Miyakogusa Predicted Gene

Lj0g3v0297489.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0297489.1 tr|G7KIE2|G7KIE2_MEDTR F-box family protein
OS=Medicago truncatula GN=MTR_6g042480 PE=4 SV=1,35.42,4e-16,seg,NULL;
F-box domain,F-box domain, cyclin-like; no
description,NULL,CUFF.19958.1
         (362 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00755.2 | Symbols:  | F-box family protein | chr4:325294-326...   261   5e-70
AT4G00755.1 | Symbols:  | F-box family protein | chr4:325294-326...   261   5e-70

>AT4G00755.2 | Symbols:  | F-box family protein | chr4:325294-326787
           FORWARD LENGTH=377
          Length = 377

 Score =  261 bits (667), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 141/314 (44%), Positives = 192/314 (61%), Gaps = 7/314 (2%)

Query: 8   VDFIQLLEPDMSIKILNHLDDPCDLVRVSIVSSSWHRFVIENGLCKRLCLRMFPEISHVA 67
           +DF+  L+ D S+ IL+ LDDP D+VR S VS SW +FV++  L K LCL++F ++S+V 
Sbjct: 1   MDFVNNLDTDTSLSILSCLDDPSDIVRASAVSRSWRQFVVKYSLSKNLCLKLFHQLSNVD 60

Query: 68  HSIELGN-----MIEPVCNVLDNWECLKRNHKVYAFLASG-LTPTWKNCISEAISASSTD 121
           H IE  N       E   + L +   L++ H+ +A LA G ++   ++CI++AI ASSTD
Sbjct: 61  HIIETSNDRNGESSEAGSSSLMDTRLLEKEHRAFALLARGCMSSPIESCIADAIRASSTD 120

Query: 122 NYPEESIQNTLEPRDRTENRLLYWSSKGESDPSVPETLGYQLISKLCLVTEIHVQPFQAY 181
           NYP ESI NTLE RDR      YWSS G+   +VPE+L Y+LI  LCL+TE+ + PFQAY
Sbjct: 121 NYPVESILNTLEKRDRIGRTPSYWSSTGQHKTTVPESLLYKLIGDLCLITEVSIHPFQAY 180

Query: 182 FQHGFPIYSAKAVRFRMGHPRYPMELESLVADDMAA-NRMLGDSQFIWTYTSPEFPMFQE 240
           FQ G PIYS+  VRFR+GH +      +   D      +   +S ++WTYTS EF M QE
Sbjct: 181 FQRGHPIYSSHYVRFRLGHEKDNSPHYNNSQDKKGEPGKSSIESNYVWTYTSQEFSMAQE 240

Query: 241 NRLQKFKLPEPXXXXXXXXXXXXXXRVQKQEMDELFYICISHVQVVGQPLSPAFDIKIHH 300
           NRLQ F+LPEP              RVQ QEMD  +YIC+SHV+V G+ L+ +F ++   
Sbjct: 241 NRLQSFQLPEPVLCIGGYLLVEFLGRVQTQEMDGQYYICVSHVKVEGRSLAKSFRVENVD 300

Query: 301 PSGKCTLKYFPQTD 314
            +GK  LK     D
Sbjct: 301 DNGKFGLKVLSYND 314


>AT4G00755.1 | Symbols:  | F-box family protein | chr4:325294-326787
           FORWARD LENGTH=377
          Length = 377

 Score =  261 bits (667), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 141/314 (44%), Positives = 192/314 (61%), Gaps = 7/314 (2%)

Query: 8   VDFIQLLEPDMSIKILNHLDDPCDLVRVSIVSSSWHRFVIENGLCKRLCLRMFPEISHVA 67
           +DF+  L+ D S+ IL+ LDDP D+VR S VS SW +FV++  L K LCL++F ++S+V 
Sbjct: 1   MDFVNNLDTDTSLSILSCLDDPSDIVRASAVSRSWRQFVVKYSLSKNLCLKLFHQLSNVD 60

Query: 68  HSIELGN-----MIEPVCNVLDNWECLKRNHKVYAFLASG-LTPTWKNCISEAISASSTD 121
           H IE  N       E   + L +   L++ H+ +A LA G ++   ++CI++AI ASSTD
Sbjct: 61  HIIETSNDRNGESSEAGSSSLMDTRLLEKEHRAFALLARGCMSSPIESCIADAIRASSTD 120

Query: 122 NYPEESIQNTLEPRDRTENRLLYWSSKGESDPSVPETLGYQLISKLCLVTEIHVQPFQAY 181
           NYP ESI NTLE RDR      YWSS G+   +VPE+L Y+LI  LCL+TE+ + PFQAY
Sbjct: 121 NYPVESILNTLEKRDRIGRTPSYWSSTGQHKTTVPESLLYKLIGDLCLITEVSIHPFQAY 180

Query: 182 FQHGFPIYSAKAVRFRMGHPRYPMELESLVADDMAA-NRMLGDSQFIWTYTSPEFPMFQE 240
           FQ G PIYS+  VRFR+GH +      +   D      +   +S ++WTYTS EF M QE
Sbjct: 181 FQRGHPIYSSHYVRFRLGHEKDNSPHYNNSQDKKGEPGKSSIESNYVWTYTSQEFSMAQE 240

Query: 241 NRLQKFKLPEPXXXXXXXXXXXXXXRVQKQEMDELFYICISHVQVVGQPLSPAFDIKIHH 300
           NRLQ F+LPEP              RVQ QEMD  +YIC+SHV+V G+ L+ +F ++   
Sbjct: 241 NRLQSFQLPEPVLCIGGYLLVEFLGRVQTQEMDGQYYICVSHVKVEGRSLAKSFRVENVD 300

Query: 301 PSGKCTLKYFPQTD 314
            +GK  LK     D
Sbjct: 301 DNGKFGLKVLSYND 314