Miyakogusa Predicted Gene

Lj0g3v0298839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0298839.1 Non Chatacterized Hit- tr|I3SY08|I3SY08_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,100,6e-37,no
description,NULL; Sm-like ribonucleoproteins,Like-Sm (LSM) domain;
snRNP Sm proteins,Ribonucleopr,CUFF.20069.1
         (78 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30220.1 | Symbols: RUXF | small nuclear ribonucleoprotein F ...   149   4e-37
AT4G30220.2 | Symbols: RUXF | small nuclear ribonucleoprotein F ...   145   4e-36
AT2G14285.1 | Symbols:  | Small nuclear ribonucleoprotein family...    97   2e-21
AT3G59810.1 | Symbols:  | Small nuclear ribonucleoprotein family...    74   2e-14
AT2G43810.2 | Symbols:  | Small nuclear ribonucleoprotein family...    74   2e-14
AT2G43810.1 | Symbols:  | Small nuclear ribonucleoprotein family...    74   2e-14

>AT4G30220.1 | Symbols: RUXF | small nuclear ribonucleoprotein F |
          chr4:14803100-14804259 REVERSE LENGTH=88
          Length = 88

 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/78 (91%), Positives = 74/78 (94%)

Query: 1  MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60
          MATIPVNPKPFLNNLTGK VIVKLKWGMEYKG+L SVDSYMNLQL NTEEYI+GQ TGNL
Sbjct: 1  MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 60

Query: 61 GEILIRCNNVLYLRGVPE 78
          GEILIRCNNVLY+RGVPE
Sbjct: 61 GEILIRCNNVLYVRGVPE 78


>AT4G30220.2 | Symbols: RUXF | small nuclear ribonucleoprotein F |
          chr4:14803100-14804259 REVERSE LENGTH=96
          Length = 96

 Score =  145 bits (367), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/78 (88%), Positives = 73/78 (93%)

Query: 1  MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60
          + TIPVNPKPFLNNLTGK VIVKLKWGMEYKG+L SVDSYMNLQL NTEEYI+GQ TGNL
Sbjct: 9  LQTIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 68

Query: 61 GEILIRCNNVLYLRGVPE 78
          GEILIRCNNVLY+RGVPE
Sbjct: 69 GEILIRCNNVLYVRGVPE 86


>AT2G14285.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:6052612-6053500 REVERSE LENGTH=61
          Length = 61

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/51 (88%), Positives = 48/51 (94%)

Query: 28 MEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRCNNVLYLRGVPE 78
          MEYKG+L SVDSYMNLQL NTEEYI+GQ TGNLGEILIRCNNVLY+RGVPE
Sbjct: 1  MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPE 51


>AT3G59810.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr3:22096841-22097666 FORWARD LENGTH=91
          Length = 91

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%)

Query: 8  PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRC 67
          P  FL ++ G+PV+VKL  G++Y+G L  +D YMN+ +  TEEY+ GQ     G+  IR 
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74

Query: 68 NNVLYLRGV 76
          NNVLY+  V
Sbjct: 75 NNVLYISTV 83


>AT2G43810.2 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:18149725-18150879 FORWARD LENGTH=91
          Length = 91

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%)

Query: 8  PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRC 67
          P  FL ++ GKPV+VKL  G++Y+G L  +D YMN+ +  TEEY+ GQ     G+  +R 
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74

Query: 68 NNVLYL 73
          NNVLY+
Sbjct: 75 NNVLYI 80


>AT2G43810.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:18149725-18150879 FORWARD LENGTH=91
          Length = 91

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%)

Query: 8  PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRC 67
          P  FL ++ GKPV+VKL  G++Y+G L  +D YMN+ +  TEEY+ GQ     G+  +R 
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74

Query: 68 NNVLYL 73
          NNVLY+
Sbjct: 75 NNVLYI 80