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLW 303
T SA+ + D + + + VH ++ P L ++ K +L
Sbjct: 104 TVFASASIPQHKHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLL 163
Query: 304 SFIKTHLQSKTLVFLSSCKQ----------VKFVFEAFKKLHPG-IPLKCLHGRMKQERR 352
+ +++ ++F+ + + E K + G + + L G M R
Sbjct: 164 ALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSR 223
Query: 353 MAIYSEFCEKRS-VLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTAR 406
A +E + +L STD+AARG+D + + D P+ V Y+HR GR R
Sbjct: 224 AASLTEIRQGGGFLLVSTDIAARGIDLPETTH-IFNFDLPQTVTDYLHRAGRAGR 277