Miyakogusa Predicted Gene
- Lj0g3v0298859.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0298859.1 Non Chatacterized Hit- tr|I1NRF5|I1NRF5_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,42.74,6e-19,seg,NULL; RINGv,Zinc finger, RING-CH-type;
ZF_RING_CH,Zinc finger, RING-CH-type; GB DEF:
HYPOTHETICA,NODE_54933_length_1200_cov_73.122498.path1.1
(220 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05830.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 193 6e-50
AT2G37950.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 139 1e-33
AT5G01070.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 136 1e-32
AT5G59000.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 121 3e-28
AT2G34200.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 77 1e-14
AT5G01070.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 75 4e-14
AT5G60580.4 | Symbols: | RING/U-box superfamily protein | chr5:... 60 1e-09
AT5G60580.2 | Symbols: | RING/U-box superfamily protein | chr5:... 60 1e-09
AT5G60580.3 | Symbols: | RING/U-box superfamily protein | chr5:... 60 1e-09
AT5G60580.1 | Symbols: | RING/U-box superfamily protein | chr5:... 60 1e-09
AT2G45530.1 | Symbols: | RING/U-box superfamily protein | chr2:... 58 5e-09
AT5G63780.1 | Symbols: SHA1 | RING/FYVE/PHD zinc finger superfam... 55 3e-08
AT3G06330.3 | Symbols: | RING/U-box superfamily protein | chr3:... 54 8e-08
AT3G06330.1 | Symbols: | RING/U-box superfamily protein | chr3:... 54 1e-07
AT5G03180.1 | Symbols: | RING/U-box superfamily protein | chr5:... 53 1e-07
AT5G03180.2 | Symbols: | RING/U-box superfamily protein | chr5:... 53 1e-07
AT3G06330.2 | Symbols: | RING/U-box superfamily protein | chr3:... 53 1e-07
AT5G08750.3 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 53 2e-07
AT5G08750.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 53 2e-07
AT5G08750.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily ... 53 2e-07
AT3G09760.1 | Symbols: | RING/U-box superfamily protein | chr3:... 52 3e-07
AT5G18760.1 | Symbols: | RING/U-box superfamily protein | chr5:... 48 6e-06
>AT5G05830.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:1755910-1756825 FORWARD LENGTH=204
Length = 204
Score = 193 bits (491), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/198 (56%), Positives = 125/198 (63%), Gaps = 14/198 (7%)
Query: 24 SSEGCSGDREEEERRGCSDGSGAEIVGVCEKERGRGSSASDSECSXXXXXXXXXXXXXXX 83
SS GC GD E G + EIV K+ R S+AS CS
Sbjct: 19 SSSGCDGDGEPRRSSGAVEKE-EEIV----KDEERRSNASV--CSVEIDLELGLPEKV-- 69
Query: 84 XKVHLAKVERDCRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNK 143
VHL++ ERDCRICH+S+D + N ESG PIELGCSCK DLAAAHK CAE WFKIKGNK
Sbjct: 70 --VHLSQSERDCRICHMSLDAA--NLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNK 125
Query: 144 TCEICGSIAHNVAGAIEVQMTEQWNEANDXXXXXXXXX-XXXXETRNFWQGHRFLNFLLA 202
CE+CGSIA NV G++EV+ E NEAN E R+FWQGHRFLNFLLA
Sbjct: 126 ICEVCGSIAGNVVGSVEVESEESRNEANGVENLTLRTSGPRLVEGRSFWQGHRFLNFLLA 185
Query: 203 CMVFAFVISWLFHFNVPS 220
CMVFAFVISWLFHFNVPS
Sbjct: 186 CMVFAFVISWLFHFNVPS 203
>AT2G37950.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr2:15882536-15883665 REVERSE LENGTH=207
