Miyakogusa Predicted Gene

Lj0g3v0297619.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0297619.1 tr|Q6V0J6|Q6V0J6_BRACM Reduced vernalization
response 1 OS=Brassica campestris PE=2
SV=1,59.34,4e-18,seg,NULL,gene.g23149.t1.1
         (274 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional...   109   2e-24
AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 | chr1...    95   5e-20

>AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
           factor family protein | chr3:6549077-6551568 REVERSE
           LENGTH=341
          Length = 341

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 111/240 (46%), Gaps = 70/240 (29%)

Query: 2   YEGNSSFIVHIFNMSTSEVNYQSAVRSRNEGPVFTNYHH-----IFVEMEDTDSFEFMDS 56
           YEGNS+F V+IFN+S SE+NY S       G + + ++H     +F ++ED D+      
Sbjct: 84  YEGNSAFSVYIFNLSHSEINYHST------GLMDSAHNHFKRARLFEDLEDEDAEVIF-- 135

Query: 57  SPSNLTPGSLQNKVFGGSVDQLTPGKNQSPARQNLFNGGSKLNRVNWGDSGSPFPSKDAN 116
            PS++ P                                            SP P     
Sbjct: 136 -PSSVYP--------------------------------------------SPLPESTVP 150

Query: 117 SQGNHSTRDIGVQFNAVEFKRSTEELKLRYPNNEEGVSKTVKRKRK-SEPKTVDGQXXXX 175
           +   +++  I   F        T  +K   P     + K   RK+K ++P+ ++      
Sbjct: 151 ANKGYASSAIQTLF--------TGPVKAEEPTPTPKIPKKRGRKKKNADPEEINSSAPRD 202

Query: 176 XXXXXXXMRYRFYESASARKRTVTAEERERAINDAKAFEPANPFCRVVLRPSYLYRGCIM 235
                   R +FYESASARKRTVTAEERERAIN AK FEP NPF RVVLRPSYLYRGCIM
Sbjct: 203 DDPEN---RSKFYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIM 259


>AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 |
           chr1:18314596-18315460 REVERSE LENGTH=226
          Length = 226

 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 47/52 (90%)

Query: 184 RYRFYESASARKRTVTAEERERAINDAKAFEPANPFCRVVLRPSYLYRGCIM 235
           R +FYESASARKRTVTAEERERA+N AK FEP NP+ RVVLRPSYLYRGCIM
Sbjct: 93  RSKFYESASARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIM 144