Miyakogusa Predicted Gene

Lj0g3v0296529.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0296529.1 Non Chatacterized Hit- tr|I1JPI6|I1JPI6_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max PE=4,61.97,2e-19,
,CUFF.19874.1
         (149 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52660.2 | Symbols:  | Homeodomain-like superfamily protein |...   140   3e-34
AT5G52660.1 | Symbols:  | Homeodomain-like superfamily protein |...   139   5e-34
AT1G01520.1 | Symbols:  | Homeodomain-like superfamily protein |...   117   3e-27
AT4G01280.1 | Symbols:  | Homeodomain-like superfamily protein |...   117   4e-27
AT4G01280.2 | Symbols:  | Homeodomain-like superfamily protein |...   117   4e-27
AT5G02840.3 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-6512...    94   3e-20
AT3G09600.1 | Symbols:  | Homeodomain-like superfamily protein |...    93   5e-20
AT5G02840.2 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-6512...    90   6e-19
AT5G02840.1 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-6512...    90   6e-19
AT3G09600.2 | Symbols:  | Homeodomain-like superfamily protein |...    84   3e-17

>AT5G52660.2 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:21359423-21362037 REVERSE LENGTH=331
          Length = 331

 Score =  140 bits (354), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 6/134 (4%)

Query: 1   MLKTPTINTAVSSWSNHTLQTTNLLHVPKVNNSCSSSES-----TPKVRPVGESNGQGNN 55
           ML T     A + W+N+  QT +   +PK     +++ S     TP+ R   ++   GN 
Sbjct: 178 MLMTSPTTAAAAPWTNNA-QTISFTPLPKAGAGANNNCSSSSENTPRPRSNRDARDHGNV 236

Query: 56  SHPLRVLPDFSQVYGFIGSVFDPDATEHVQRLKQMDRIDVETVLLLMRNLSINLTSPDFE 115
            H LRVLPDF+QVYGFIGSVFDP A+ H+Q+LK+MD IDVETVLLLMRNLSINL+SPDFE
Sbjct: 237 GHSLRVLPDFAQVYGFIGSVFDPYASNHLQKLKKMDPIDVETVLLLMRNLSINLSSPDFE 296

Query: 116 DHRKLLSSYEAEVE 129
           DHR+LLSSY+   E
Sbjct: 297 DHRRLLSSYDIGSE 310


>AT5G52660.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:21359423-21362037 REVERSE LENGTH=330
          Length = 330

 Score =  139 bits (351), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 74/133 (55%), Positives = 93/133 (69%), Gaps = 5/133 (3%)

Query: 1   MLKTPTINTAVSSWSNHTLQTTNLLHVPKVNNSCSSSES----TPKVRPVGESNGQGNNS 56
           ML T     A + W+N+  QT +   +PK   + ++  S    TP+ R   ++   GN  
Sbjct: 178 MLMTSPTTAAAAPWTNNA-QTISFTPLPKGAGANNNCSSSSENTPRPRSNRDARDHGNVG 236

Query: 57  HPLRVLPDFSQVYGFIGSVFDPDATEHVQRLKQMDRIDVETVLLLMRNLSINLTSPDFED 116
           H LRVLPDF+QVYGFIGSVFDP A+ H+Q+LK+MD IDVETVLLLMRNLSINL+SPDFED
Sbjct: 237 HSLRVLPDFAQVYGFIGSVFDPYASNHLQKLKKMDPIDVETVLLLMRNLSINLSSPDFED 296

Query: 117 HRKLLSSYEAEVE 129
           HR+LLSSY+   E
Sbjct: 297 HRRLLSSYDIGSE 309


>AT1G01520.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr1:190596-192139 FORWARD LENGTH=287
          Length = 287

 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 74/97 (76%), Gaps = 2/97 (2%)

Query: 32  NSCSSSESTPK--VRPVGESNGQGNNSHPLRVLPDFSQVYGFIGSVFDPDATEHVQRLKQ 89
           N CS+S S  K   R V E+N Q +   P RV P+F++VY FIGSVFDP  T HV+RLK+
Sbjct: 190 NCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKTTGHVKRLKE 249

Query: 90  MDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYEA 126
           MD I++ETVLLLM+NLS+NLTSP+F++ RKL+SSY A
Sbjct: 250 MDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNA 286


>AT4G01280.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr4:535288-536854 FORWARD LENGTH=302
          Length = 302

 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 76/102 (74%), Gaps = 1/102 (0%)

Query: 27  VPKVNNSCSSSESTPKVRPVGESNGQGNNSHPLRVLPDFSQVYGFIGSVFDPDATEHVQR 86
            P  NN C   E T +VR V + N + +   P RV+P+F++VY FIGSVFDP+ + H+QR
Sbjct: 200 APLPNNRCRQ-EDTERVRAVTKPNNEESCEKPHRVMPNFAEVYSFIGSVFDPNTSGHLQR 258

