Miyakogusa Predicted Gene
- Lj0g3v0296609.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0296609.1 Non Chatacterized Hit- tr|K4BHJ8|K4BHJ8_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,55.56,3e-19,zf-C3HC4_3,NULL; ZF_RING_2,Zinc finger, RING-type;
no description,Zinc finger, RING/FYVE/PHD-type; I,TC79563.path1.1
(100 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G04460.3 | Symbols: | RING/U-box superfamily protein | chr5:... 154 9e-39
AT5G04460.1 | Symbols: | RING/U-box superfamily protein | chr5:... 154 9e-39
AT2G27950.1 | Symbols: | Ring/U-Box superfamily protein | chr2:... 145 5e-36
AT5G04460.2 | Symbols: | RING/U-box superfamily protein | chr5:... 86 4e-18
AT2G34920.1 | Symbols: EDA18 | RING/U-box superfamily protein | ... 76 4e-15
AT1G30860.1 | Symbols: | RING/U-box superfamily protein | chr1:... 70 3e-13
AT5G19080.1 | Symbols: | RING/U-box superfamily protein | chr5:... 52 1e-07
AT1G59560.1 | Symbols: ZCF61, DAL2 | E3 Ubiquitin ligase family ... 51 2e-07
AT3G06140.1 | Symbols: | RING/U-box superfamily protein | chr3:... 50 3e-07
>AT5G04460.3 | Symbols: | RING/U-box superfamily protein |
chr5:1260009-1263695 FORWARD LENGTH=863
Length = 863
Score = 154 bits (390), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 72/99 (72%), Positives = 85/99 (85%), Gaps = 1/99 (1%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRS+RQEVSAALNRSAG G S DG S+W V KG CCVCC+++ID+LL
Sbjct: 765 MDMQLELQRSVRQEVSAALNRSAGDQGMSAETSEDG-SRWSHVSKGTCCVCCDNHIDALL 823
Query: 61 YRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSI 99
YRCGH+CTCSKCANEL++NG KCP+C+AP++EVIRAYSI
Sbjct: 824 YRCGHMCTCSKCANELVRNGGKCPLCRAPIIEVIRAYSI 862
>AT5G04460.1 | Symbols: | RING/U-box superfamily protein |
chr5:1260009-1263695 FORWARD LENGTH=863
Length = 863
Score = 154 bits (390), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 72/99 (72%), Positives = 85/99 (85%), Gaps = 1/99 (1%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRS+RQEVSAALNRSAG G S DG S+W V KG CCVCC+++ID+LL
Sbjct: 765 MDMQLELQRSVRQEVSAALNRSAGDQGMSAETSEDG-SRWSHVSKGTCCVCCDNHIDALL 823
Query: 61 YRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSI 99
YRCGH+CTCSKCANEL++NG KCP+C+AP++EVIRAYSI
Sbjct: 824 YRCGHMCTCSKCANELVRNGGKCPLCRAPIIEVIRAYSI 862
>AT2G27950.1 | Symbols: | Ring/U-Box superfamily protein |
chr2:11899422-11903171 REVERSE LENGTH=839
Length = 839
Score = 145 bits (366), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 83/100 (83%), Gaps = 3/100 (3%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSG-THDCESPDGKSKWECVRKGLCCVCCESNIDSL 59
M+MQLELQRSIRQEVSAA++RS G + D S +SKWE VRKG+CCVCCESNIDSL
Sbjct: 741 MEMQLELQRSIRQEVSAAMHRSTDQPGPSKDTASY--ESKWEYVRKGICCVCCESNIDSL 798
Query: 60 LYRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSI 99
LYRCGH+ TC KCA +L++ G KCPMCQAPV+EV+RAYSI
Sbjct: 799 LYRCGHMNTCEKCAKKLVEAGGKCPMCQAPVIEVVRAYSI 838
>AT5G04460.2 | Symbols: | RING/U-box superfamily protein |
chr5:1260009-1263502 FORWARD LENGTH=825
Length = 825
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRS+RQEVSAALNRSAG G S DG S+W V KG CCVCC+++ID+LL
Sbjct: 765 MDMQLELQRSVRQEVSAALNRSAGDQGMSAETSEDG-SRWSHVSKGTCCVCCDNHIDALL 823
Query: 61 YR 62
YR
Sbjct: 824 YR 825
>AT2G34920.1 | Symbols: EDA18 | RING/U-box superfamily protein |
chr2:14728375-14730816 REVERSE LENGTH=652
Length = 652
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 42/53 (79%)
Query: 45 KGLCCVCCESNIDSLLYRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAY 97
K CCVC E+ +++LLYRCGH+CTC +CANEL NG KCP+C A +++V+R +
Sbjct: 595 KRKCCVCNETQVETLLYRCGHMCTCLRCANELQYNGGKCPICHAKILDVVRVF 647
>AT1G30860.1 | Symbols: | RING/U-box superfamily protein |
chr1:10986696-10989246 REVERSE LENGTH=730
Length = 730
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 44/60 (73%)
Query: 37 KSKWECVRKGLCCVCCESNIDSLLYRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRA 96
K+ E K CCVC E+ ++++LYRCGH+C C KCANEL +G KCP+C+A +V+V+R
Sbjct: 665 KAHQENPMKRKCCVCDETQVEAVLYRCGHMCMCLKCANELHWSGGKCPICRAQIVDVVRV 724
>AT5G19080.1 | Symbols: | RING/U-box superfamily protein |
chr5:6378400-6380287 FORWARD LENGTH=378
Length = 378
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 48 CCVCCESNIDSLLYRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIR 95
C +C D+ + C HLC CS CA EL KCP+C+ P+ E+++
Sbjct: 321 CVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHELVK 368
>AT1G59560.1 | Symbols: ZCF61, DAL2 | E3 Ubiquitin ligase family
protein | chr1:21881741-21883632 FORWARD LENGTH=338
Length = 338
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 18/93 (19%)
Query: 8 QRSIRQEVSAALNRS---AGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLLYRCG 64
Q ++++ V AA R+ G + D ++PD LC VC + ++ CG
Sbjct: 259 QFALKRVVDAAARRAKPVTGGGTSRDGDTPD-----------LCVVCLDQKYNTAFVECG 307
Query: 65 HLCTCSKCANELLQNGRKCPMCQAPVVEVIRAY 97
H+C C+ C+ +L R CP+C+ + +V++ Y
Sbjct: 308 HMCCCTPCSLQL----RTCPLCRERIQQVLKIY 336
>AT3G06140.1 | Symbols: | RING/U-box superfamily protein |
chr3:1856993-1858777 REVERSE LENGTH=359
Length = 359
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 48 CCVCCESNIDSLLYRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVI 94
C +C D+ + C HLC CS CA EL KCP+C+ P+ E++
Sbjct: 302 CVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELL 348