Miyakogusa Predicted Gene

Lj0g3v0296579.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0296579.1 Non Chatacterized Hit- tr|K3ZR41|K3ZR41_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si029071,30.17,2e-18,seg,NULL; coiled-coil,NULL,CUFF.19979.1
         (389 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27950.1 | Symbols:  | Ring/U-Box superfamily protein | chr2:...   147   2e-35
AT5G04460.2 | Symbols:  | RING/U-box superfamily protein | chr5:...   106   2e-23
AT5G04460.3 | Symbols:  | RING/U-box superfamily protein | chr5:...   106   3e-23
AT5G04460.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   106   3e-23

>AT2G27950.1 | Symbols:  | Ring/U-Box superfamily protein |
           chr2:11899422-11903171 REVERSE LENGTH=839
          Length = 839

 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 143/400 (35%), Positives = 197/400 (49%), Gaps = 47/400 (11%)

Query: 1   MSSQQRSVSSGDNREEPSAEIDTQMERVRDGFVVNQSEGQIELTRRGIRKLCGRQVMLDM 60
           M+SQQR  + GD REE   E   Q+ERV DG VVN +  Q E  RRGIRKLCGRQV +DM
Sbjct: 186 MNSQQRP-ALGDLREEQPIEGANQIERVLDGIVVNPNSIQNEHARRGIRKLCGRQVWVDM 244

Query: 61  LKKAXXXXXXXXXXLLDHRSVSQFPHRNRIQALLRGRILRNDRAVDHNRSTSVAESELGF 120
           LK A          L+ H +VS F HRNRIQALLRGR LRN    D  + TS A +ELGF
Sbjct: 245 LKMAEMERQRELEGLMQHHAVSNFAHRNRIQALLRGRFLRNGDNDDKEKPTSSAATELGF 304

Query: 121 LRRKQTVSGLREGFVSRKDNTGCSQATSNLSDTSSNIDADFNANVQTGASSSHLVLSIH- 179
           LR + TVS LRE F+SR D +   QA+S+ S+TSSN + D N   Q      + + SI+ 
Sbjct: 305 LRERHTVSELREEFISRLDRSASGQASSSHSETSSNAETDHNRGEQNDL---NCLDSIND 361

Query: 180 ----SEQSG--PDNEGSNGLGISGGQNCFQVTGCENLDRQGSSALAEDRLQIEPVDWQPS 233
               S+Q+G   DN+ S     + G+ C +           S++L E   ++E   WQ S
Sbjct: 362 ADGGSDQNGREADNQSSLDEITNSGRCCSR-----------STSLEERTARVE--GWQRS 408

Query: 234 ----FSVGVERSDD--AGQNAEVMSTQDTANELTHQSLQIEDSEHSDNQEFSEVHNETSE 287
               FS   +R +D     NA   S+     +      Q+ ++     ++  ++  E + 
Sbjct: 409 EIDDFS---QRRNDTEVDLNATGCSSSSIHGDEIRYGCQLRETIEIPYEQSLQISEEIAT 465

Query: 288 LGDIRXXXXXXXXXXXXXXXXTVDMNWIDESSALEGEQPEEVIQNEGSDWHQSN---TEW 344
           +G I                       I+ +  LE EQ  E ++NE SDW   N   + W
Sbjct: 466 MGPINRTTNFQENLGES----------INLTVTLE-EQTVEQMENEESDWQLINGATSAW 514

Query: 345 RNSTDESVDDNQHSNTTNEWHENSLANEDGENSRLQEAPE 384
           R+  +E  D +   N  N+  + S  +ED E + L E  E
Sbjct: 515 RDDAEEEADTDVPENFPNQLSQLSSVDEDREANILGELTE 554


>AT5G04460.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:1260009-1263502 FORWARD LENGTH=825
          Length = 825

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 97/165 (58%), Gaps = 13/165 (7%)

Query: 5   QRSVSSGDNREEPSAEIDTQMERVRDGFVVNQSEGQIELTRRGIRKLCGRQVMLDMLKKA 64
           QRS S  D   + + ++D    RVR G  VN  EGQ    RR +R++ GRQ +LD+L +A
Sbjct: 314 QRSTSEADRNHDAAPQVD----RVRVGLAVNHEEGQPPHVRRDLRRVRGRQALLDLLMRA 369

Query: 65  XXXXXXXXXXLLDHRSVSQFPHRNRIQALLRGRILRNDRAVDHNRSTSVAESELGFLRRK 124
                     LL+HR+VS F HRNRIQ+LLRGR LRN+R     R+ S+A  EL  LR +
Sbjct: 370 ERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTPSMASRELLQLRER 429

Query: 125 QTVSGLREGFVSRKDNTGCSQATSNLSDTSSNIDADFNANVQTGA 169
           QTVSGLREGF + ++N         + + +SN D D N+N  T A
Sbjct: 430 QTVSGLREGFHNGRENI--------VHENTSNTDND-NSNTSTNA 465


>AT5G04460.3 | Symbols:  | RING/U-box superfamily protein |
           chr5:1260009-1263695 FORWARD LENGTH=863
          Length = 863

 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 97/165 (58%), Gaps = 13/165 (7%)

Query: 5   QRSVSSGDNREEPSAEIDTQMERVRDGFVVNQSEGQIELTRRGIRKLCGRQVMLDMLKKA 64
           QRS S  D   + + ++D    RVR G  VN  EGQ    RR +R++ GRQ +LD+L +A
Sbjct: 314 QRSTSEADRNHDAAPQVD----RVRVGLAVNHEEGQPPHVRRDLRRVRGRQALLDLLMRA 369

Query: 65  XXXXXXXXXXLLDHRSVSQFPHRNRIQALLRGRILRNDRAVDHNRSTSVAESELGFLRRK 124
                     LL+HR+VS F HRNRIQ+LLRGR LRN+R     R+ S+A  EL  LR +
Sbjct: 370 ERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTPSMASRELLQLRER 429

Query: 125 QTVSGLREGFVSRKDNTGCSQATSNLSDTSSNIDADFNANVQTGA 169
           QTVSGLREGF + ++N         + + +SN D D N+N  T A
Sbjct: 430 QTVSGLREGFHNGRENI--------VHENTSNTDND-NSNTSTNA 465


>AT5G04460.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:1260009-1263695 FORWARD LENGTH=863
          Length = 863

 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 97/165 (58%), Gaps = 13/165 (7%)

Query: 5   QRSVSSGDNREEPSAEIDTQMERVRDGFVVNQSEGQIELTRRGIRKLCGRQVMLDMLKKA 64
           QRS S  D   + + ++D    RVR G  VN  EGQ    RR +R++ GRQ +LD+L +A
Sbjct: 314 QRSTSEADRNHDAAPQVD----RVRVGLAVNHEEGQPPHVRRDLRRVRGRQALLDLLMRA 369

Query: 65  XXXXXXXXXXLLDHRSVSQFPHRNRIQALLRGRILRNDRAVDHNRSTSVAESELGFLRRK 124
                     LL+HR+VS F HRNRIQ+LLRGR LRN+R     R+ S+A  EL  LR +
Sbjct: 370 ERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTPSMASRELLQLRER 429

Query: 125 QTVSGLREGFVSRKDNTGCSQATSNLSDTSSNIDADFNANVQTGA 169
           QTVSGLREGF + ++N         + + +SN D D N+N  T A
Sbjct: 430 QTVSGLREGFHNGRENI--------VHENTSNTDND-NSNTSTNA 465