Miyakogusa Predicted Gene

Lj0g3v0296239.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0296239.1 tr|Q20563|Q20563_CAEEL Protein TAF-11.1
OS=Caenorhabditis elegans GN=taf-11.1 PE=2
SV=1,40.16,3e-19,Histone-fold,Histone-fold; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,TAFII28-like protein; TAFII28,,CUFF.19850.1
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20280.1 | Symbols: TAF11 | TBP-associated factor 11 | chr4:1...   195   1e-50
AT1G20000.1 | Symbols: TAF11b | TBP-associated factor 11B | chr1...   178   2e-45

>AT4G20280.1 | Symbols: TAF11 | TBP-associated factor 11 |
           chr4:10953792-10954664 FORWARD LENGTH=210
          Length = 210

 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/125 (74%), Positives = 107/125 (85%)

Query: 58  MDVELTKLQPTGDPQKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQK 117
           MDVELTK   + DP KMAKMQ ILSQFTE+QMSRYESFRR+  Q+  MK+LL  +TG+QK
Sbjct: 86  MDVELTKYPTSSDPAKMAKMQTILSQFTEDQMSRYESFRRSALQRPQMKKLLIGVTGSQK 145

Query: 118 ITIPITIVVSGIAKMFVGEVVETARIVIKERKESGPIRPCHLREAYRRLKLEGKVFKRSV 177
           I +P+ IV  GIAKMFVGE+VETAR+V+ ERKESGPIRPCH+RE+YRRLKLEGKV KRSV
Sbjct: 146 IGMPMIIVACGIAKMFVGELVETARVVMAERKESGPIRPCHIRESYRRLKLEGKVPKRSV 205

Query: 178 PRLFR 182
           PRLFR
Sbjct: 206 PRLFR 210


>AT1G20000.1 | Symbols: TAF11b | TBP-associated factor 11B |
           chr1:6936898-6937666 REVERSE LENGTH=204
          Length = 204

 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/184 (54%), Positives = 123/184 (66%), Gaps = 13/184 (7%)

Query: 1   MKQSKDPFEAAFVESPPESPVQAQEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMD- 59
           MK SKDPFEAA +E   ESPV+ ++                               N D 
Sbjct: 32  MKHSKDPFEAA-MEEQEESPVETEQ----------TLEGDERAVKKCKTSVVAEAKNKDE 80

Query: 60  VELTKLQPTGDPQKMA-KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQKI 118
           VE TK     DP   A KMQ ILSQFTEEQMSRYESFRR+GF+K++M++L+  ITG  K+
Sbjct: 81  VEFTKNITGADPVTRANKMQKILSQFTEEQMSRYESFRRSGFKKSDMEKLVQRITGGPKM 140

Query: 119 TIPITIVVSGIAKMFVGEVVETARIVIKERKESGPIRPCHLREAYRRLKLEGKVFKRSVP 178
              + IVV GIAKMFVG++VETAR+V++ERKESGPIRPCH+RE+YRRLKL+GKV +RSV 
Sbjct: 141 DDTMNIVVRGIAKMFVGDLVETARVVMRERKESGPIRPCHIRESYRRLKLQGKVPQRSVQ 200

Query: 179 RLFR 182
           RLFR
Sbjct: 201 RLFR 204