Length = 207
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 83/133 (62%), Gaps = 6/133 (4%)
Query: 89 AKVERDCRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEIC 148
A E+DCRICHL ++ S G IELGCSCKDDLA AH+QCAE WFKIKG+KTCEIC
Sbjct: 78 APPEKDCRICHLGVETS-----GGGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEIC 132
Query: 149 GSIAHNVAGAIE-VQMTEQWNEANDXXXXXXXXXXXXXETRNFWQGHRFLNFLLACMVFA 207
S+A NV GA E V T + E + N WQ R +N +LACMVF
Sbjct: 133 QSVARNVGGANEMVGSTMEERELRNGEETAAGEGGGATVVENRWQPQRVVNLVLACMVFG 192
Query: 208 FVISWLFHFNVPS 220
F ISW+FHF+V S
Sbjct: 193 FFISWIFHFHVSS 205
>AT5G01070.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:25094-25799 REVERSE LENGTH=206
Length = 206
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 82/132 (62%), Gaps = 5/132 (3%)
Query: 92 ERDCRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSI 151
E+DCRICHL ++ S E G P+ LGCSCKDDL HKQCA+ WFKIKGNKTCEIC SI
Sbjct: 75 EKDCRICHLGLESS--RHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEICRSI 132
Query: 152 AHNVAGAI-EVQMTEQWNEANDXXXXXXXXXXXXXET--RNFWQGHRFLNFLLACMVFAF 208
A N E+ T +D ++ R +G+RFLNFLL CMV AF
Sbjct: 133 AQNFFKVDNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRRLCRGNRFLNFLLTCMVCAF 192
Query: 209 VISWLFHFNVPS 220
VISW FHFN+PS
Sbjct: 193 VISWFFHFNLPS 204
>AT5G59000.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:23818768-23820018 FORWARD LENGTH=231
Length = 231
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 81/157 (51%), Gaps = 39/157 (24%)
Query: 94 DCRICHLSMDMSMSNQES--------------------------------GTPIELGCSC 121
DCRICHL ++ +N+E+ G P++LGCSC
Sbjct: 80 DCRICHLPLE---TNKEAEDEDEEEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLGCSC 136
Query: 122 KDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHNVAGAIEVQMTEQWNEANDXXXXXXXXX 181
K DL AH +CAE WFKIKGN TCEICG++A NVAG + + + A+
Sbjct: 137 KGDLGVAHSKCAETWFKIKGNMTCEICGAMALNVAG----EQSNPESTASTHSQAAAGQS 192
Query: 182 XXXXETRNFWQGHRFLNFLLACMVFAFVISWLFHFNV 218
E R W G +NFLLA MVFAFV+SWLFHF V
Sbjct: 193 LTQTEPRGIWHGRPVMNFLLAAMVFAFVVSWLFHFKV 229
>AT2G34200.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr2:14441105-14441882 FORWARD LENGTH=222
Length = 222
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 52/86 (60%), Gaps = 9/86 (10%)
Query: 92 ERDCRICHLSMDMSMS---NQESGTP--IELGCSCKDDLAAAHKQCAEAWFKIKGNKTCE 146
ER CRICH D S + +S +P IE+GC CK++L AH CAEAWFK++GN CE
Sbjct: 99 ERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCE 158
Query: 147 ICGSIAHNVAGAIEVQMTEQWNEAND 172
ICG A NV V++ E W+ D
Sbjct: 159 ICGCTAKNVT----VRLMEDWSGERD 180
>AT5G01070.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:25425-25799 REVERSE LENGTH=124
Length = 124
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Query: 92 ERDCRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNK 143
E+DCRICHL ++ S E G P+ LGCSCKDDL HKQCA+ WFKIKGNK
Sbjct: 75 EKDCRICHLGLESS--RHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNK 124
>AT5G60580.4 | Symbols: | RING/U-box superfamily protein |
chr5:24354298-24356706 FORWARD LENGTH=494
Length = 494
