Miyakogusa Predicted Gene

Lj0g3v0294549.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0294549.1 tr|G8XS16|G8XS16_9ASTR Homogentisate
phytylprenyltransferase OS=Artemisia sphaerocephala PE=2
SV=1,60.56,2e-18,BACTERIOCHLOROPHYLL SYNTHASE,NULL;
PRENYLTRANSFERASES,NULL,CUFF.19731.1
         (71 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11945.1 | Symbols: PDS2, ATHST, HST | homogentisate prenyltr...   105   6e-24
AT3G11945.2 | Symbols: PDS2, ATHST, HST | homogentisate prenyltr...   105   7e-24
AT2G18950.1 | Symbols: HPT1, TPT1, ATHPT, VTE2 | homogentisate p...    50   3e-07

>AT3G11945.1 | Symbols: PDS2, ATHST, HST | homogentisate
           prenyltransferase | chr3:3780041-3782880 REVERSE
           LENGTH=386
          Length = 386

 Score =  105 bits (262), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 60/71 (84%)

Query: 1   MNYIVSILAAIYMPQAFRRWLMIPAHMILASSLIYQVKILEQANHTKEAISGFYQFIWNL 60
           +NY+ +I  A YMPQ FR  LMIPAH+ILAS LI+Q  +LE+AN+TKEAISG+Y+FIWNL
Sbjct: 316 VNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWNL 375

Query: 61  FYAEYALFPFI 71
           FYAEY LFPF+
Sbjct: 376 FYAEYLLFPFL 386


>AT3G11945.2 | Symbols: PDS2, ATHST, HST | homogentisate
           prenyltransferase | chr3:3780041-3782880 REVERSE
           LENGTH=393
          Length = 393

 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 60/71 (84%)

Query: 1   MNYIVSILAAIYMPQAFRRWLMIPAHMILASSLIYQVKILEQANHTKEAISGFYQFIWNL 60
           +NY+ +I  A YMPQ FR  LMIPAH+ILAS LI+Q  +LE+AN+TKEAISG+Y+FIWNL
Sbjct: 323 VNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWNL 382

Query: 61  FYAEYALFPFI 71
           FYAEY LFPF+
Sbjct: 383 FYAEYLLFPFL 393


>AT2G18950.1 | Symbols: HPT1, TPT1, ATHPT, VTE2 | homogentisate
           phytyltransferase 1 | chr2:8207491-8210047 FORWARD
           LENGTH=393
          Length = 393

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 1   MNYIVSILAAIYMPQAFRRWLMIPAHMILASSLIYQVKILEQANHTKEAISGFYQFIWNL 60
           M Y V+IL     P  + + + +  H+ILA++L  + K ++ ++ T+  I+  Y FIW L
Sbjct: 324 MAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTE--ITSCYMFIWKL 381

Query: 61  FYAEYALFPFI 71
           FYAEY L PF+
Sbjct: 382 FYAEYLLLPFL 392