Miyakogusa Predicted Gene

Lj0g3v0298719.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0298719.2 Non Chatacterized Hit- tr|I1L4B1|I1L4B1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.14183
PE,23.33,0.021,seg,NULL; no description,NULL;
Hemerythrin,Haemerythrin/HHE cation-binding motif,CUFF.20062.2
         (338 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54290.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   256   1e-68

>AT3G54290.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: N-terminal protein myristoylation; LOCATED
           IN: chloroplast; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Haemerythrin/HHE cation-binding motif
           (InterPro:IPR012312); Has 59 Blast hits to 59 proteins
           in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0;
           Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes -
           1 (source: NCBI BLink). | chr3:20104623-20105845 REVERSE
           LENGTH=350
          Length = 350

 Score =  256 bits (654), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/354 (40%), Positives = 200/354 (56%), Gaps = 57/354 (16%)

Query: 1   MGNCLGSSEKLTAEIVPH----------------------------GGATAYPTVRLHGS 32
           MG C  SS K TAEI P                                +   TVRL+G 
Sbjct: 1   MGTCFSSSTKSTAEISPFDLVVKPPPPSAAATAPPTQRIPTAKTETSTVSFTATVRLYGP 60

Query: 33  PNSIVAAYIGFANLPNTIXXXXXXXXXXXXXXXXXXARVGRSAWIRPVTQQVGAGAEWGS 92
           PNS+V +Y+ FA L   +                   R   S   +P T QVG+    GS
Sbjct: 61  PNSLVTSYLRFALLHKKVPL-----------------RFVPSEDQKP-TIQVGSETVSGS 102

Query: 93  RDALVQFIDARFPDLS------AIGGGEEETTTASLMVRVTRLQHKSMTWHVERMVRWGE 146
           R+ L+++I+ +FP+         + G +E T    L+V++  LQH+SM WH+ERM+RW E
Sbjct: 103 REVLLRYIEDKFPEPRLMIWKFNLEGFDEAT---PLIVKMIWLQHRSMLWHMERMLRWSE 159

Query: 147 DLATRGGRKAVDPKVGSWRMEMRKFGKSYSEVLEVMMEHARMEETVLFPILDAADRGLCK 206
           DLA RGG+KAVDP VG+ +ME+RKF KSY+ + E+M+EHA+MEE +LFP+L++ DRG+CK
Sbjct: 160 DLAARGGKKAVDPSVGTPKMEIRKFAKSYTHLQELMLEHAQMEERILFPVLESVDRGMCK 219

Query: 207 AAKEEHARDLPIMNGIKEIIKSIEVLESSSPKYRDVLYTLSARLKSLQGQCKQHFXXXXX 266
           +A EEH R+LP+MNGIKE IKSI VL+S      + L++L++R KSLQ  CK HF     
Sbjct: 220 SANEEHGRELPMMNGIKEDIKSIGVLDSGI--CSEALFSLASRFKSLQMMCKTHFEEEEK 277

Query: 267 XXXXXXXXXXXSKEQDESALEECFHVMQGTHNRLLKFLLEGLSPHDAMQYLDLI 320
                       KE+ +  + +   VM GTH+    FLLEGL+P +AMQY+DL+
Sbjct: 278 DLLPMVEAAEMGKEKQKKLMNQSLEVMSGTHSNSFDFLLEGLTPQEAMQYIDLL 331