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 92 ERDCRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSI 151
E CRIC + + E G +++ CSCK +LA AHK CA WF IKGNKTCE+C
Sbjct: 254 EAVCRICLVEL------CEGGETLKMECSCKGELALAHKDCALKWFTIKGNKTCEVCKQE 307
Query: 152 AHNVA 156
N+
Sbjct: 308 VKNLP 312
>AT5G60580.2 | Symbols: | RING/U-box superfamily protein |
chr5:24354298-24356706 FORWARD LENGTH=494
Length = 494
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 92 ERDCRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSI 151
E CRIC + + E G +++ CSCK +LA AHK CA WF IKGNKTCE+C
Sbjct: 254 EAVCRICLVEL------CEGGETLKMECSCKGELALAHKDCALKWFTIKGNKTCEVCKQE 307
Query: 152 AHNVA 156
N+
Sbjct: 308 VKNLP 312
>AT5G60580.3 | Symbols: | RING/U-box superfamily protein |
chr5:24354298-24356706 FORWARD LENGTH=487
Length = 487
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 92 ERDCRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSI 151
E CRIC + + E G +++ CSCK +LA AHK CA WF IKGNKTCE+C
Sbjct: 254 EAVCRICLVEL------CEGGETLKMECSCKGELALAHKDCALKWFTIKGNKTCEVCKQE 307
Query: 152 AHNVA 156
N+
Sbjct: 308 VKNLP 312
>AT5G60580.1 | Symbols: | RING/U-box superfamily protein |
chr5:24354298-24356706 FORWARD LENGTH=487
Length = 487
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 92 ERDCRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSI 151
E CRIC + + E G +++ CSCK +LA AHK CA WF IKGNKTCE+C
Sbjct: 254 EAVCRICLVEL------CEGGETLKMECSCKGELALAHKDCALKWFTIKGNKTCEVCKQE 307
Query: 152 AHNVA 156
N+
Sbjct: 308 VKNLP 312
>AT2G45530.1 | Symbols: | RING/U-box superfamily protein |
chr2:18756604-18757326 FORWARD LENGTH=240
Length = 240
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%)
Query: 115 IELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHNVAGAIEVQMTEQW 167
IELGC C+ LA AH+ C +AWF+ KG+ CEIC +A NV T W
Sbjct: 86 IELGCQCRGGLAKAHRSCIDAWFRTKGSNQCEICQVVAVNVTPPETQPTTNYW 138
>AT5G63780.1 | Symbols: SHA1 | RING/FYVE/PHD zinc finger superfamily
protein | chr5:25525160-25526446 FORWARD LENGTH=367
Length = 367
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 86 VHLAKVERDCRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTC 145
+ L + + IC ++M + + +ELGCSCK++LA H CA WF G+ C
Sbjct: 107 IELTSPDAEVFICTNDIEMGIQQHQDAL-LELGCSCKNELALVHYACALKWFLNHGSTVC 165
Query: 146 EICGSIAHNVAGA 158
EICG A N+ A
Sbjct: 166 EICGHPAENIKTA 178
>AT3G06330.3 | Symbols: | RING/U-box superfamily protein |
chr3:1917334-1919330 FORWARD LENGTH=363
Length = 363
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 95 CRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHN 154
CRIC +D+ E G +++ CSCK DL H+ CA WF KG +TC++C + N
Sbjct: 218 CRIC---LDVC----EEGNTLKMECSCKGDLRLVHEACAMKWFSTKGTRTCDVCRQVVQN 270
Query: 155 VAGAIEVQMTEQWNEANDXXXXXXXXXXXXXETRNFWQGHRFLNFLLACMVFAFVISWLF 214
+ + + N+ N+ +T + WQ L L++ + + F + L
Sbjct: 271 L--PVTLVRVPTPNQQNN--RRGSSQQNMPSQTVSAWQEFVVL-VLISTVCYFFFLEQLL 325
>AT3G06330.1 | Symbols: | RING/U-box superfamily protein |
chr3:1917334-1919709 FORWARD LENGTH=426
Length = 426
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 95 CRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHN 154
CRIC +D+ E G +++ CSCK DL H+ CA WF KG +TC++C + N