Query: 87  LKQMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYEAEV 128
           LKQMD I++ETVLLLM+NLS+NLTSP+F + R+L+SSY A+ 
Sbjct: 259 LKQMDPINMETVLLLMQNLSVNLTSPEFAEQRRLISSYSAKA 300


>AT4G01280.2 | Symbols:  | Homeodomain-like superfamily protein |
           chr4:535288-536854 FORWARD LENGTH=303
          Length = 303

 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 76/102 (74%), Gaps = 1/102 (0%)

Query: 27  VPKVNNSCSSSESTPKVRPVGESNGQGNNSHPLRVLPDFSQVYGFIGSVFDPDATEHVQR 86
            P  NN C   E T +VR V + N + +   P RV+P+F++VY FIGSVFDP+ + H+QR
Sbjct: 201 APLPNNRCRQ-EDTERVRAVTKPNNEESCEKPHRVMPNFAEVYSFIGSVFDPNTSGHLQR 259

Query: 87  LKQMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYEAEV 128
           LKQMD I++ETVLLLM+NLS+NLTSP+F + R+L+SSY A+ 
Sbjct: 260 LKQMDPINMETVLLLMQNLSVNLTSPEFAEQRRLISSYSAKA 301


>AT5G02840.3 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-651204
           FORWARD LENGTH=283
          Length = 283

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 69/96 (71%), Gaps = 9/96 (9%)

Query: 37  SESTPKVRPVGESNGQGNNSHPLRV---------LPDFSQVYGFIGSVFDPDATEHVQRL 87
           SE++P    +G S+   ++S  LR+         LPDF++VY FIGSVFDPD+   +++L
Sbjct: 188 SETSPSASGIGSSSRTLSDSKGLRLAKQAPSMHGLPDFAEVYNFIGSVFDPDSKGRMKKL 247

Query: 88  KQMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSS 123
           K+MD I+ ETVLLLMRNL++NL++PDFE  RK++++
Sbjct: 248 KEMDPINFETVLLLMRNLTVNLSNPDFEPTRKVMNT 283


>AT3G09600.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:2946459-2948270 FORWARD LENGTH=298
          Length = 298

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 55/67 (82%)

Query: 59  LRVLPDFSQVYGFIGSVFDPDATEHVQRLKQMDRIDVETVLLLMRNLSINLTSPDFEDHR 118
           L  +PDF++VY FIGSVFDP+   HV++LK+MD I+ ETVLLLMRNL++NL++PD E  R
Sbjct: 210 LHGVPDFAEVYNFIGSVFDPETRGHVEKLKEMDPINFETVLLLMRNLTVNLSNPDLESTR 269

Query: 119 KLLSSYE 125
           K+L SY+
Sbjct: 270 KVLLSYD 276


>AT5G02840.2 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-651212
           FORWARD LENGTH=293
          Length = 293

 Score = 89.7 bits (221), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 63/88 (71%), Gaps = 9/88 (10%)

Query: 37  SESTPKVRPVGESNGQGNNSHPLRV---------LPDFSQVYGFIGSVFDPDATEHVQRL 87
           SE++P    +G S+   ++S  LR+         LPDF++VY FIGSVFDPD+   +++L
Sbjct: 188 SETSPSASGIGSSSRTLSDSKGLRLAKQAPSMHGLPDFAEVYNFIGSVFDPDSKGRMKKL 247

Query: 88  KQMDRIDVETVLLLMRNLSINLTSPDFE 115
           K+MD I+ ETVLLLMRNL++NL++PDFE
Sbjct: 248 KEMDPINFETVLLLMRNLTVNLSNPDFE 275


>AT5G02840.1 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-651212
           FORWARD LENGTH=293
          Length = 293

 Score = 89.7 bits (221), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 63/88 (71%), Gaps = 9/88 (10%)

Query: 37  SESTPKVRPVGESNGQGNNSHPLRV---------LPDFSQVYGFIGSVFDPDATEHVQRL 87
           SE++P    +G S+   ++S  LR+         LPDF++VY FIGSVFDPD+   +++L
Sbjct: 188 SETSPSASGIGSSSRTLSDSKGLRLAKQAPSMHGLPDFAEVYNFIGSVFDPDSKGRMKKL 247

Query: 88  KQMDRIDVETVLLLMRNLSINLTSPDFE 115
           K+MD I+ ETVLLLMRNL++NL++PDFE
Sbjct: 248 KEMDPINFETVLLLMRNLTVNLSNPDFE 275


>AT3G09600.2 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:2946459-2948200 FORWARD LENGTH=282
          Length = 282

 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 59  LRVLPDFSQVYGFIGSVFDPDATEHVQRLKQMDRIDVETVLLLMRNLSINLTSPDFE 115
           L  +PDF++VY FIGSVFDP+   HV++LK+MD I+ ETVLLLMRNL++NL++PD E
Sbjct: 210 LHGVPDFAEVYNFIGSVFDPETRGHVEKLKEMDPINFETVLLLMRNLTVNLSNPDLE 266