Miyakogusa Predicted Gene

Lj0g3v0297399.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0297399.1 Non Chatacterized Hit- tr|D8G0N1|D8G0N1_9CYAN
Putative uncharacterized protein OS=Oscillatoria sp.
P,35.12,1e-18,seg,NULL; DUF1517,Protein of unknown function DUF1517;
PROKAR_LIPOPROTEIN,NULL,CUFF.19945.1
         (333 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54520.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   161   6e-40

>AT1G54520.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF1517 (InterPro:IPR010903); Has 276
           Blast hits to 275 proteins in 83 species: Archae - 0;
           Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113;
           Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
           | chr1:20363565-20365874 FORWARD LENGTH=391
          Length = 391

 Score =  161 bits (408), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 98/217 (45%), Positives = 129/217 (59%), Gaps = 36/217 (16%)

Query: 108 TDANTITLCKLQVAMFGGSKGSSIQRDLTRIAKAADTSSREGVSHLLTETIQALDRHPSY 167
           TD    ++ KLQV + G   G ++Q+D  R+A+++DTS+ EG+S++LTE   AL RHP Y
Sbjct: 204 TDTQKTSVIKLQVGLLG--LGRTLQQDFNRLAESSDTSTPEGLSYVLTEATLALLRHPDY 261

Query: 168 SIAGYSSVGQKQSMEDGKKCYDQLSNEERGKFDKETLVNLFNVEKRSQSINE---FINED 224
            I+ YSSV  K S+E G+K ++QLS EERGKFD+ETLVN+ +++++S  I +   F NE 
Sbjct: 262 CISCYSSVDVKPSIEKGEKRFNQLSIEERGKFDEETLVNVNSIKRQSSKIRKASGFSNE- 320

Query: 225 TSLNVKESTTESQKFXXXXXXXXXXXXYIVVTILVAAKGAHKLPN-NGAEDLKKALQXXX 283
                                      YIVVTIL+AA+G HKLP  NG  DLK+AL    
Sbjct: 321 ---------------------------YIVVTILMAAEGIHKLPPINGTTDLKEAL--LK 351

Query: 284 XXXXXXXXXXAGEVLWTPLKEGDTLSERKLLEDYPQL 320
                     A EVLWTP  E D LSER+LLEDYP L
Sbjct: 352 LGSIPRNKIMAVEVLWTPQNEADALSERELLEDYPLL 388