Sbjct: 218 CRIC---LDVC----EEGNTLKMECSCKGDLRLVHEACAMKWFSTKGTRTCDVCRQVVQN 270
Query: 155 VA-GAIEVQMTEQWN 168
+ + V Q N
Sbjct: 271 LPVTLVRVPTPNQQN 285
>AT5G03180.1 | Symbols: | RING/U-box superfamily protein |
chr5:754201-756411 REVERSE LENGTH=462
Length = 462
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 95 CRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHN 154
CRIC + M +E ++ C CK +LA AHK C WF IKGN TC++C N
Sbjct: 247 CRICMVEM------EEDEEAFKMECMCKGELALAHKTCTIKWFTIKGNITCDVCKQEVRN 300
Query: 155 VAGAI 159
+ +
Sbjct: 301 LPVTL 305
>AT5G03180.2 | Symbols: | RING/U-box superfamily protein |
chr5:754201-756411 REVERSE LENGTH=466
Length = 466
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 95 CRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHN 154
CRIC + M +E ++ C CK +LA AHK C WF IKGN TC++C N
Sbjct: 251 CRICMVEM------EEDEEAFKMECMCKGELALAHKTCTIKWFTIKGNITCDVCKQEVRN 304
Query: 155 VAGAI 159
+ +
Sbjct: 305 LPVTL 309
>AT3G06330.2 | Symbols: | RING/U-box superfamily protein |
chr3:1918512-1919709 FORWARD LENGTH=257
Length = 257
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 95 CRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHN 154
CRIC +D+ E G +++ CSCK DL H+ CA WF KG +TC++C + N
Sbjct: 49 CRIC---LDVC----EEGNTLKMECSCKGDLRLVHEACAMKWFSTKGTRTCDVCRQVVQN 101
Query: 155 V-AGAIEVQMTEQWN 168
+ + V Q N
Sbjct: 102 LPVTLVRVPTPNQQN 116
>AT5G08750.3 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:2852912-2854343 FORWARD LENGTH=370
Length = 370
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 115 IELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHNV 155
+ELGCSCK+DLA H CA WF G+ CEICG N+
Sbjct: 130 LELGCSCKNDLALVHYACALKWFVNHGSTVCEICGKTTENI 170
>AT5G08750.2 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:2853066-2854343 FORWARD LENGTH=363
Length = 363
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 115 IELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHNV 155
+ELGCSCK+DLA H CA WF G+ CEICG N+
Sbjct: 123 LELGCSCKNDLALVHYACALKWFVNHGSTVCEICGKTTENI 163
>AT5G08750.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:2853066-2854343 FORWARD LENGTH=363
Length = 363
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 115 IELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHNV 155
+ELGCSCK+DLA H CA WF G+ CEICG N+
Sbjct: 123 LELGCSCKNDLALVHYACALKWFVNHGSTVCEICGKTTENI 163
>AT3G09760.1 | Symbols: | RING/U-box superfamily protein |
chr3:2992975-2995451 REVERSE LENGTH=491
Length = 491
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 95 CRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHN 154
CRIC + + E ++ C C+ +LA AHK+C WF IKGN+TC++C N
Sbjct: 266 CRICLVELG------EDSEAFKMECLCRGELALAHKECTIKWFTIKGNRTCDVCKQEVQN 319
Query: 155 VA 156
+
Sbjct: 320 LP 321
>AT5G18760.1 | Symbols: | RING/U-box superfamily protein |
chr5:6258508-6260828 REVERSE LENGTH=411
Length = 411
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 95 CRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHN 154
CRIC +D+ E G +++ CSCK DL H+ CA WF KG + C++C N
Sbjct: 203 CRIC---LDVC----EEGNTLKMECSCKGDLRLVHEHCAIKWFSTKGTRICDVCRQEVRN 255
Query: 155 VA 156
+
Sbjct: 256 LP 257